NO15G02790.1, NO15G02790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02790.1
Unique NameNO15G02790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr15:764499..766392 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:764499..766392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02790.1 vs.
Match: EWM22349.1 (cdk5 regulatory subunit associated protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 381.7 bits (979), Expect = 3.800e-102
Identity = 251/555 (45.23%), Postives = 334/555 (60.18%), Query Frame = 0 
Query:    3 PATSSLSSNDPNKVPIYVPYQKLTDWLVNRKQLPANWHESLKLVKEDLRAALRGLEEGGGEVAVWVKGKESSAVTYYTCQQIMSLLERTQQGRTKNIFGSYTVAVLKTWDSILRAYRKDNLFLGEAAQLLATHTTYTCPAVRRRIAGYDKQIEDCDRRMGEYRKAMTEGKVRFHMACGEWSLSPGEDVWGEGKEEVGEADEKEGKE---WRRSLVEMAQQELPSMMEEVEKLLCAEEVAEALLYYQQVWCFLHSYERKEDGREEEDTEITTEFFPVLSKVRRGEKLLAVEGVEEEEEEEEGQGVMEINWGAGAPSSDEVVPEGEGGGI---DWNEGGGGGPENGSSFEPVDNERAVNFTSTSSSSSTDASPPSATVASPKTGLEGQQ-GGSLLADASLRAGLVNDMMELESFLQQRRLEVGDTSNVVFVG-QFQGSHAALQQQSVSMVDRYLNAVKRALGVLREKRLQQLWLVCSSPVYADRVVQGLMQYRRRVRKLDKARRETEGRREEAAEALAKALPEYEAMAAATTALKKRVEESLKELFKGRDILITGGV 550
            P  S+  SN    +P+YVPY KL DWL++RKQLP +W E LK VK  L+  LR LE GGGEVA WVKGKESSA+ +YTC QIMSLLE  QQGRTKNIFGSYT A+LK WD+ILRAYRK+N++LGEAA+LLATHT YTCP+++RRI GY+KQ+EDC+RR+ +YR+A+ EG  R+  AC  W L   +   G G+E    A    G E   WR  L  MA++ELP  +  VE+ LCAE + +AL YY +   FLH++   ++ R E ++    +      K   G +   V  VE   E+               P   +    G   G    D    GGG P + SS +    +  +N +  S   S  A   S T ++ +T  EG     S + + + R  L N+++ELE+FLQQRRLEVGD  +V+ V    + +   L   S   V+  L+ V+ AL  ++ KRLQQL L+ SSP Y +RV   + Q RRR+  L+  RRETE RR++    LA+ +PE EA AAAT ALKK++E SL+EL+ GR I+ITGGV
Sbjct:   65 PFLSTKKSNS-GAIPVYVPYSKLQDWLIDRKQLPRDWTEKLKNVKSLLQEGLRELETGGGEVADWVKGKESSALHFYTCTQIMSLLEGAQQGRTKNIFGSYTSALLKLWDNILRAYRKENVYLGEAARLLATHTMYTCPSLQRRITGYEKQVEDCERRLNDYRQAIKEGNARYRAACEAWGLDVEQT--GIGRERKSLAPPPNGAEKEVWRSLLTRMAEKELPEALTAVERELCAELIGKALDYYDRFRRFLHTH---DEDRTEANSAADEQ------KNEEGGRKTCVVEVEGRLEDRFSTLCQARCHRRACPREQKKQSLGAETGANDQDARRMGGGIPADESSVQE-GEKVGMNRSGASGHCSWVAGGHSCTSSAWRT--EGDNPKASPIGNPAFRKALTNELLELEAFLQQRRLEVGDADHVLLVSIHCREAVGGLLDNSKEAVETCLSQVQTALDAVQGKRLQQLLLLQSSPAYLERVAASMEQARRRLVNLEDRRRETEARRKDILLKLAQTVPEREATAAATIALKKKMEASLQELYNGRSIVITGGV 604
The following BLAST results are available for this feature:
