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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr15 | genome | chr15:897853..901757 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G03180.1 vs.
Match: CEL94255.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]; AND95659.1 Peroxisomal multifunctional enzyme type 2 [Vitrella brassicaformis]) HSP 1 Score: 427.9 bits (1099), Expect = 3.600e-116 Identity = 234/431 (54.29%), Postives = 300/431 (69.61%), Query Frame = 0
Query: 5 LRFDGQVAIVTGAGGGLGRAYALLLASRGAKVVVNDLG----GAVDGSGADARAADKVVAEIKAEGGEATPNYDSVESGANIVKTAMDTWGRLDIIVNNAGILRDRSFLKMTDQDWDLVYKVHLLGTYKVTKAAWPIMRAQKYGRIVNVCSASGLYGNEGQGNYAAMKMGIAGLSATLAKEGTRYNVKVNTIAPIAGSRMTASIMPPDLVEALKPDYVAPVVAFLAHASVPDSGGIFELGAGWVSRLRWQRSQGSFFQLASFSPEAVRDKFEEVNDFEGRPVSYPTSNNDAFGEIMSNLENQK-APTPSSLPPSAAATTKS-TLASAPLFETMEKALK--DDGAGLAKKINGSYRF--IVDDG-----IWVLDLKGATPSLREGDKETTVDVTLRVSDADFVQIVTGKLNSQQAFMKGKLKIKGNMGMAMK 421
LRFD QVA++TGAGGGLGRAYALL ASRGAKVVVNDLG G G G RAADKVVAEI+ GGEA NYDSVE G I++TA+D +GR+DI+VNNAGILRD SF KMT +DWDL+ VHL G Y TKAAWP M+ QKYGRIVN S +GLYGN GQ NY+A K+G+ G S TLA+EG R N+ N IAP+AG+RMT ++MP ++V+ALKP+YVAP+VA+L H S +SG +FE+GAGW+S+LRWQR+QG F +F+ + V + ++ DF G +YPTS ++ +M LE K + P++ PP+AA T + T S LF +E +K D+G L +K+N S+ F + G W +DLK S+ EG K + D ++DADFV +VTGKLN Q AFM+GK+K+KG+M AMK
Sbjct: 3 LRFDNQVAVITGAGGGLGRAYALLFASRGAKVVVNDLGVTTHGEAGGKGG-VRAADKVVAEIRRAGGEAVANYDSVEFGEKIIQTAIDAYGRVDILVNNAGILRDVSFAKMTAKDWDLIMLVHLKGAYSCTKAAWPYMQKQKYGRIVNAASGAGLYGNFGQANYSAAKLGLVGFSKTLAREGERRNINANAIAPLAGTRMTETVMPQEVVDALKPEYVAPLVAYLCHESCRESGEVFEVGAGWISKLRWQRTQGHMFSSPTFTADDVAANWAKITDFTG--ATYPTSLQESMELVMRRLEEFKTSGAPAAAPPAAAPPTGAPTTPSEKLFRVLEAWIKVGDNGQKLVQKVNASFHFDILTKKGGPIATSWTIDLKNPPGSISEG-KSGSCDALFSMADADFVSVVTGKLNPQIAFMQGKMKVKGSMKAAMK 429
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G03180.1 ID=NO15G03180.1|Name=NO15G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1940bp
TAGGAGAGTAGATGATGTAGTAAGAGTCATGAACAACCTCTCTGTCAAGT
GTCTTGCCTGAATGGTAGGCCTGCTGTTCAATTCTATTGTTGTGCATACT
GTCGGACATGATTTTATCAATCAGGGGACATCCGTGGCACAAGAAAGGGA
TGGCGTGGGAGTAATTGTTAGATGCTTCAACAGCAACTTGACGCTTCCAC
