NO15G02820.1, NO15G02820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02820.1
Unique NameNO15G02820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2293
Alignment locationchr15:770595..772887 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:770595..772887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02820.1 vs.
Match: EWM22352.1 (conserved uncharacterized protein [Nannochloropsis gaditana])

HSP 1 Score: 586.3 bits (1510), Expect = 1.300e-163
Identity = 409/727 (56.26%), Postives = 475/727 (65.34%), Query Frame = 0 
Query:    1 MNFLLGGGGPVRPNLPPHLMDEGERGADLVEKATSDILLAVDWAINMEVVDALNRASDQEIKREIIRQIRKRLQHRSTRVVHMALDLIETVVKNCGPSVHREVATPKFMASMSRIARNYLDRTGKENLEVGEKAMDLIQAWGEAFLPMSQSLPLFSRTYHELRREGMPFRQQYDETKVPIMTPPPSAPSARGSGQFNFAGEIGGGEGGR----DGGEEVDLLKMVETSETMLHEILYSIESSHELGSGNEVLHAVLGQCAKLGRVLQQEIESKVLTGAEDLEQYFGANDQLQATLHLYQGMKDRTIALPLPQEGRGQGRAGGGEGQQQPEKELISFDDDFLVGLGDGGGKAGGDTKVSAAELGTTLTTSNAAAAAGGGE-----TEAPMLAPSRRDSFGRSRRGSRGSAGSRGAGDDLLDLGNLDAGSNAN--GVGGGNALAASRTGTGAFSSVSSP-ASDPPQFAIMPA----------PPADPFASGPPVPILPPPRSLGSPPGKQGNTTTAGSSSSSSSSSSNSNINSSSSSSSSSLKYPSTGVAPQPPSAFFSLPGGVGGSMGGGMGGGLNGGSTHMSF-VGSTQPTSSATGMQASPPLSSGFVSTGG-GSLSVSQSGGDGGGQRTMYGAQSDSFLQQHQQFAPSSYPPAVPGGWQQQQ---------W---PQQSQPQPWQ---QASEPQQGQRPSSAG-----PQPPKPQAQQDNPFDAFM 684
            MN+LLGGGGPVRPNLPPHLMDEGER A LVEKATSDILLAVDWA+NMEVVDALNR+S+Q +KREIIRQIRKRLQHRSTRVVHMAL+LIETVVKNCGPSVH+EVATPKFMA+M+R+AR Y +RTGKENL+V +KAMDLIQ+WGEAFLPM+  LPLFS+TYH+LRREG+ FR QYDETKVPIMTPPP+AP+ RGSG+F F G + G   GR     GGE   LLKMVE SE+ML +ILYSIESS ELGSGNEVLHAV+GQCAKL R  Q+ IE+KVL+GAED+E Y  ANDQLQA L LY+GMK  T+ALPLPQ+ R  G  G GE     E+EL+SFDDDFL GL  G   +G D+K+SA E+            AGGG+     + +PML PSRRDS  RSRRGSRGSAGSRGAGDDLLDL NLD  S AN  G G G A     T  G       P  + PPQ A  PA            ADPFASG P+PILPPPRSLGSPP       T  S+++S S ++N   N+ +   S   + P T + PQP      + GG  G    GM GG + G    S   G+    S  +    +  + S   STGG  SL  SQSGG  GG  +  G+ +      HQ    + + P  P   QQ+Q         W   PQQ Q   W    Q    QQGQR  S G         + Q QQ+NPFDAFM
