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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr15 | genome | chr15:845408..849391 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G03080.1 vs.
Match: OQS00988.1 (rab GDP dissociation inhibitor alpha [Achlya hypogyna]) HSP 1 Score: 645.2 bits (1663), Expect = 1.700e-181 Identity = 316/460 (68.70%), Postives = 375/460 (81.52%), Query Frame = 0
Query: 40 EAGPDMSWLPPGKKPLADGLYDAIVMGTGLKECIISGLLSVMGLKVLHIDRNAYYGGDCASLNLTNLYAKFRPEGSREPSAALGSNRDYNVDLVPKFIMACGNLVKILLHTKVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFLSYLAKYDEKDPNTFGGYDLTRMTMRGLYDKYGLDEGTRTFTGHAMALHLDDTYLDRPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAINGGTFMLDHSVDEILYTPEGMAEGIRHGDEVAKAKYLIGDPSYFPKDRVKVTGRVVRSIILMDHPVANTSNSESTQIIIPASELKRHHDVYLAVVSSAHMVAAQGKFIAIASTTVETANPLQELEPAVRLLGNYIERFDSVEETFAPLEDGSKDNCYISSSYDATSHFETTAEDVLSLYQRITGKELDLTISADTTDAD 500
EA D WLP G + LADG YDAIV+GTGLKECIISGLL+ G KVLH+DRN YYGGDCASLNLTNLYAKFR EP A LGSNRDYN+DL+PKFIMACG LVK+LLHTKVTRYL+FKNVDGSYV++ GKIYKVPAT +EAL +SL+G+FEKRRFR+ L Y+ Y+E+DP+TF G DL M LY K+G+D T++FTGH MAL DD YL+RPA+E V+AI++Y YSLERYGKSPY+YPIYGLGGLPEGFSRLCAI+GGTFML SVDEIL +G A GIR G+EVAK K +IGDPSYFP + +VTG+VVRSI ++ HP+ NT+NSES QIIIPA++ R D+Y+ VVS AH VAA+ +IAI STTVETANPL EL+ V LLG Y++RFD+V + P+ DG DNC+ISSSYDATSHFETT++DVLSLYQRITG+ LD+ I+AD+TDAD
Sbjct: 4 EAKLDFEWLPAGTEALADGEYDAIVLGTGLKECIISGLLATKGQKVLHLDRNDYYGGDCASLNLTNLYAKFR--NGAEPIAGLGSNRDYNIDLIPKFIMACGKLVKMLLHTKVTRYLDFKNVDGSYVYKGGKIYKVPATGEEALKSSLMGIFEKRRFRSMLMYIYNYEEEDPSTFDGMDLKVQPMSDLYAKFGVDANTQSFTGHTMALMRDDEYLNRPAIEAVRAIKMYAYSLERYGKSPYLYPIYGLGGLPEGFSRLCAIHGGTFMLHRSVDEIL-EKDGKAWGIRCGNEVAKGKIIIGDPSYFPASKTRVTGKVVRSIFILRHPINNTANSESCQIIIPAAQANRRSDIYVCVVSFAHCVAAKDTYIAIVSTTVETANPLAELDIGVSLLGEYVDRFDAVSDQLEPIGDGLNDNCFISSSYDATSHFETTSDDVLSLYQRITGEALDMNINADSTDAD 460
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G03080.1 ID=NO15G03080.1|Name=NO15G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
AAACACAGCACCCACACACGTCCAAGGCACCATGGCCGACACCACCGGCC
ACCCGCTTGATGGCGCCCACACGGAAATTGCTCCTCCCCCTCCTGCTTCG
CCTGCGGTCAAGGAGGAGGAAGAGGGGCCCGCCGCGGCCCCTGCCGAGGA
AGCTGGCCCGGACATGAGCTGGTTGCCCCCTGGGAAGAAGCCTTTGGCTG
