NO15G02860.1, NO15G02860.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G02860.1
Unique Name	NO15G02860.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2063
Alignment location	chr15:779633..781695 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:779633..781695 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO15G02860.1 vs.
Match: EWM22385.1 (c-myb like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 320.5 bits (820), Expect = 1.100e-83
Identity = 166/266 (62.41%), Postives = 199/266 (74.81%), Query Frame = 0

Query:  255 SPAYHTSNGKRKLPTPWTPEEDARLREGIRIVGPRQWQRIAQEFLQGTRSETQCYQRWERTLKPGVKTGPWTADEDAILLACVQAGMTRWSEISKRIPGRLSKRVRERWTCQLNPDKRSKGLAPWTKEEEKTMEEARERLGNRWVEIAKLLPGRSENDVKNKAYCTLRKVERKEKRARVQREKSLLVRSSFPSSSSSPPSSSLAAALLLSSAQKGQQKERRGRKGGRKGGRKGGREMTLEEVIDSKTLTEAKDTLSAIYKAALDEN 521
            +P       KRK+PTPWTP EDARLREGI++VGPRQW RI+QEF++G RSETQCYQRWERTLKPGVKTGPWT +EDA+L ACVQ+GMTRWSEI+KRIPGRLSKRVRERWTCQL+P ++  GL PWT EEE  +   R RLGNRWVEIAKL PGRSENDVKNKAYC+LRK ER+  R R ++EK+   + S  S        ++A A+      +  +K+RRG         K  RE+ LE+VID KTL++A DTLS IY+AALDE+
Sbjct:  239 TPPNPVGGRKRKVPTPWTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQERRASRVRAEQEKAKAGKGSEVS------VCAVAGAIAREGRAQDGRKKRRG---------KQRRELELEDVIDRKTLSKAHDTLSTIYQAALDED 489

The following BLAST results are available for this feature:

BLAST of NO15G02860.1 vs.

BLAST of NO15G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22385.1	1.100e-83	62.41	c-myb like protein, partial [Nannochloropsis gadit...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G02860	NO15G02860	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G02860.1	NO15G02860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G02860.1.cds1	NO15G02860.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:779633..781695-
coding sequence from alignment at chr15:779633..781695-

