NO15G02780.1, NO15G02780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02780.1
Unique NameNO15G02780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1758
Alignment locationchr15:761282..763881 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:761282..763881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02780.1 vs.
Match: EWM22351.1 (Acetohydroxy acid isomeroreductase, catalytic [Nannochloropsis gaditana])

HSP 1 Score: 999.2 bits (2582), Expect = 5.300e-288
Identity = 505/558 (90.50%), Postives = 524/558 (93.91%), Query Frame = 0 
Query:   26 MMKCCSLLMAVAMPLFAQGFMPAAPAG--SWLGTRGLTHRSASSIAATTS---RQSSRQTLRASAAAEFDTKIFKKTPISLGGTNEEIVKGGRDLFTLLPKAFEGIKQIGIIGWGSQAPAQGQNLKESLAGMGVNVKVGLRKSSPSWKLAESVGFTEKEGTLGEMFDVIKESDMVILLISDAAQVKLHKEIFAALKPGATLGLSHGFLLGYLESIGSDFPKDVNVIAVCPKGMGPSVRRLYEQGKTVNGAGINSSFAVHRDANGKATELALGWGIAIGSPFLFKTTMTEEYKSDIYGERGILLGAVHGIIETLFRRYVAQGMSPEQAFKESAESITGPITKIISKEGVLKLYNSLSGADKETFNKAYSASYKPAREILQEIYDEVASGNEIRSVVMHSERLSEFPVGKIDGTYTWQVGEKVRAARKEEEIPLNAFTAGVYVATMMAQIDVLRKAGHSFSEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILDQLAYTAIDAGAPVNQELIGDFLKNPVHDAISVCCSLRPPVDISCAAPST 579
            MMKCCSLL+AVAMP+FA GFMP AP    SWL TRGL HR  S+ AA  +   R  SR TLRAS A  FD+K+FKKTPISLGGT EEIVKGGRDLF LLP+AFEGIKQIGIIGWGSQAPAQGQNLKESLAG GV VKVGLRKSSPSW+LAESVGFTEK+GTLGEMFDVIKESDMVILLISDAAQVKLHKEIFAALKPGATLGLSHGFLLGYL+SIGSDFP+ +NVIAVCPKGMGPSVRRLYEQGKTVNGAGINSSFAVH+DANGKATELALGWG+AIGSPFLFKTTMTEEYKSDIYGERGILLGAVHGIIETLFRRYVA+GM+PEQAFKESAESITGPITKIISKEGVLKLYNSLS ADKE FNKAYSA+YKPAREILQEIYDEVASGNEIRSVVMHSERLSEFPVGKIDGTYTWQVGE VRAARKE+EIPLN FTAGVYVATMMAQIDVLRKAGHSFSEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILDQLAYTA+D   PVNQELIGDFLKNPVHDAISVCCSLRPPVDISCAAPST
Sbjct:    1 MMKCCSLLLAVAMPMFAAGFMPTAPVSGSSWLSTRGLPHRCVSASAAANAPSPRLFSRLTLRASGAGGFDSKVFKKTPISLGGTQEEIVKGGRDLFPLLPQAFEGIKQIGIIGWGSQAPAQGQNLKESLAGTGVKVKVGLRKSSPSWQLAESVGFTEKDGTLGEMFDVIKESDMVILLISDAAQVKLHKEIFAALKPGATLGLSHGFLLGYLQSIGSDFPEGINVIAVCPKGMGPSVRRLYEQGKTVNGAGINSSFAVHKDANGKATELALGWGVAIGSPFLFKTTMTEEYKSDIYGERGILLGAVHGIIETLFRRYVAEGMTPEQAFKESAESITGPITKIISKEGVLKLYNSLSAADKEVFNKAYSATYKPAREILQEIYDEVASGNEIRSVVMHSERLSEFPVGKIDGTYTWQVGETVRAARKEDEIPLNPFTAGVYVATMMAQIDVLRKAGHSFSEIVNESVIEAVDSLCPYMHYKGVAFMVDNCSITARLGSRKWAPRFDYILDQLAYTAVDNSVPVNQELIGDFLKNPVHDAISVCCSLRPPVDISCAAPST 558
The following BLAST results are available for this feature:
BLAST of NO15G02780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22351.15.300e-28890.50Acetohydroxy acid isomeroreductase, catalytic [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02780NO15G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02780.1NO15G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02780.1.cds1NO15G02780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02780.1.cds2NO15G02780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02780.1.cds3NO15G02780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02780.1 ID=NO15G02780.1|Name=NO15G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
ATGTGCAAGGTCAACGCCGCCATGGAACGCCCCCACTCTTTTTGGATGTG
TGAGTCGTCCTCGCTCGCGGCAAGGATGATGAAGTGCTGCAGCCTCCTCA
TGGCCGTGGCCATGCCCCTGTTTGCCCAAGGCTTTATGCCCGCTGCTCCA
GCTGGCTCTTGGCTGGGCACCCGCGGCCTGACCCACCGTTCCGCCTCCTC