ATGGCTTGTACGACGCGATTGTTATGGGGACAGGCTTGAAGGAATGCATC
ATCTCGGGCCTCCTCTCGGTGATGGGCCTTAAAGTCCTCCACATCGACCG
TAATGCCTACTACGGGGGAGATTGCGCTTCCCTTAACCTTACGAACCTCT
ATGCGAAGTTCCGTCCAGAGGGTTCGCGAGAGCCTTCCGCTGCCTTAGGG
AGCAACCGCGACTACAACGTGGATCTGGTGCCCAAGTTCATCATGGCTTG
TGGCAATCTCGTCAAGATCCTCCTTCACACCAAGGTGACACGGTACCTGG
AGTTTAAGAACGTGGATGGCAGCTACGTCTTCCGCCAGGGCAAGATCTAC
AAGGTCCCGGCCACCCTTGACGAGGCCCTGATGACGTCTCTGATTGGTCT
ATTTGAGAAACGACGTTTCCGAAACTTTTTGTCTTACCTCGCCAAGTATG
ATGAAAAGGACCCCAACACCTTCGGAGGCTACGACTTGACCCGGATGACG
ATGCGGGGGTTATACGACAAGTACGGCCTGGACGAGGGCACTCGTACCTT
CACTGGGCACGCTATGGCGCTGCACCTGGACGACACCTACCTCGACCGGC
CGGCCCTGGAGACGGTGAAAGCCATCCAGCTGTATGTCTACTCCCTGGAG
CGGTACGGGAAGAGCCCCTATATCTACCCCATCTACGGCTTGGGAGGTCT
CCCCGAGGGTTTTTCACGCCTGTGCGCCATTAATGGAGGGACCTTTATGC
TGGACCACAGCGTGGACGAAATCCTCTACACGCCCGAGGGCATGGCAGAA
GGCATCCGTCACGGTGACGAGGTGGCCAAGGCGAAGTACCTCATTGGGGA
TCCTTCCTACTTCCCAAAGGATAGGGTCAAGGTCACAGGACGAGTCGTTC
GCTCCATCATCCTCATGGACCATCCTGTCGCGAATACCAGCAACTCGGAA
TCGACCCAGATCATCATCCCCGCCTCGGAGCTCAAGCGTCACCATGACGT
TTACCTCGCGGTCGTCTCCTCCGCCCACATGGTGGCAGCGCAAGGCAAAT
TTATCGCGATTGCCTCTACGACCGTGGAGACCGCCAATCCACTGCAGGAG
CTAGAGCCGGCCGTCCGTCTGCTGGGTAACTACATCGAGCGATTTGACTC
GGTGGAAGAAACGTTTGCTCCTTTGGAGGACGGGAGCAAGGATAATTGCT
ACATCTCCTCTTCCTATGATGCCACCTCCCACTTCGAGACGACGGCGGAA
GATGTTTTGTCTCTCTATCAACGCATCACGGGGAAGGAATTGGATTTGAC
GATTTCCGCGGACACTACCGACGCGGATTATTGAGGGGAAGGAAGAGGAA
GGGGAAGAGGAGGAAGAGGAGCAGGAGGAGCAGGAGGAGGAGGAGAGGGA
GGGGGAGAAGGAGGAGGACGGGAGGAGGAGGAGCAGGAGCAGGAGCACAT
GTGGGGGGGGAGGAGGAGGGCGTCTTGTAACGGGTGGGGGGCGGACACCA
GAGAGCAGAAGAAGAACAGGCGCGACGAATCTGGTGATGGGTTTTGAATA
GAGACGGGAAGGTAGTAGCAGATGGAGTGAAAGTCAGAAAAGGGGGCGTA
AGAACAAAGAAAAAACATGACAGTCGACGAGACAATGGAGTGAGGAGGTC
GGCCTAGGGGTGAGACCGAGCAGCAGCC back to topprotein sequence of NO15G03080.1 >NO15G03080.1-protein ID=NO15G03080.1-protein|Name=NO15G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MADTTGHPLDGAHTEIAPPPPASPAVKEEEEGPAAAPAEEAGPDMSWLPP
GKKPLADGLYDAIVMGTGLKECIISGLLSVMGLKVLHIDRNAYYGGDCAS
LNLTNLYAKFRPEGSREPSAALGSNRDYNVDLVPKFIMACGNLVKILLHT
KVTRYLEFKNVDGSYVFRQGKIYKVPATLDEALMTSLIGLFEKRRFRNFL
SYLAKYDEKDPNTFGGYDLTRMTMRGLYDKYGLDEGTRTFTGHAMALHLD