ATCTCATTGCCGTGCCTCCCCACCCTTATAAATTACACCCTCACCCAGAC
TTACAGACAGAAAGATGGCCGATGCTTTGCGCTTCGATGGTCAAGTTGCC
ATTGTCACCGGTGCCGGCGGAGGTTTGGGCCGAGCATATGCCTTATTGCT
GGCATCACGGGGAGCCAAGGTGGTGGTGAACGACCTGGGAGGAGCTGTAG
ACGGGTCCGGTGCAGATGCCCGTGCAGCGGATAAGGTGGTGGCTGAAATC
AAGGCAGAGGGAGGGGAGGCCACTCCCAATTATGACTCTGTGGAGAGTGG
CGCCAACATCGTCAAGACGGCCATGGATACGTGGGGCCGCCTGGACATCA
TCGTGAACAACGCCGGCATACTCCGCGACCGGTCATTCTTAAAGATGACG
GACCAAGACTGGGATCTTGTCTATAAAGTCCATCTCCTCGGCACCTACAA
AGTGACTAAAGCGGCCTGGCCCATCATGCGGGCGCAAAAGTACGGCAGGA
TCGTTAATGTCTGCTCCGCCTCGGGCCTTTACGGCAACGAAGGGCAAGGC
AATTACGCGGCCATGAAGATGGGCATCGCGGGCCTTAGCGCCACCCTTGC
CAAGGAGGGCACGCGTTACAATGTCAAGGTGAATACCATTGCGCCCATCG
CAGGCTCCCGGATGACTGCGAGTATCATGCCTCCCGATCTGGTGGAAGCA
CTCAAGCCCGATTACGTTGCACCCGTCGTGGCTTTCCTGGCCCATGCCTC
GGTGCCCGACAGCGGAGGCATTTTCGAGCTGGGGGCCGGGTGGGTTTCGC
GCCTGCGGTGGCAGCGGAGCCAGGGATCCTTCTTCCAGCTCGCCTCCTTT
TCCCCTGAGGCGGTGCGGGACAAGTTCGAAGAAGTCAATGATTTCGAGGG
CCGGCCGGTATCATACCCCACGAGCAACAACGACGCCTTCGGAGAGATCA
TGTCCAACCTGGAGAATCAGAAAGCCCCTACCCCTTCCTCCCTCCCTCCT
TCGGCTGCTGCCACGACCAAGAGCACTCTGGCCAGTGCCCCACTCTTTGA
GACCATGGAGAAGGCCCTCAAAGACGATGGCGCAGGCTTAGCCAAGAAGA
TCAATGGAAGTTACCGTTTCATTGTCGACGATGGTATCTGGGTTCTCGAC
CTCAAGGGTGCCACCCCCTCCCTCCGGGAAGGCGACAAGGAGACGACTGT
GGACGTGACTCTCCGAGTCAGTGACGCCGACTTCGTTCAAATCGTAACGG
GCAAGCTTAACAGCCAGCAGGCCTTCATGAAAGGGAAGTTGAAGATCAAG
GGCAACATGGGCATGGCCATGAAGCTGGAGAGCATCCTCAAGCTGGCCCG
CAACAAGGCTAAACTCTAGTAAACTCTAGAGAGCAGGAGAGGCAGAGTGG
GTGGTCGGGTGTCGGGCGCGTTTGTGCGGGTAATCAACAACCAGGGAGAA
TACTTTTGTGCAAGCGCTGAATGAATTTTATCGAATGATGCTTAGATTCA
TGCTGTTTGAGGGTAAACATGAGGTGGTGTGATGGGGAGTTGGGAAGGAG
ATGTCGAGAGATCGAGGATACGATATTGTGTGCAGGGAAAAAGAAGACAT
GCAAACCGCAACGGCACACGCACATAGCGGAAAGTATTGACACGATTGAG
ACAACGAGGAAACAGAAAAATAATAGTGAGAAGACACGAATATATGCAGA
GAGCGGCAAACAAAGAAAAAATGGCGCGCAGTCGCCACAT back to topprotein sequence of NO15G03180.1 >NO15G03180.1-protein ID=NO15G03180.1-protein|Name=NO15G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MADALRFDGQVAIVTGAGGGLGRAYALLLASRGAKVVVNDLGGAVDGSGA
DARAADKVVAEIKAEGGEATPNYDSVESGANIVKTAMDTWGRLDIIVNNA
GILRDRSFLKMTDQDWDLVYKVHLLGTYKVTKAAWPIMRAQKYGRIVNVC