BLAST of NO15G02790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22349.13.800e-10245.23cdk5 regulatory subunit associated protein 3 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02790NO15G02790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02790.1NO15G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02790.1.cds1NO15G02790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02790.1.cds2NO15G02790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02790.1 ID=NO15G02790.1|Name=NO15G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
ATGGCGCCAGCAACCTCGTCATTGTCGTCGAATGACCCGAACAAAGTCCC
TATCTACGTGCCTTATCAAAAATTGACTGATTGGCTCGTGAACAGAAAGC
AGCTCCCGGCCAACTGGCATGAGTCGCTTAAGCTTGTGAAAGAGGATTTA
CGAGCAGCCCTACGTGGGTTGGAGGAGGGTGGGGGAGAAGTTGCGGTGTG
GGTCAAAGGGAAGGAGAGTAGCGCCGTCACGTACTACACTTGTCAGCAAA
TCATGTCTCTGCTGGAAAGGACACAGCAAGGCCGCACGAAGAATATCTTC
GGGTCATACACCGTGGCGGTGCTCAAGACGTGGGATAGCATTTTGCGCGC
GTATCGCAAGGACAACCTTTTTTTAGGGGAAGCTGCGCAGTTACTGGCGA
CACATACCACCTACACTTGTCCCGCAGTGCGTCGTCGAATTGCGGGGTAT
GATAAGCAGATCGAGGACTGCGATCGACGAATGGGAGAATATAGAAAAGC
AATGACGGAGGGAAAAGTCCGCTTTCACATGGCGTGTGGAGAGTGGAGTT
TGAGCCCTGGGGAGGATGTTTGGGGGGAGGGCAAGGAGGAGGTGGGGGAA
GCGGATGAAAAGGAGGGAAAAGAGTGGAGGAGGTCCTTGGTCGAGATGGC
TCAGCAGGAATTACCGAGTATGATGGAGGAGGTAGAGAAATTGTTGTGTG
CGGAGGAAGTGGCGGAGGCCTTACTGTACTATCAGCAGGTGTGGTGCTTC
CTTCATTCGTACGAGCGGAAGGAGGATGGGAGGGAGGAAGAGGATACAGA
AATTACGACGGAGTTCTTTCCTGTGCTCTCCAAGGTGCGACGAGGGGAGA
AGCTGTTAGCGGTAGAGGGAGTGGAGGAGGAGGAGGAGGAGGAGGAAGGG
CAGGGGGTGATGGAGATTAATTGGGGTGCTGGTGCGCCTTCATCGGATGA
GGTTGTGCCCGAGGGAGAAGGGGGAGGGATTGATTGGAATGAAGGAGGCG
GAGGAGGACCGGAGAACGGCAGCAGCTTCGAGCCTGTCGATAACGAAAGA
GCAGTGAACTTCACATCGACCAGCAGCAGCAGCAGTACTGACGCGAGCCC
CCCATCCGCGACCGTGGCATCACCCAAAACGGGTCTGGAGGGGCAGCAGG
GGGGATCCCTCCTTGCGGACGCCAGTCTTCGGGCCGGGCTTGTGAACGAT
ATGATGGAATTGGAGTCCTTCTTACAGCAGCGGCGTCTGGAGGTTGGAGA
CACGAGCAATGTCGTTTTTGTGGGGCAGTTTCAGGGGTCGCATGCCGCGT
TGCAGCAGCAGTCCGTAAGTATGGTAGACAGATATCTTAATGCGGTCAAG
CGTGCCTTGGGTGTGTTACGTGAGAAACGGCTGCAGCAATTGTGGCTAGT
GTGTTCTTCGCCTGTGTATGCCGACAGGGTAGTGCAGGGATTAATGCAGT
ATCGACGGCGTGTGCGGAAGCTGGACAAGGCAAGACGGGAGACGGAGGGA
CGGAGGGAGGAAGCGGCGGAGGCGTTGGCCAAGGCGTTGCCGGAATATGA
GGCGATGGCGGCGGCGACGACTGCCTTGAAGAAAAGGGTGGAAGAGTCGT
TAAAGGAGTTGTTTAAGGGTAGGGATATTTTGATCACCGGGGGCGTAAAT
GCACTGTGA
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protein sequence of NO15G02790.1

>NO15G02790.1-protein ID=NO15G02790.1-protein|Name=NO15G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MAPATSSLSSNDPNKVPIYVPYQKLTDWLVNRKQLPANWHESLKLVKEDL