DTYLDRPALETVKAIQLYVYSLERYGKSPYIYPIYGLGGLPEGFSRLCAI
NGGTFMLDHSVDEILYTPEGMAEGIRHGDEVAKAKYLIGDPSYFPKDRVK
VTGRVVRSIILMDHPVANTSNSESTQIIIPASELKRHHDVYLAVVSSAHM
VAAQGKFIAIASTTVETANPLQELEPAVRLLGNYIERFDSVEETFAPLED
GSKDNCYISSSYDATSHFETTAEDVLSLYQRITGKELDLTISADTTDADY
* back to topmRNA from alignment at chr15:845408..849391+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G03080.1 ID=NO15G03080.1|Name=NO15G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=3984bp|location=Sequence derived from alignment at chr15:845408..849391+ (Nannochloropsis oceanica)
AAACACAGCACCCACACACGTCCAAGGCACCATGGCCGACACCACCGGCC
ACCCGCTTGATGGCGCCCACACGGAAATTGCTCCTCCCCCTCCTGCTTCG
CCTGCGGTCAAGGAGGAGGAAGAGGGGCCCGCCGCGGCCCCTGCCGAGGA
AGCTGGCCCGGACATGAGCTGGTTGCCCCCTGGGAAGAAGCCTTTGGCTG
ATGGCTTGTACGACGCGATTGTTATGGGGACAGGCTTGAAGGTATGCAGG
TTGGGGGTGGTTGTAGGAGAGGGTGTGCAAGGAAGGAGGGCGGGAGGAAG
CCGAGAGGCTGGACCGTGAGGGTAAGACTGATGAGGGAGGACCTTGCCGA
TAGAGAAGCCAGGACAGACTCCGATTGATGACAAAGATGAGAATAGATGA
AGAGCAAGGGTGTGCCAGAGAGTCCGCCCCCCCCCGTCTTTTCTCTCCTC
TCGCTTCACTCCTCCCCCATCTTCTCTCCACAGGAATGCATCATCTCGGG
CCTCCTCTCGGTGATGGGCCTTAAAGTCCTCCACATCGACCGTAATGCCT
ACTACGGGGGAGATTGCGCTTCCCTTAACCTTACGAACCTCTATGCGAAG
TTCCGTCCAGAGGGTTCGCGAGAGCCTTCCGCTGCCTTAGGGAGCAACCG
CGACTACAACGTGGATCTGGTGCCCAAGTTCATCATGGCTTGTGGCAATC
TCGTCAAGATCCTCCTTCACACCAAGGTGAGAAAGGGAGGGAGGCAGGGA
GGGAAGAAGAAGGGAATGGCGGAGAAAAAGGACGAGTATCTCCGTACCCT
TTTCTACGCACCCACCCCCACCCGTGATTTGTCTGCTCACACACCTACAC
GTACTCATACTCACCCATGAGACGACATACTCCGACTTCATGCGCAGGTG
ACACGGTACCTGGAGTTTAAGAACGTGGATGGCAGCTACGTCTTCCGCCA
GGGCAAGATCTACAAGGTAGGCTTCCCTATCTCCTTCCCTCCCTCCCTCC
CTCCCTCCCTTAACTCCTTCAATTTCTCTATTTCGACCTTCTGCCCTCCT
TCTCACACCCACCCCTCCTTCCCTCCCTCCCTACTTTTCGCCCAGGTCCC
GGCCACCCTTGACGAGGCCCTGATGACGTCTCTGATTGGTCTATTTGAGA
AACGACGTTTCCGAAACTTTTTGTCTTACCTCGCCAAGTATGATGAAAAG
GACCCCAACACCTTCGGAGGTAGGAAGGGAGGGAGGGAGGGAGGGAAGAG
GGGGGATGATGAAAAGGACCCCAACACCTTCCGAGGTAGGAAAGGAGGGA
GGGAGGGAAGAGGGGGGATGATGAAAAGGACCCCAACACCTTCGGAGGTA
GGAAGGGAGGGAGGGAGGGAAGAGGGGGGATGATGAAAAGGACCCCAACA
CCTTCGGAGGTAGGGAGGGAGGGAGGGAGGGAAGAGGGGGGATTTCCGGT
GGCATTTCCTCTTGCACGTTCTAGATTTTCCTCAACTCAACACTCAGGGG
CTTATGCCACACCTCTCCTACACCTTCTCGTGCCCCCCCTCCTTCCCTCC
CTCCCTCCCTCCTTCTCTCCCTCCCTCCCCACCCAGGCTACGACTTGACC