SASGLYGNEGQGNYAAMKMGIAGLSATLAKEGTRYNVKVNTIAPIAGSRM
TASIMPPDLVEALKPDYVAPVVAFLAHASVPDSGGIFELGAGWVSRLRWQ
RSQGSFFQLASFSPEAVRDKFEEVNDFEGRPVSYPTSNNDAFGEIMSNLE
NQKAPTPSSLPPSAAATTKSTLASAPLFETMEKALKDDGAGLAKKINGSY
RFIVDDGIWVLDLKGATPSLREGDKETTVDVTLRVSDADFVQIVTGKLNS
QQAFMKGKLKIKGNMGMAMKLESILKLARNKAKL* back to topmRNA from alignment at chr15:897853..901757- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G03180.1 ID=NO15G03180.1|Name=NO15G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=3905bp|location=Sequence derived from alignment at chr15:897853..901757- (Nannochloropsis oceanica)
TAGGAGAGTAGATGATGTAGTAAGAGTCATGAACAACCTCTCTGTCAAGT
GTCTTGCCTGAATGGTAGGCCTGCTGTTCAATTCTATTGTTGTGCATACT
GTCGGACATGATTTTATCAATCAGGGGACATCCGTGGCACAAGAAAGGGA
TGGCGTGGGAGTAATTGTTAGATGCTTCAACAGCAACTTGACGCTTCCAC
ATCTCATTGCCGTGCCTCCCCACCCTTATAAATTACACCCTCACCCAGAC
TTACAGACAGAAAGATGGCCGATGCTTTGCGCTTCGATGGTCAAGTTGCC
ATTGTCACCGGTACGTGCTCTCTTTACCCGTTGTCCGTCTTTCTATCTTC
CCCCACCCGTGTGGAAGAGCCTTTTTTTTAAATATTCACCACCTGAAGCA
CTCATTGTCCCTATCCCTCTACATAAAGGTGCCGGCGGAGGTTTGGGCCG
AGCATATGCCTTATTGCTGGCATCACGGGGAGCCAAGGTGGTGGTGAACG
ACCTGGGTAAGAGGAGATGGGGAAGGAGTGGATAGGACGGGGGTCTCCAA
TAAACACAACCTTCTTCCTCTAACCAATTTACACCCATCAATCTCAAATT
TTTAGGAGGAGCTGTAGACGGGTCCGGTGCAGATGCCCGTGCAGCGGATA
AGGTGGTGGCTGAAATCAAGGCAGAGGGAGGGGAGGCCACTCCCAATTAT
GACTCTGTGGAGAGTGGCGCCAACATCGTCAAGACGGCCATGGTAAGAAA
GAAAAGGAGAGCGGGAAGGAGAAGGAAAAAGAGGATCTCGACGAATATTC
AAATAATTGTGCCCGTCAGAAGTATTCATCTGGTATCATCCCGATCCTTG
ACCTTTTTTCCCTCCCCTTCTCTCCCCCCCGGCCTCCTCCTTTCTCTGCA
GGATACGTGGGGCCGCCTGGACATCATCGTGAACAACGCCGGCATACTCC
GCGACCGGTCATTCTTAAAGATGACGGACCAAGACTGGGATCTTGTCTAT
AAAGTCCATCTCCTCGGTACGACCCCGCTCCCCTCCCTCCCTCCCTCCTT
CTTGACGCTCAACCCTTCCCCCATCCATCCCCGCCCCCTCCCTCCTGTCT
CAGGCACCTACAAAGTGACTAAAGCGGCCTGGCCCATCATGCGGGCGCAA
AAGTACGGCAGGATCGTTAATGTCTGCTCCGCCTCGGGCCTTTACGGCAA
CGAAGGGGTAAGTCCATCCGCGTCCCTGTCGATTTATGAGACGAACCCCC
CCCCTCCCTCCCTCCCCCCTCTCCTCCCTCCCTCCTTTTGTCCATGTTGT
TGTCGAGAGTCATATCGAAAGCATGGTCAGAGGGTAGTGCGAGGCATTTT
CAAGGTCGTCCTTCTTTTTCTGATACTCCCTCCCTCCCTCCCTTCCTCCC
TCCTTCCCTCCTTCACCAGCAAGGCAATTACGCGGCCATGAAGATGGGCA