mRNA sequence

>NO15G02860.1 ID=NO15G02860.1|Name=NO15G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp
ATGTCCAACACCAGGGCCTTTGCAACCGCGGCACAGGCAGATAAGGGAGG
GGCCGAGTTGCTACGCGCACAGGCCATGGCCTCAGGTGCCCCAACCGCCC
TCGGCACGGCACTCCTCCCGCCAGCCACGACACAAACAGATACGGTCCCA
TCAACAAATCAAACCCGTCCCTGCATGCACATGGTTCAGGGCGAGGTGGA
AGTATATGCCGCCGGAGGGTCCGCCGGAGGAGAAGTAGGGGCCGAGATGC
CGCCCTCTCCATTCTCAGGTGGTGGTGCTGCTGCTGGCATCATCACCCGA
ACAGCCAATGCAGCTACGACACTACCACCGATTCCTTGTTCCCTCATCCC
GCAGCCACCTATGTTGTCTTCACAGGCTCCTGCTTTGCTGCCCATCGGTT
CCATGGCCCCTCCCCCTTTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCACAGCAGCCGCCCCCTCCTTCCTCCATCTCCTCCCCCTCCTCCTCCTC
TCCCTCCTCCACCAACCCCACCAAATCCTCCTTTTCCTCTGCCGCCGCCT
CCTCCACGTATCCCTCCATCGTCTCCGCAGCGGCACTTGGAGGCATGGCT
CCAGCTCCGACCCTTTTGCCTCTCCCTCTACTGACACTCTACCCAGCAGG
AGGAGGAGGAGGAGGAGCAATAGCAACAACAGCGGGGACAGCAGCATCCA
CACTCCAGCGACCCCTCATTAAAACGGCTGGAGAAGATGATGGAGTCTCG
ACCTTGTCCTCCTCCCCTGCCTACCACACCAGCAACGGCAAACGCAAGCT
CCCTACTCCATGGACCCCTGAAGAAGACGCACGTCTTAGAGAAGGCATTC
GGATCGTCGGTCCTCGACAATGGCAACGCATCGCGCAGGAGTTCCTTCAG
GGTACCCGGAGCGAGACGCAGTGCTACCAGCGTTGGGAACGTACGTTGAA
GCCGGGAGTTAAGACCGGACCGTGGACCGCGGACGAAGACGCCATTTTGC
TGGCCTGTGTGCAGGCAGGGATGACGCGCTGGTCGGAAATTTCCAAGCGG
ATCCCGGGGAGGTTGAGCAAGAGGGTTCGGGAACGATGGACGTGTCAGCT
GAACCCGGATAAGAGGAGCAAAGGCCTGGCGCCGTGGACGAAGGAGGAGG
AGAAGACAATGGAGGAGGCGAGGGAGCGACTGGGGAACAGGTGGGTGGAA
ATTGCCAAGCTGCTTCCCGGGAGGAGTGAGAATGACGTGAAGAACAAGGC
TTATTGCACTCTGCGGAAGGTTGAGCGGAAGGAGAAGCGTGCAAGGGTGC
AGAGGGAGAAATCCCTTCTGGTGAGGAGCTCCTTCCCTTCCTCGTCCTCC
TCCCCTCCTTCCTCCTCACTGGCTGCCGCTTTGCTCTTGTCCTCGGCGCA
AAAAGGACAACAGAAGGAGAGGAGGGGGAGGAAGGGAGGGAGGAAGGGAG
GGAGGAAGGGAGGGAGGGAGATGACGTTGGAGGAGGTGATAGACAGTAAG
ACGTTAACGGAAGCAAAAGATACGCTCTCAGCCATCTACAAGGCAGCTCT
GGATGAGAATGACGATGAGGAGGAGGAGGGGAAGGAGGAAGAGGAGGAGG
GACAGAAAAAGGGAGCAGGAGAGAAAACAGGGAAGGGAGGGAGGGAGGGA
GGGAGGATCAATAAATCTGTGATAGAAGATGAAGATAACGCGGAGGACTC
GGGGGAGGAAAGGGAGGAGGAAGAGGAGGAAAAAGTGCATAGGCTAAGCG
AGCGAGGGAAGCGAAGGAATGAATAGAGGAGGGTCGAGATGGCTTACTGT
TCTCGTCGAAGTCAAAGTCGTTGTTTCCGTGTAGAAAGGGAAGGTCTGTG
GTTGTCCAAGGACAGAGCATGCCAGGGGCAATCAGAGGAGAGAGGGGAAT
CGCGTCCACGAGAGGGTTGAAAAATGATCGGTACAAAGCAAAGTGTAGAT
GCGCACGTTTGAAAGACGACAAGTCGACGGTAAGGACTAGAAACAGAAAT
CTCCGACAAGGATGATGACTTTACTGAGAATTTCTCACAAATCCATATCT
ATTCACGTGTATA

protein sequence of NO15G02860.1

>NO15G02860.1-protein ID=NO15G02860.1-protein|Name=NO15G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MSNTRAFATAAQADKGGAELLRAQAMASGAPTALGTALLPPATTQTDTVP
STNQTRPCMHMVQGEVEVYAAGGSAGGEVGAEMPPSPFSGGGAAAGIITR
TANAATTLPPIPCSLIPQPPMLSSQAPALLPIGSMAPPPFQQQQQQQQQQ
PQQPPPPSSISSPSSSSPSSTNPTKSSFSSAAASSTYPSIVSAAALGGMA
PAPTLLPLPLLTLYPAGGGGGGAIATTAGTAASTLQRPLIKTAGEDDGVS
TLSSSPAYHTSNGKRKLPTPWTPEEDARLREGIRIVGPRQWQRIAQEFLQ
GTRSETQCYQRWERTLKPGVKTGPWTADEDAILLACVQAGMTRWSEISKR
IPGRLSKRVRERWTCQLNPDKRSKGLAPWTKEEEKTMEEARERLGNRWVE
IAKLLPGRSENDVKNKAYCTLRKVERKEKRARVQREKSLLVRSSFPSSSS
SPPSSSLAAALLLSSAQKGQQKERRGRKGGRKGGRKGGREMTLEEVIDSK
TLTEAKDTLSAIYKAALDENDDEEEEGKEEEEEGQKKGAGEKTGKGGREG
GRINKSVIEDEDNAEDSGEEREEEEEEKVHRLSERGKRRNE*