CGGATGACGATGCGGGGGTTATACGACAAGTACGGCCTGGACGAGGGCAC
TCGTACCTTCACTGGTAAATAAAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGATGGATGGGGAGCATGAGAGATTTGGGGCTTGAAGGGTCTTTCCGT
GGTGTTGATTTTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGTCCA
GGGCACGCTATGGCGCTGCACCTGGACGACACCTACCTCGACCGGCCGGC
CCTGGAGACGGTGAAAGCCATCCAGCTGTATGTCTACTCCCTGGAGCGGT
ACGGGAAGAGCCCCTATATCTACCCCATCTACGGCTTGGGAGGTAGGGAG
GGAGGGAGGGAGGGCGGGAGGGAGGGACGGAGAGTGGGAGAAACGAAGGA
CGTGATTAAATCTGTCTCGATAGCTACACGCAAATAACGAAAGACACCCT
AAGTCCCTCCCTCCCTCCTTCCCTTTTCTCCCTCCCTCCTTTTCTTCCTC
CCTCTCTAGGTCTCCCCGAGGGTTTTTCACGCCTGTGCGCCATTAATGGA
GGGACCTTTATGCTGGACCACAGCGTGGACGAAATCCTCTACACGCCCGA
GGTAGGGAGGGAGGGAGGGAGGGAAGGGAGCGAAGCAGGAAAGGAGGGAA
GGGCAAATCTGCCATCCTATCCACCCGTATATATTTCAGGGTACAGAGTT
CAATCCGCCCGTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTAACTAGGGCATGGCAGAAGGCATCCGTCACGGTGACGAGGT
GGCCAAGGCGAAGTACCTCATTGGGGATCCTTCCTACTTCCCAAAGGATA
GGGTCAAGGTCACAGGACGGTAAGGGGGAAAGGAGGGAGGGAGGGAAAGA
GGAAGAAGGTGGGATCCACTCTTCTTATGGCGTCTTTACACACACACACA
CATATATATATATTACATATATGTATATCCAGAGTCGTTCGCTCCATCAT
CCTCATGGACCATCCTGTCGCGAATACCAGGTAGATAAGGAGAGGGGGGT
GACAAATTTAAGTTATCAAAAATGCGCGAAAAGGGGAGGAATGAAGGGAG
GGAGGGAAGAAAGGATGAATGGGAAGGGGAAATTTACGGGCATTGCTCCC
TCCGCATTTCTTCTCACGCATCCTCCCTCCCCTCCTCCCCTCCCCCCCTC
CCTTCCTCCCTCCTCCCATCCCTCCAGCAACTCGGAATCGACCCAGATCA
TCATCCCCGCCTCGGAGCTCAAGCGTCACCATGACGTTTACCTCGCGGTC
GTCTCCTCCGCCCACATGGTGGCAGCGCAAGGTAAGGCTGTGATTAAATA
GGGTGAGGGCTAGCGAGTGATCGAATCGGATTACGTGTGATCAAATGGGC
CAAGGAGGGATTGAGAGACGGGAGGCTGCATACTGGATACATATGAAGGG
ATAAAGTGTGGGAAGAACGCGACGTGTCCCGATCTGCACTTGTTTCTTAT
TTTTCATTCACTCACTACCTGCATCCGTCTATCCCCTACCCCATTCACTG
TACGCAGGCAAATTTATCGCGATTGCCTCTACGACCGTGGAGACCGCCAA
TCCACTGCAGGAGCTAGAGCCGGCCGTCCGTCTGCTGGGTAACTACATCG
AGCGATTTGACTCGGTGCGTGGAGAAGAAAGGAGGGGAAAAGGATGGGAG
GGAGAAAAATCGAGGGAACCATTTGGGAGAAAGAGAGGGGGGAGGGAGGG
AGGGAGGAAGGGAGGGAGGGACATGAGGACTACGACACGCGCGACCCCTA
ACTCATTTCTCTCTCATTCGTATCCTCTCTCCCTCGTTTCGTCTCTTTTC
TTGCTAGGTGGAAGAAACGTTTGCTCCTTTGGAGGACGGGAGCAAGGATA
ATTGCTACATCTCCTCTTCCTATGATGCCACCTCCCACTTCGAGACGACG
GCGGAAGATGTTTTGTCTCTCTATCAACGCATCACGGGGAAGGAATTGGA
TTTGACGATTTCCGCGGACACTACCGACGCGGATTATTGAGGGGAAGGAA