RAALRGLEEGGGEVAVWVKGKESSAVTYYTCQQIMSLLERTQQGRTKNIF
GSYTVAVLKTWDSILRAYRKDNLFLGEAAQLLATHTTYTCPAVRRRIAGY
DKQIEDCDRRMGEYRKAMTEGKVRFHMACGEWSLSPGEDVWGEGKEEVGE
ADEKEGKEWRRSLVEMAQQELPSMMEEVEKLLCAEEVAEALLYYQQVWCF
LHSYERKEDGREEEDTEITTEFFPVLSKVRRGEKLLAVEGVEEEEEEEEG
QGVMEINWGAGAPSSDEVVPEGEGGGIDWNEGGGGGPENGSSFEPVDNER
AVNFTSTSSSSSTDASPPSATVASPKTGLEGQQGGSLLADASLRAGLVND
MMELESFLQQRRLEVGDTSNVVFVGQFQGSHAALQQQSVSMVDRYLNAVK
RALGVLREKRLQQLWLVCSSPVYADRVVQGLMQYRRRVRKLDKARRETEG
RREEAAEALAKALPEYEAMAAATTALKKRVEESLKELFKGRDILITGGVN
AL*
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mRNA from alignment at chr15:764499..766392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02790.1 ID=NO15G02790.1|Name=NO15G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp|location=Sequence derived from alignment at chr15:764499..766392+ (Nannochloropsis oceanica)
ATGGCGCCAGCAACCTCGTCATTGTCGTCGAATGACCCGAACAAAGTCCC
TATCTACGTGCCTTATCAAAAATTGACTGGTAAGAGGGACCTCGGTAAGA
GAGACCTCATTCTCCGTACCTTTGCTGCCACACCGTTGGCGTGCTTGCGG
CGTCTTGTGATGCTGTACAATTGGAATGACCACATCGCCGCAGGCAAAAG
GCAGGGGACGCTATAAAGGAAAAGCTGCCAGGATTAGATGCGCGCTTTCT
GTTTGCTCACTCCTTCCCACCACTTGTCTTCCGTCACCCCCCGATCCGCA
ACACACAAACATAGATTGGCTCGTGAACAGAAAGCAGCTCCCGGCCAACT
GGCATGAGTCGCTTAAGCTTGTGAAAGAGGATTTACGAGCAGCCCTACGT
GGGTTGGAGGAGGGTGGGGGAGAAGTTGCGGTGTGGGTCAAAGGGAAGGA
GAGTAGCGCCGTCACGTACTACACTTGTCAGCAAATCATGTCTCTGCTGG
AAAGGACACAGCAAGGCCGCACGAAGAATATCTTCGGGTCATACACCGTG
GCGGTGCTCAAGACGTGGGATAGCATTTTGCGCGCGTATCGCAAGGACAA
CCTTTTTTTAGGGGAAGCTGCGCAGTTACTGGCGACACATACCACCTACA
CTTGTCCCGCAGTGCGTCGTCGAATTGCGGGGTATGATAAGCAGATCGAG
GACTGCGATCGACGAATGGGAGAATATAGAAAAGCAATGACGGAGGGAAA
AGTCCGCTTTCACATGGCGTGTGGAGAGTGGAGTTTGAGCCCTGGGGAGG
ATGTTTGGGGGGAGGGCAAGGAGGAGGTGGGGGAAGCGGATGAAAAGGAG
GGAAAAGAGTGGAGGAGGTCCTTGGTCGAGATGGCTCAGCAGGAATTACC
GAGTATGATGGAGGAGGTAGAGAAATTGTTGTGTGCGGAGGAAGTGGCGG
AGGCCTTACTGTACTATCAGCAGGTGTGGTGCTTCCTTCATTCGTACGAG
CGGAAGGAGGATGGGAGGGAGGAAGAGGATACAGAAATTACGACGGAGTT
CTTTCCTGTGCTCTCCAAGGTGCGACGAGGGGAGAAGCTGTTAGCGGTAG
AGGGAGTGGAGGAGGAGGAGGAGGAGGAGGAAGGGCAGGGGGTGATGGAG
ATTAATTGGGGTGCTGGTGCGCCTTCATCGGATGAGGTTGTGCCCGAGGG
AGAAGGGGGAGGGATTGATTGGAATGAAGGAGGCGGAGGAGGACCGGAGA
ACGGCAGCAGCTTCGAGCCTGTCGATAACGAAAGAGCAGTGAACTTCACA
TCGACCAGCAGCAGCAGCAGTACTGACGCGAGCCCCCCATCCGCGACCGT
GGCATCACCCAAAACGGGTCTGGAGGGGCAGCAGGGGGGATCCCTCCTTG
CGGACGCCAGTCTTCGGGCCGGGCTTGTGAACGATATGATGGAATTGGAG
TCCTTCTTACAGCAGCGGCGTCTGGAGGTTGGAGACACGAGCAATGTCGT
TTTTGTGGGGCAGTTTCAGGGGTCGCATGCCGCGTTGCAGCAGCAGTCCG