Sbjct:    1 MNYLLGGGGPVRPNLPPHLMDEGERAAGLVEKATSDILLAVDWAMNMEVVDALNRSSEQAVKREIIRQIRKRLQHRSTRVVHMALELIETVVKNCGPSVHKEVATPKFMATMARVARTYSERTGKENLQVADKAMDLIQSWGEAFLPMAHQLPLFSQTYHQLRREGLTFRTQYDETKVPIMTPPPTAPTHRGSGEFAFEGALEGESPGRVADQQGGE--SLLKMVENSESMLQDILYSIESSKELGSGNEVLHAVVGQCAKLSRACQESIEAKVLSGAEDVEVYLAANDQLQAALQLYEGMKAGTVALPLPQDRRPPGAVGQGE-----ERELMSFDDDFLTGL--GSEISGKDSKLSANEM------QKKGDEAGGGKQASVPSVSPMLPPSRRDSISRSRRGSRGSAGSRGAGDDLLDLSNLDLASTANTGGRGEGGAQLGLETAVGPSPHDRDPWRATPPQIA--PASQTLTASASMQAADPFASGGPLPILPPPRSLGSPP-------TQASTNASGSLAANGRDNTITDMHS---QIPLTTLTPQPS---LLVAGGSVGMQTTGMTGGWDEGELKGSNPSGAPHRMSLLSSSMNAQAVPSSHTSTGGFTSLGSSQSGGVTGGFVSGEGSMA------HQ----TPFQPVKPQSQQQKQNGKGQDFSDWLPQPQQQQQLQWPPVVQQQTMQQGQRVVSTGLSTTQQHDRQQQQQQENPFDAFM 687
The following BLAST results are available for this feature:
BLAST of NO15G02820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22352.11.300e-16356.26conserved uncharacterized protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02820NO15G02820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02820.1NO15G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02820.1.cds1NO15G02820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02820.1 ID=NO15G02820.1|Name=NO15G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp
ACAGGCATCCTGAAAGCACCGCGGGACCTTCAGCATCCAACCAATCGAGC
ACAAGGCTAGTGCTCTTCATCTGCACGCTCCTTATCACAAAAGCAACAGC
AAGAACAGCACATCGAATTCTCCAGCAGCACACGCAAACACACCGGATCA
CATCCCTCGCAACAAGGGCAAGCCATGAACTTCCTCCTCGGTGGCGGCGG
ACCTGTGCGGCCCAATTTGCCCCCTCATCTCATGGATGAAGGGGAGCGTG
GGGCAGACCTCGTGGAAAAAGCAACCTCCGACATTTTGCTTGCCGTCGAT
TGGGCCATCAATATGGAAGTCGTCGACGCATTAAACCGTGCCAGCGACCA
AGAAATCAAGCGGGAGATAATCCGTCAGATTCGAAAGAGGCTGCAGCACC
GCTCCACCCGCGTCGTGCACATGGCGTTGGATCTGATCGAGACCGTGGTT
AAGAACTGCGGACCCTCCGTGCACCGCGAAGTGGCCACGCCTAAATTCAT
GGCGAGCATGTCAAGAATCGCTCGGAACTACCTGGACCGAACGGGAAAGG
AAAATCTGGAGGTGGGGGAGAAGGCAATGGACTTGATCCAGGCGTGGGGA
GAAGCGTTTCTGCCTATGTCACAGAGCCTGCCATTGTTTTCTCGGACCTA
CCACGAGTTACGAAGGGAGGGGATGCCGTTCCGACAGCAGTACGATGAGA
CCAAGGTCCCCATTATGACGCCTCCGCCCTCGGCGCCTTCAGCAAGGGGA
AGTGGACAGTTCAACTTCGCAGGAGAGATTGGAGGGGGGGAAGGAGGGAG
GGACGGGGGGGAAGAGGTGGATTTGTTGAAAATGGTGGAGACTAGCGAGA
CGATGCTTCACGAGATTTTGTATTCGATTGAGAGCTCTCATGAATTAGGG
AGTGGTAATGAGGTGTTGCATGCGGTGTTGGGGCAGTGCGCGAAATTGGG
TAGGGTCTTACAGCAGGAAATCGAGTCCAAAGTTCTGACAGGAGCGGAGG
ATTTGGAGCAGTATTTTGGGGCCAATGACCAATTGCAGGCCACGTTACAT
CTATACCAAGGCATGAAAGATCGGACGATAGCCTTACCGTTGCCCCAGGA
AGGACGGGGTCAGGGACGGGCGGGGGGTGGGGAGGGGCAGCAGCAGCCGG
AGAAGGAGCTGATTTCGTTTGATGATGATTTTTTGGTTGGTCTGGGGGAT
GGTGGAGGGAAGGCGGGGGGGGATACGAAAGTGTCGGCGGCAGAGCTGGG
GACGACTCTCACCACCAGCAATGCTGCTGCTGCCGCTGGTGGTGGCGAGA