TCGCGGGCCTTAGCGCCACCCTTGCCAAGGAGGGCACGCGTTACAATGTC
AAGGTGCGCTTAGAGATGCCTGCCCGACCCTCCCTCCTCCCATCTCCATG
TCGGCGATTCACCCCGGCCCTCCTTCCCTTCCTCGCCCTCCCCCCCTACC
TCGTTTCTGCAGGTGAATACCATTGCGCCCATCGCAGGCTCCCGGATGAC
TGCGAGTATCATGCCTCCCGATCTGGTGGAAGCACTCAAGCCCGATTACG
TTGCACCCGTCGTGGCTTTCCTGGCCCATGCCTCGGTGCCCGACAGGTAA
GCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTTCGTCTTTCGTCGACCCT
CTTCCACACACTAGCCTTGCTTTTCTTTCTTTCCATGCCCTCTGACTGTC
CCTCCCTCTCTTCCCTCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGCGGAGGCATTTTCGAGCTG
GGGGCCGGGTGGGTTTCGCGCCTGCGGTGGCAGCGGAGCCAGGGATCCTT
CTTCCAGCTCGCCTCCTTTTCCCCTGAGGCGGTGCGGGACAAGTTCGAAG
AAGTCAATGATTTCGAGGGCCGGCCGGTAAAGGAGAGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGATGGAAGGAGGGAGGGAAAGGAGGATTATTTCTTG
CCTCGGAGCACTATCTTAACCACCTCTCCTAGTGGCTCACAACCTCCCTC
CCTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCAGGTATCATA
CCCCACGAGCAACAACGACGCCTTCGGAGAGATCATGTCCAACCTGGAGA
ATCAGAAAGCCCCTACCCCTTCCTCCCTCCCTCCTTCGGCTGCTGCCACG
ACCAAGAGCACTCTGGCCAGTGCCCCACTCTTTGAGACCATGGAGAAGGT
ACCTCTTTCCCTCCCTCCCTCTCTCCTTCCCTCCCTCCCTCCATTATTCC
CTTCCTCCCTCCCCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCTCTC
CCTCCCTCCCTCCCTCCCTGAGGTCGAATCTACCTTGCCTTCCTCTACTG
ACTTTCAACCCCTCTCTACTCTACATGATCACCCCTCCCTTTCTCCCTCC
CTCCCTCCCTTCCCCCCTCCTTCGACAGGCCCTCAAAGACGATGGCGCAG
GCTTAGCCAAGAAGATCAATGGAAGTTACCGTTTCATTGTCGACGATGGT
ATCTGGGTTCTCGACCTCAAGGTACTTTCCTCCCTCCCTCCTTCCCTCCC
TCCCTCCCTCCCTCCCATGTGGTTTCTCGCAGTCCTGGGGCGAGACATTT
AGCCGCCTTAGTCCCATGCCATCAGATGCAATCATGAAAGGAGTTTGGGG
AAATAAACCAAATCTTGCCTTCCACGGCAAAGTCTCTCTTCCAGCTTCTC
ACAATCCTTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCT
CCCTCTTTCCCTCCCTTCCCTTCTGGATCCTCAGGGTGCCACCCCCTCCC
TCCGGGAAGGCGACAAGGAGACGACTGTGGACGTGACTCTCCGAGTCAGT
GACGCCGACTTCGTTCAAATCGTAACGGGCAAGCTTAACAGCCAGCAGGT
ACGTTTCATGCCCCTGGTGAATCAATGCTTTCTCCCCCTTCCCCCCAATT
CTTCCCCCCCCCCCTCGTCTGGATGTGACGCTTCGTGGTGCTGATTTTGT
TCAGACTGTCACGACTTCACGTAACAGCCAGCGAATATATATATATAAAT
TTATAAATGATATGGTAATAATATGATCTCACGTAACAGCCAGCGAATAT
CATCGCCAACCTTTCCTCCTTATGATGCCCATGTATTCTAAATCATGCGG
CAGGCGACAATCTCTAGAATGGGGAATGACCTGTCCACACTGCGCCTCCC
ACCTACTCAATTTTTCCTCTGCCCCATCCACACAGGCCTTCATGAAAGGG