TAAGTATGGTAGACAGATATCTTAATGCGGTCAAGCGTGCCTTGGGTGTG
TTACGTGAGAAACGGCTGCAGCAATTGTGGCTAGTGTGTTCTTCGCCTGT
GTATGCCGACAGGGTAGTGCAGGGATTAATGCAGTATCGACGGCGTGTGC
GGAAGCTGGACAAGGCAAGACGGGAGACGGAGGGACGGAGGGAGGAAGCG
GCGGAGGCGTTGGCCAAGGCGTTGCCGGAATATGAGGCGATGGCGGCGGC
GACGACTGCCTTGAAGAAAAGGGTGGAAGAGTCGTTAAAGGAGTTGTTTA
AGGGTAGGGATATTTTGATCACCGGGGGCGTAAATGCACTGTGA
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Coding sequence (CDS) from alignment at chr15:764499..766392+

>NO15G02790.1 ID=NO15G02790.1|Name=NO15G02790.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr15:764499..766392+ (Nannochloropsis oceanica)
ATGGCGCCAGCAACCTCGTCATTGTCGTCGAATGACCCGAACAAAGTCCC
TATCTACGTGCCTTATCAAAAATTGACTGATTGGCTCGTGAACAGAAAGC
AGCTCCCGGCCAACTGGCATGAGTCGCTTAAGCTTGTGAAAGAGGATTTA
CGAGCAGCCCTACGTGGGTTGGAGGAGGGTGGGGGAGAAGTTGCGGTGTG
GGTCAAAGGGAAGGAGAGTAGCGCCGTCACGTACTACACTTGTCAGCAAA
TCATGTCTCTGCTGGAAAGGACACAGCAAGGCCGCACGAAGAATATCTTC
GGGTCATACACCGTGGCGGTGCTCAAGACGTGGGATAGCATTTTGCGCGC
GTATCGCAAGGACAACCTTTTTTTAGGGGAAGCTGCGCAGTTACTGGCGA
CACATACCACCTACACTTGTCCCGCAGTGCGTCGTCGAATTGCGGGGTAT
GATAAGCAGATCGAGGACTGCGATCGACGAATGGGAGAATATAGAAAAGC
AATGACGGAGGGAAAAGTCCGCTTTCACATGGCGTGTGGAGAGTGGAGTT
TGAGCCCTGGGGAGGATGTTTGGGGGGAGGGCAAGGAGGAGGTGGGGGAA
GCGGATGAAAAGGAGGGAAAAGAGTGGAGGAGGTCCTTGGTCGAGATGGC
TCAGCAGGAATTACCGAGTATGATGGAGGAGGTAGAGAAATTGTTGTGTG
CGGAGGAAGTGGCGGAGGCCTTACTGTACTATCAGCAGGTGTGGTGCTTC
CTTCATTCGTACGAGCGGAAGGAGGATGGGAGGGAGGAAGAGGATACAGA
AATTACGACGGAGTTCTTTCCTGTGCTCTCCAAGGTGCGACGAGGGGAGA
AGCTGTTAGCGGTAGAGGGAGTGGAGGAGGAGGAGGAGGAGGAGGAAGGG
CAGGGGGTGATGGAGATTAATTGGGGTGCTGGTGCGCCTTCATCGGATGA
GGTTGTGCCCGAGGGAGAAGGGGGAGGGATTGATTGGAATGAAGGAGGCG
GAGGAGGACCGGAGAACGGCAGCAGCTTCGAGCCTGTCGATAACGAAAGA
GCAGTGAACTTCACATCGACCAGCAGCAGCAGCAGTACTGACGCGAGCCC
CCCATCCGCGACCGTGGCATCACCCAAAACGGGTCTGGAGGGGCAGCAGG
GGGGATCCCTCCTTGCGGACGCCAGTCTTCGGGCCGGGCTTGTGAACGAT
ATGATGGAATTGGAGTCCTTCTTACAGCAGCGGCGTCTGGAGGTTGGAGA
CACGAGCAATGTCGTTTTTGTGGGGCAGTTTCAGGGGTCGCATGCCGCGT
TGCAGCAGCAGTCCGTAAGTATGGTAGACAGATATCTTAATGCGGTCAAG
CGTGCCTTGGGTGTGTTACGTGAGAAACGGCTGCAGCAATTGTGGCTAGT
GTGTTCTTCGCCTGTGTATGCCGACAGGGTAGTGCAGGGATTAATGCAGT
ATCGACGGCGTGTGCGGAAGCTGGACAAGGCAAGACGGGAGACGGAGGGA
CGGAGGGAGGAAGCGGCGGAGGCGTTGGCCAAGGCGTTGCCGGAATATGA
GGCGATGGCGGCGGCGACGACTGCCTTGAAGAAAAGGGTGGAAGAGTCGT
TAAAGGAGTTGTTTAAGGGTAGGGATATTTTGATCACCGGGGGCGTAAAT
GCACTGTGA
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Synonyms
Publications