CAGAAGCTCCCATGCTGGCCCCGTCCCGTCGGGACAGCTTTGGGCGAAGT
CGTCGGGGGTCGAGGGGGAGTGCGGGGAGCAGGGGAGCAGGGGATGATTT
GCTGGATCTAGGCAATTTAGATGCTGGAAGCAATGCGAATGGAGTGGGTG
GAGGAAACGCCCTTGCCGCCTCTCGTACAGGCACGGGTGCCTTCTCGTCC
GTGTCCAGCCCAGCGAGCGATCCCCCTCAATTCGCTATCATGCCTGCACC
TCCCGCCGACCCCTTTGCCTCCGGTCCTCCTGTCCCCATCCTCCCTCCTC
CCCGCTCTCTAGGATCACCGCCCGGAAAGCAAGGCAACACTACCACTGCG
GGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAATAG
CAGCAGCAGCAGCAGTAGCAGTAGTTTGAAGTATCCGTCGACGGGTGTGG
CGCCGCAGCCACCTTCAGCCTTCTTTTCTTTGCCGGGAGGAGTAGGAGGG
AGTATGGGGGGAGGGATGGGCGGAGGGCTGAACGGGGGCAGTACTCACAT
GTCTTTCGTTGGCTCCACACAACCTACCTCGTCGGCGACTGGCATGCAAG
CATCGCCGCCACTGTCTTCCGGCTTCGTCTCGACGGGTGGGGGGAGCTTG
AGTGTGAGCCAATCGGGTGGGGATGGGGGAGGACAAAGGACGATGTATGG
TGCGCAAAGTGATAGCTTTTTGCAACAGCACCAACAGTTTGCGCCATCAT
CCTATCCGCCTGCCGTGCCTGGAGGGTGGCAGCAGCAGCAATGGCCCCAG
CAATCGCAGCCACAGCCGTGGCAACAAGCATCGGAGCCGCAGCAGGGACA
GAGACCATCGTCTGCTGGGCCGCAGCCACCAAAGCCACAGGCGCAGCAAG
ACAATCCCTTCGACGCATTTATGTAGAATTGCATTTATGTGTGTTACTAG
AGTATGGAGAAGATGAAAGATAAATAAATGAAAACAGTTGGGT
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protein sequence of NO15G02820.1

>NO15G02820.1-protein ID=NO15G02820.1-protein|Name=NO15G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MNFLLGGGGPVRPNLPPHLMDEGERGADLVEKATSDILLAVDWAINMEVV
DALNRASDQEIKREIIRQIRKRLQHRSTRVVHMALDLIETVVKNCGPSVH
REVATPKFMASMSRIARNYLDRTGKENLEVGEKAMDLIQAWGEAFLPMSQ
SLPLFSRTYHELRREGMPFRQQYDETKVPIMTPPPSAPSARGSGQFNFAG
EIGGGEGGRDGGEEVDLLKMVETSETMLHEILYSIESSHELGSGNEVLHA
VLGQCAKLGRVLQQEIESKVLTGAEDLEQYFGANDQLQATLHLYQGMKDR
TIALPLPQEGRGQGRAGGGEGQQQPEKELISFDDDFLVGLGDGGGKAGGD
TKVSAAELGTTLTTSNAAAAAGGGETEAPMLAPSRRDSFGRSRRGSRGSA
GSRGAGDDLLDLGNLDAGSNANGVGGGNALAASRTGTGAFSSVSSPASDP
PQFAIMPAPPADPFASGPPVPILPPPRSLGSPPGKQGNTTTAGSSSSSSS
SSSNSNINSSSSSSSSSLKYPSTGVAPQPPSAFFSLPGGVGGSMGGGMGG
GLNGGSTHMSFVGSTQPTSSATGMQASPPLSSGFVSTGGGSLSVSQSGGD
GGGQRTMYGAQSDSFLQQHQQFAPSSYPPAVPGGWQQQQWPQQSQPQPWQ
QASEPQQGQRPSSAGPQPPKPQAQQDNPFDAFM*
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mRNA from alignment at chr15:770595..772887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02820.1 ID=NO15G02820.1|Name=NO15G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at chr15:770595..772887+ (Nannochloropsis oceanica)
ACAGGCATCCTGAAAGCACCGCGGGACCTTCAGCATCCAACCAATCGAGC
ACAAGGCTAGTGCTCTTCATCTGCACGCTCCTTATCACAAAAGCAACAGC
AAGAACAGCACATCGAATTCTCCAGCAGCACACGCAAACACACCGGATCA