GAGGAAGGGGAAGAGGAGGAAGAGGAGCAGGAGGAGCAGGAGGAGGAGGA
GAGGGAGGGGGAGAAGGAGGAGGACGGGAGGAGGAGGAGCAGGAGCAGGA
GCACATGTGGGGGGGGAGGAGGAGGGCGTCTTGTAACGGGTGGGGGGCGG
ACACCAGAGAGCAGAAGAAGAACAGGCGCGACGAATCTGGTGATGGGTTT
TGAATAGAGACGGGAAGGTAGTAGCAGATGGAGTGAAAGTCAGAAAAGGG
GGCGTAAGAACAAAGAAAAAACATGACAGTCGACGAGACAATGGAGTGAG
GAGGTCGGCCTAGGGGTGAGACCGAGCAGCAGCC back to topCoding sequence (CDS) from alignment at chr15:845408..849391+ >NO15G03080.1 ID=NO15G03080.1|Name=NO15G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr15:845408..849391+ (Nannochloropsis oceanica)
ATGGCCGACACCACCGGCCACCCGCTTGATGGCGCCCACACGGAAATTGC
TCCTCCCCCTCCTGCTTCGCCTGCGGTCAAGGAGGAGGAAGAGGGGCCCG
CCGCGGCCCCTGCCGAGGAAGCTGGCCCGGACATGAGCTGGTTGCCCCCT
GGGAAGAAGCCTTTGGCTGATGGCTTGTACGACGCGATTGTTATGGGGAC
AGGCTTGAAGGAATGCATCATCTCGGGCCTCCTCTCGGTGATGGGCCTTA
AAGTCCTCCACATCGACCGTAATGCCTACTACGGGGGAGATTGCGCTTCC
CTTAACCTTACGAACCTCTATGCGAAGTTCCGTCCAGAGGGTTCGCGAGA
GCCTTCCGCTGCCTTAGGGAGCAACCGCGACTACAACGTGGATCTGGTGC
CCAAGTTCATCATGGCTTGTGGCAATCTCGTCAAGATCCTCCTTCACACC
AAGGTGACACGGTACCTGGAGTTTAAGAACGTGGATGGCAGCTACGTCTT
CCGCCAGGGCAAGATCTACAAGGTCCCGGCCACCCTTGACGAGGCCCTGA
TGACGTCTCTGATTGGTCTATTTGAGAAACGACGTTTCCGAAACTTTTTG
TCTTACCTCGCCAAGTATGATGAAAAGGACCCCAACACCTTCGGAGGCTA
CGACTTGACCCGGATGACGATGCGGGGGTTATACGACAAGTACGGCCTGG
ACGAGGGCACTCGTACCTTCACTGGGCACGCTATGGCGCTGCACCTGGAC
GACACCTACCTCGACCGGCCGGCCCTGGAGACGGTGAAAGCCATCCAGCT
GTATGTCTACTCCCTGGAGCGGTACGGGAAGAGCCCCTATATCTACCCCA
TCTACGGCTTGGGAGGTCTCCCCGAGGGTTTTTCACGCCTGTGCGCCATT
AATGGAGGGACCTTTATGCTGGACCACAGCGTGGACGAAATCCTCTACAC
GCCCGAGGGCATGGCAGAAGGCATCCGTCACGGTGACGAGGTGGCCAAGG
CGAAGTACCTCATTGGGGATCCTTCCTACTTCCCAAAGGATAGGGTCAAG
GTCACAGGACGAGTCGTTCGCTCCATCATCCTCATGGACCATCCTGTCGC
GAATACCAGCAACTCGGAATCGACCCAGATCATCATCCCCGCCTCGGAGC
TCAAGCGTCACCATGACGTTTACCTCGCGGTCGTCTCCTCCGCCCACATG
GTGGCAGCGCAAGGCAAATTTATCGCGATTGCCTCTACGACCGTGGAGAC
CGCCAATCCACTGCAGGAGCTAGAGCCGGCCGTCCGTCTGCTGGGTAACT
ACATCGAGCGATTTGACTCGGTGGAAGAAACGTTTGCTCCTTTGGAGGAC
GGGAGCAAGGATAATTGCTACATCTCCTCTTCCTATGATGCCACCTCCCA
CTTCGAGACGACGGCGGAAGATGTTTTGTCTCTCTATCAACGCATCACGG
GGAAGGAATTGGATTTGACGATTTCCGCGGACACTACCGACGCGGATTAT
TGA back to top
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