mRNA from alignment at chr15:779633..781695-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G02860.1 ID=NO15G02860.1|Name=NO15G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr15:779633..781695- (Nannochloropsis oceanica)
ATGTCCAACACCAGGGCCTTTGCAACCGCGGCACAGGCAGATAAGGGAGG
GGCCGAGTTGCTACGCGCACAGGCCATGGCCTCAGGTGCCCCAACCGCCC
TCGGCACGGCACTCCTCCCGCCAGCCACGACACAAACAGATACGGTCCCA
TCAACAAATCAAACCCGTCCCTGCATGCACATGGTTCAGGGCGAGGTGGA
AGTATATGCCGCCGGAGGGTCCGCCGGAGGAGAAGTAGGGGCCGAGATGC
CGCCCTCTCCATTCTCAGGTGGTGGTGCTGCTGCTGGCATCATCACCCGA
ACAGCCAATGCAGCTACGACACTACCACCGATTCCTTGTTCCCTCATCCC
GCAGCCACCTATGTTGTCTTCACAGGCTCCTGCTTTGCTGCCCATCGGTT
CCATGGCCCCTCCCCCTTTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCACAGCAGCCGCCCCCTCCTTCCTCCATCTCCTCCCCCTCCTCCTCCTC
TCCCTCCTCCACCAACCCCACCAAATCCTCCTTTTCCTCTGCCGCCGCCT
CCTCCACGTATCCCTCCATCGTCTCCGCAGCGGCACTTGGAGGCATGGCT
CCAGCTCCGACCCTTTTGCCTCTCCCTCTACTGACACTCTACCCAGCAGG
AGGAGGAGGAGGAGGAGCAATAGCAACAACAGCGGGGACAGCAGCATCCA
CACTCCAGCGACCCCTCATTAAAACGGCTGGAGAAGATGATGGAGTCTCG
ACCTTGTCCTCCTCCCCTGCCTACCACACCAGCAACGGCAAACGCAAGCT
CCCTACTCCATGGACCCCTGAAGAAGACGCACGTCTTAGAGAAGGCATTC
GGATCGTCGGTCCTCGACAATGGCAACGCATCGCGCAGGAGTTCCTTCAG
GGTACCCGGAGCGAGACGCAGTGCTACCAGCGTTGGGAACGTACGTTGAA
GCCGGGAGTTAAGACCGGACCGTGGACCGCGGACGAAGACGCCATTTTGC
TGGCCTGTGTGCAGGCAGGGATGACGCGCTGGTCGGAAATTTCCAAGCGG
ATCCCGGGGAGGTTGAGCAAGAGGGTTCGGGAACGATGGACGTGTCAGCT
GAACCCGGATAAGAGGAGCAAAGGCCTGGCGCCGTGGACGAAGGAGGAGG
AGAAGACAATGGAGGAGGCGAGGGAGCGACTGGGGAACAGGTGGGTGGAA
ATTGCCAAGCTGCTTCCCGGGAGGAGTGAGAATGACGTGAAGAACAAGGC
TTATTGCACTCTGCGGAAGGTTGAGCGGAAGGAGAAGCGTGCAAGGGTGC
AGAGGGAGAAATCCCTTCTGGTGAGGAGCTCCTTCCCTTCCTCGTCCTCC
TCCCCTCCTTCCTCCTCACTGGCTGCCGCTTTGCTCTTGTCCTCGGCGCA
AAAAGGACAACAGAAGGAGAGGAGGGGGAGGAAGGGAGGGAGGAAGGGAG
GGAGGAAGGGAGGGAGGGAGATGACGTTGGAGGAGGTGATAGACAGTAAG
ACGTTAACGGAAGCAAAAGATACGCTCTCAGCCATCTACAAGGCAGCTCT
GGATGAGAATGACGATGAGGAGGAGGAGGGGAAGGAGGAAGAGGAGGAGG
GACAGAAAAAGGGAGCAGGAGAGAAAACAGGGAAGGGAGGGAGGGAGGGA
GGGAGGATCAATAAATCTGTGATAGAAGATGAAGATAACGCGGAGGACTC
GGGGGAGGAAAGGGAGGAGGAAGAGGAGGAAAAAGTGCATAGGCTAAGCG
AGCGAGGGAAGCGAAGGAATGAATAGAGGAGGGTCGAGATGGCTTACTGT
TCTCGTCGAAGTCAAAGTCGTTGTTTCCGTGTAGAAAGGGAAGGTCTGTG
GTTGTCCAAGGACAGAGCATGCCAGGGGCAATCAGAGGAGAGAGGGGAAT
CGCGTCCACGAGAGGGTTGAAAAATGATCGGTACAAAGCAAAGTGTAGAT
GCGCACGTTTGAAAGACGACAAGTCGACGGTAAGGACTAGAAACAGAAAT
CTCCGACAAGGATGATGACTTTACTGAGAATTTCTCACAAATCCATATCT
ATTCACGTGTATA