CATCCCTCGCAACAAGGGCAAGCCATGAACTTCCTCCTCGGTGGCGGCGG
ACCTGTGCGGCCCAATTTGCCCCCTCATCTCATGGATGAAGGGGAGCGTG
GGGCAGACCTCGTGGAAAAAGCAACCTCCGACATTTTGCTTGCCGTCGAT
TGGGCCATCAATATGGAAGTCGTCGACGCATTAAACCGTGCCAGCGACCA
AGAAATCAAGCGGGAGATAATCCGTCAGATTCGAAAGAGGCTGCAGCACC
GCTCCACCCGCGTCGTGCACATGGCGTTGGATCTGATCGAGACCGTGGTT
AAGAACTGCGGACCCTCCGTGCACCGCGAAGTGGCCACGCCTAAATTCAT
GGCGAGCATGTCAAGAATCGCTCGGAACTACCTGGACCGAACGGGAAAGG
AAAATCTGGAGGTGGGGGAGAAGGCAATGGACTTGATCCAGGCGTGGGGA
GAAGCGTTTCTGCCTATGTCACAGAGCCTGCCATTGTTTTCTCGGACCTA
CCACGAGTTACGAAGGGAGGGGATGCCGTTCCGACAGCAGTACGATGAGA
CCAAGGTCCCCATTATGACGCCTCCGCCCTCGGCGCCTTCAGCAAGGGGA
AGTGGACAGTTCAACTTCGCAGGAGAGATTGGAGGGGGGGAAGGAGGGAG
GGACGGGGGGGAAGAGGTGGATTTGTTGAAAATGGTGGAGACTAGCGAGA
CGATGCTTCACGAGATTTTGTATTCGATTGAGAGCTCTCATGAATTAGGG
AGTGGTAATGAGGTGTTGCATGCGGTGTTGGGGCAGTGCGCGAAATTGGG
TAGGGTCTTACAGCAGGAAATCGAGTCCAAAGTTCTGACAGGAGCGGAGG
ATTTGGAGCAGTATTTTGGGGCCAATGACCAATTGCAGGCCACGTTACAT
CTATACCAAGGCATGAAAGATCGGACGATAGCCTTACCGTTGCCCCAGGA
AGGACGGGGTCAGGGACGGGCGGGGGGTGGGGAGGGGCAGCAGCAGCCGG
AGAAGGAGCTGATTTCGTTTGATGATGATTTTTTGGTTGGTCTGGGGGAT
GGTGGAGGGAAGGCGGGGGGGGATACGAAAGTGTCGGCGGCAGAGCTGGG
GACGACTCTCACCACCAGCAATGCTGCTGCTGCCGCTGGTGGTGGCGAGA
CAGAAGCTCCCATGCTGGCCCCGTCCCGTCGGGACAGCTTTGGGCGAAGT
CGTCGGGGGTCGAGGGGGAGTGCGGGGAGCAGGGGAGCAGGGGATGATTT
GCTGGATCTAGGCAATTTAGATGCTGGAAGCAATGCGAATGGAGTGGGTG
GAGGAAACGCCCTTGCCGCCTCTCGTACAGGCACGGGTGCCTTCTCGTCC
GTGTCCAGCCCAGCGAGCGATCCCCCTCAATTCGCTATCATGCCTGCACC
TCCCGCCGACCCCTTTGCCTCCGGTCCTCCTGTCCCCATCCTCCCTCCTC
CCCGCTCTCTAGGATCACCGCCCGGAAAGCAAGGCAACACTACCACTGCG
GGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACATCAATAG
CAGCAGCAGCAGCAGTAGCAGTAGTTTGAAGTATCCGTCGACGGGTGTGG
CGCCGCAGCCACCTTCAGCCTTCTTTTCTTTGCCGGGAGGAGTAGGAGGG
AGTATGGGGGGAGGGATGGGCGGAGGGCTGAACGGGGGCAGTACTCACAT
GTCTTTCGTTGGCTCCACACAACCTACCTCGTCGGCGACTGGCATGCAAG
CATCGCCGCCACTGTCTTCCGGCTTCGTCTCGACGGGTGGGGGGAGCTTG
AGTGTGAGCCAATCGGGTGGGGATGGGGGAGGACAAAGGACGATGTATGG
TGCGCAAAGTGATAGCTTTTTGCAACAGCACCAACAGTTTGCGCCATCAT
CCTATCCGCCTGCCGTGCCTGGAGGGTGGCAGCAGCAGCAATGGCCCCAG
CAATCGCAGCCACAGCCGTGGCAACAAGCATCGGAGCCGCAGCAGGGACA
GAGACCATCGTCTGCTGGGCCGCAGCCACCAAAGCCACAGGCGCAGCAAG
ACAATCCCTTCGACGCATTTATGTAGAATTGCATTTATGTGTGTTACTAG
AGTATGGAGAAGATGAAAGATAAATAAATGAAAACAGTTGGGT
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Coding sequence (CDS) from alignment at chr15:770595..772887+