AAGTTGAAGATCAAGGGCAACATGGGCATGGCCATGAAGCTGGAGAGCAT
CCTCAAGCTGGCCCGCAACAAGGCTAAACTCTAGTAAACTCTAGAGAGCA
GGAGAGGCAGAGTGGGTGGTCGGGTGTCGGGCGCGTTTGTGCGGGTAATC
AACAACCAGGGAGAATACTTTTGTGCAAGCGCTGAATGAATTTTATCGAA
TGATGCTTAGATTCATGCTGTTTGAGGGTAAACATGAGGTGGTGTGATGG
GGAGTTGGGAAGGAGATGTCGAGAGATCGAGGATACGATATTGTGTGCAG
GGAAAAAGAAGACATGCAAACCGCAACGGCACACGCACATAGCGGAAAGT
ATTGACACGATTGAGACAACGAGGAAACAGAAAAATAATAGTGAGAAGAC
ACGAATATATGCAGAGAGCGGCAAACAAAGAAAAAATGGCGCGCAGTCGC
CACAT back to topCoding sequence (CDS) from alignment at chr15:897853..901757- >NO15G03180.1 ID=NO15G03180.1|Name=NO15G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr15:897853..901757- (Nannochloropsis oceanica)
ATGGCCGATGCTTTGCGCTTCGATGGTCAAGTTGCCATTGTCACCGGTGC
CGGCGGAGGTTTGGGCCGAGCATATGCCTTATTGCTGGCATCACGGGGAG
CCAAGGTGGTGGTGAACGACCTGGGAGGAGCTGTAGACGGGTCCGGTGCA
GATGCCCGTGCAGCGGATAAGGTGGTGGCTGAAATCAAGGCAGAGGGAGG
GGAGGCCACTCCCAATTATGACTCTGTGGAGAGTGGCGCCAACATCGTCA
AGACGGCCATGGATACGTGGGGCCGCCTGGACATCATCGTGAACAACGCC
GGCATACTCCGCGACCGGTCATTCTTAAAGATGACGGACCAAGACTGGGA
TCTTGTCTATAAAGTCCATCTCCTCGGCACCTACAAAGTGACTAAAGCGG
CCTGGCCCATCATGCGGGCGCAAAAGTACGGCAGGATCGTTAATGTCTGC
TCCGCCTCGGGCCTTTACGGCAACGAAGGGCAAGGCAATTACGCGGCCAT
GAAGATGGGCATCGCGGGCCTTAGCGCCACCCTTGCCAAGGAGGGCACGC
GTTACAATGTCAAGGTGAATACCATTGCGCCCATCGCAGGCTCCCGGATG
ACTGCGAGTATCATGCCTCCCGATCTGGTGGAAGCACTCAAGCCCGATTA
CGTTGCACCCGTCGTGGCTTTCCTGGCCCATGCCTCGGTGCCCGACAGCG
GAGGCATTTTCGAGCTGGGGGCCGGGTGGGTTTCGCGCCTGCGGTGGCAG
CGGAGCCAGGGATCCTTCTTCCAGCTCGCCTCCTTTTCCCCTGAGGCGGT
GCGGGACAAGTTCGAAGAAGTCAATGATTTCGAGGGCCGGCCGGTATCAT
ACCCCACGAGCAACAACGACGCCTTCGGAGAGATCATGTCCAACCTGGAG
AATCAGAAAGCCCCTACCCCTTCCTCCCTCCCTCCTTCGGCTGCTGCCAC
GACCAAGAGCACTCTGGCCAGTGCCCCACTCTTTGAGACCATGGAGAAGG
CCCTCAAAGACGATGGCGCAGGCTTAGCCAAGAAGATCAATGGAAGTTAC
CGTTTCATTGTCGACGATGGTATCTGGGTTCTCGACCTCAAGGGTGCCAC
CCCCTCCCTCCGGGAAGGCGACAAGGAGACGACTGTGGACGTGACTCTCC
GAGTCAGTGACGCCGACTTCGTTCAAATCGTAACGGGCAAGCTTAACAGC
CAGCAGGCCTTCATGAAAGGGAAGTTGAAGATCAAGGGCAACATGGGCAT
GGCCATGAAGCTGGAGAGCATCCTCAAGCTGGCCCGCAACAAGGCTAAAC
TCTAG back to top
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