Coding sequence (CDS) from alignment at chr15:779633..781695-

>NO15G02860.1 ID=NO15G02860.1|Name=NO15G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr15:779633..781695- (Nannochloropsis oceanica)
ATGTCCAACACCAGGGCCTTTGCAACCGCGGCACAGGCAGATAAGGGAGG
GGCCGAGTTGCTACGCGCACAGGCCATGGCCTCAGGTGCCCCAACCGCCC
TCGGCACGGCACTCCTCCCGCCAGCCACGACACAAACAGATACGGTCCCA
TCAACAAATCAAACCCGTCCCTGCATGCACATGGTTCAGGGCGAGGTGGA
AGTATATGCCGCCGGAGGGTCCGCCGGAGGAGAAGTAGGGGCCGAGATGC
CGCCCTCTCCATTCTCAGGTGGTGGTGCTGCTGCTGGCATCATCACCCGA
ACAGCCAATGCAGCTACGACACTACCACCGATTCCTTGTTCCCTCATCCC
GCAGCCACCTATGTTGTCTTCACAGGCTCCTGCTTTGCTGCCCATCGGTT
CCATGGCCCCTCCCCCTTTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCACAGCAGCCGCCCCCTCCTTCCTCCATCTCCTCCCCCTCCTCCTCCTC
TCCCTCCTCCACCAACCCCACCAAATCCTCCTTTTCCTCTGCCGCCGCCT
CCTCCACGTATCCCTCCATCGTCTCCGCAGCGGCACTTGGAGGCATGGCT
CCAGCTCCGACCCTTTTGCCTCTCCCTCTACTGACACTCTACCCAGCAGG
AGGAGGAGGAGGAGGAGCAATAGCAACAACAGCGGGGACAGCAGCATCCA
CACTCCAGCGACCCCTCATTAAAACGGCTGGAGAAGATGATGGAGTCTCG
ACCTTGTCCTCCTCCCCTGCCTACCACACCAGCAACGGCAAACGCAAGCT
CCCTACTCCATGGACCCCTGAAGAAGACGCACGTCTTAGAGAAGGCATTC
GGATCGTCGGTCCTCGACAATGGCAACGCATCGCGCAGGAGTTCCTTCAG
GGTACCCGGAGCGAGACGCAGTGCTACCAGCGTTGGGAACGTACGTTGAA
GCCGGGAGTTAAGACCGGACCGTGGACCGCGGACGAAGACGCCATTTTGC
TGGCCTGTGTGCAGGCAGGGATGACGCGCTGGTCGGAAATTTCCAAGCGG
ATCCCGGGGAGGTTGAGCAAGAGGGTTCGGGAACGATGGACGTGTCAGCT
GAACCCGGATAAGAGGAGCAAAGGCCTGGCGCCGTGGACGAAGGAGGAGG
AGAAGACAATGGAGGAGGCGAGGGAGCGACTGGGGAACAGGTGGGTGGAA
ATTGCCAAGCTGCTTCCCGGGAGGAGTGAGAATGACGTGAAGAACAAGGC
TTATTGCACTCTGCGGAAGGTTGAGCGGAAGGAGAAGCGTGCAAGGGTGC
AGAGGGAGAAATCCCTTCTGGTGAGGAGCTCCTTCCCTTCCTCGTCCTCC
TCCCCTCCTTCCTCCTCACTGGCTGCCGCTTTGCTCTTGTCCTCGGCGCA
AAAAGGACAACAGAAGGAGAGGAGGGGGAGGAAGGGAGGGAGGAAGGGAG
GGAGGAAGGGAGGGAGGGAGATGACGTTGGAGGAGGTGATAGACAGTAAG
ACGTTAACGGAAGCAAAAGATACGCTCTCAGCCATCTACAAGGCAGCTCT
GGATGAGAATGACGATGAGGAGGAGGAGGGGAAGGAGGAAGAGGAGGAGG
GACAGAAAAAGGGAGCAGGAGAGAAAACAGGGAAGGGAGGGAGGGAGGGA
GGGAGGATCAATAAATCTGTGATAGAAGATGAAGATAACGCGGAGGACTC
GGGGGAGGAAAGGGAGGAGGAAGAGGAGGAAAAAGTGCATAGGCTAAGCG
AGCGAGGGAAGCGAAGGAATGAATAG

Synonyms

Publications