>NO15G02820.1 ID=NO15G02820.1|Name=NO15G02820.1|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at chr15:770595..772887+ (Nannochloropsis oceanica)
ATGAACTTCCTCCTCGGTGGCGGCGGACCTGTGCGGCCCAATTTGCCCCC
TCATCTCATGGATGAAGGGGAGCGTGGGGCAGACCTCGTGGAAAAAGCAA
CCTCCGACATTTTGCTTGCCGTCGATTGGGCCATCAATATGGAAGTCGTC
GACGCATTAAACCGTGCCAGCGACCAAGAAATCAAGCGGGAGATAATCCG
TCAGATTCGAAAGAGGCTGCAGCACCGCTCCACCCGCGTCGTGCACATGG
CGTTGGATCTGATCGAGACCGTGGTTAAGAACTGCGGACCCTCCGTGCAC
CGCGAAGTGGCCACGCCTAAATTCATGGCGAGCATGTCAAGAATCGCTCG
GAACTACCTGGACCGAACGGGAAAGGAAAATCTGGAGGTGGGGGAGAAGG
CAATGGACTTGATCCAGGCGTGGGGAGAAGCGTTTCTGCCTATGTCACAG
AGCCTGCCATTGTTTTCTCGGACCTACCACGAGTTACGAAGGGAGGGGAT
GCCGTTCCGACAGCAGTACGATGAGACCAAGGTCCCCATTATGACGCCTC
CGCCCTCGGCGCCTTCAGCAAGGGGAAGTGGACAGTTCAACTTCGCAGGA
GAGATTGGAGGGGGGGAAGGAGGGAGGGACGGGGGGGAAGAGGTGGATTT
GTTGAAAATGGTGGAGACTAGCGAGACGATGCTTCACGAGATTTTGTATT
CGATTGAGAGCTCTCATGAATTAGGGAGTGGTAATGAGGTGTTGCATGCG
GTGTTGGGGCAGTGCGCGAAATTGGGTAGGGTCTTACAGCAGGAAATCGA
GTCCAAAGTTCTGACAGGAGCGGAGGATTTGGAGCAGTATTTTGGGGCCA
ATGACCAATTGCAGGCCACGTTACATCTATACCAAGGCATGAAAGATCGG
ACGATAGCCTTACCGTTGCCCCAGGAAGGACGGGGTCAGGGACGGGCGGG
GGGTGGGGAGGGGCAGCAGCAGCCGGAGAAGGAGCTGATTTCGTTTGATG
ATGATTTTTTGGTTGGTCTGGGGGATGGTGGAGGGAAGGCGGGGGGGGAT
ACGAAAGTGTCGGCGGCAGAGCTGGGGACGACTCTCACCACCAGCAATGC
TGCTGCTGCCGCTGGTGGTGGCGAGACAGAAGCTCCCATGCTGGCCCCGT
CCCGTCGGGACAGCTTTGGGCGAAGTCGTCGGGGGTCGAGGGGGAGTGCG
GGGAGCAGGGGAGCAGGGGATGATTTGCTGGATCTAGGCAATTTAGATGC
TGGAAGCAATGCGAATGGAGTGGGTGGAGGAAACGCCCTTGCCGCCTCTC
GTACAGGCACGGGTGCCTTCTCGTCCGTGTCCAGCCCAGCGAGCGATCCC
CCTCAATTCGCTATCATGCCTGCACCTCCCGCCGACCCCTTTGCCTCCGG
TCCTCCTGTCCCCATCCTCCCTCCTCCCCGCTCTCTAGGATCACCGCCCG
GAAAGCAAGGCAACACTACCACTGCGGGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAACATCAATAGCAGCAGCAGCAGCAGTAGCAGTAG
TTTGAAGTATCCGTCGACGGGTGTGGCGCCGCAGCCACCTTCAGCCTTCT
TTTCTTTGCCGGGAGGAGTAGGAGGGAGTATGGGGGGAGGGATGGGCGGA
GGGCTGAACGGGGGCAGTACTCACATGTCTTTCGTTGGCTCCACACAACC
TACCTCGTCGGCGACTGGCATGCAAGCATCGCCGCCACTGTCTTCCGGCT
TCGTCTCGACGGGTGGGGGGAGCTTGAGTGTGAGCCAATCGGGTGGGGAT
GGGGGAGGACAAAGGACGATGTATGGTGCGCAAAGTGATAGCTTTTTGCA
ACAGCACCAACAGTTTGCGCCATCATCCTATCCGCCTGCCGTGCCTGGAG
GGTGGCAGCAGCAGCAATGGCCCCAGCAATCGCAGCCACAGCCGTGGCAA
CAAGCATCGGAGCCGCAGCAGGGACAGAGACCATCGTCTGCTGGGCCGCA
GCCACCAAAGCCACAGGCGCAGCAAGACAATCCCTTCGACGCATTTATGT
AG
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Synonyms
Publications