TATCGCCGCCACCACCTCCCGGCAATCTTCCCGGCAGACCCTTCGCGCAT
CAGCCGCCGCGGAATTCGACACCAAGATTTTTAAGAAGACTCCCATCAGC
TTAGGGGGAACGAACGAGGAGATCGTGAAGGGTGGCCGTGATTTGTTTAC
CTTGTTACCCAAAGCCTTTGAGGGAATCAAGCAGATCGGCATTATCGGTT
GGGGGTCTCAGGCCCCCGCGCAGGGGCAAAATTTGAAGGAATCTCTGGCA
GGGATGGGTGTGAATGTGAAGGTGGGGTTGAGGAAGAGCTCACCGTCGTG
GAAGCTGGCGGAGAGCGTGGGGTTCACGGAGAAGGAGGGGACATTGGGCG
AGATGTTCGACGTCATCAAGGAGTCGGATATGGTCATCCTCCTCATTTCG
GACGCAGCGCAGGTAAAACTGCACAAAGAGATTTTTGCGGCGTTGAAGCC
GGGGGCGACGTTGGGGTTGTCCCACGGGTTCTTACTCGGGTACCTGGAGA
GCATCGGCTCCGATTTCCCCAAGGACGTGAATGTGATTGCAGTGTGCCCT
AAGGGAATGGGCCCCTCCGTGCGACGGCTGTACGAGCAGGGAAAGACGGT
GAACGGTGCTGGGATCAACAGCTCTTTTGCCGTTCACAGGGACGCGAACG
GCAAGGCGACGGAGCTGGCTTTGGGGTGGGGAATTGCCATCGGCAGCCCG
TTTTTGTTCAAGACGACTATGACGGAGGAGTACAAGAGTGATATCTACGG
GGAGCGCGGGATTCTCCTCGGGGCGGTGCATGGCATCATTGAAACCTTGT
TCAGGAGATATGTGGCGCAGGGCATGAGCCCGGAGCAGGCATTCAAGGAG
AGTGCCGAGAGCATCACGGGGCCTATTACCAAGATCATCTCCAAGGAGGG
AGTGTTGAAGCTGTACAACTCTCTGTCGGGCGCGGACAAGGAAACATTCA
ACAAGGCGTACTCGGCTTCGTACAAGCCGGCGCGCGAGATTCTGCAGGAG
ATTTATGACGAGGTGGCGAGTGGGAACGAGATTCGTTCAGTCGTGATGCA
CTCGGAGCGACTGTCGGAGTTTCCCGTGGGGAAGATCGATGGCACCTACA
CGTGGCAGGTGGGAGAGAAGGTGCGTGCGGCACGAAAGGAGGAGGAGATT
CCCCTGAATGCCTTCACGGCAGGCGTGTACGTGGCGACGATGATGGCACA
GATCGACGTCTTGCGAAAGGCCGGGCATTCCTTCTCGGAGATTGTCAACG
AGTCGGTCATTGAGGCGGTTGACTCTCTGTGCCCTTATATGCACTACAAG
GGCGTGGCCTTTATGGTGGACAACTGCTCCATCACCGCCCGCCTGGGCTC
CCGTAAGTGGGCCCCTCGTTTTGATTACATTTTGGACCAGCTTGCGTACA
CGGCCATTGATGCCGGCGCACCCGTCAACCAGGAGCTGATTGGCGACTTC
CTGAAGAACCCCGTGCACGATGCAATCTCCGTCTGCTGCTCCCTGCGCCC
GCCTGTGGATATTTCCTGCGCGGCCCCGTCGACGGTGAAGGAGATCGCGA
TGACTTAA
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protein sequence of NO15G02780.1

>NO15G02780.1-protein ID=NO15G02780.1-protein|Name=NO15G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MCKVNAAMERPHSFWMCESSSLAARMMKCCSLLMAVAMPLFAQGFMPAAP
AGSWLGTRGLTHRSASSIAATTSRQSSRQTLRASAAAEFDTKIFKKTPIS
LGGTNEEIVKGGRDLFTLLPKAFEGIKQIGIIGWGSQAPAQGQNLKESLA
GMGVNVKVGLRKSSPSWKLAESVGFTEKEGTLGEMFDVIKESDMVILLIS
DAAQVKLHKEIFAALKPGATLGLSHGFLLGYLESIGSDFPKDVNVIAVCP
KGMGPSVRRLYEQGKTVNGAGINSSFAVHRDANGKATELALGWGIAIGSP
FLFKTTMTEEYKSDIYGERGILLGAVHGIIETLFRRYVAQGMSPEQAFKE
SAESITGPITKIISKEGVLKLYNSLSGADKETFNKAYSASYKPAREILQE
IYDEVASGNEIRSVVMHSERLSEFPVGKIDGTYTWQVGEKVRAARKEEEI
PLNAFTAGVYVATMMAQIDVLRKAGHSFSEIVNESVIEAVDSLCPYMHYK
GVAFMVDNCSITARLGSRKWAPRFDYILDQLAYTAIDAGAPVNQELIGDF
LKNPVHDAISVCCSLRPPVDISCAAPSTVKEIAMT*
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mRNA from alignment at chr15:761282..763881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02780.1 ID=NO15G02780.1|Name=NO15G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2600bp|location=Sequence derived from alignment at chr15:761282..763881+ (Nannochloropsis oceanica)
ATGTGCAAGGTCAACGCCGCCATGGAACGCCCCCACTCTTTTTGGATGTG
TGGTGAGTAAAGCCGTGGTTTTTGGAGTCTGGTTGCTGTCGTTCGCGCAA
TTTAATGGTGAGGCAGAGAAGCATCGCCCTACGAGTGGACAGCAAGCAGG
AAGCAACTTCTCAACAACGTCAAAAGGATTTTGGGCTTTAGGCATGTTTT
GGCGCTCGTACAAGCAGGTGCAATGGCAGTGGTAGAACAGCTGTGCGTGA
TGGAGCTTGTTCAAGCTCTCCGGTTGATGGTCGGGAGTTCAAGCGGATGG
CCAAGAAGAAGTCCTTCTACAATACAGGGCACCAGGGATCAAAATGCAGC
GCATTGCATGCCTACACACCATAATTAATTCACTCGAGGCACCTCTTTCA
TGACCTACATCTTCGTTTCTTCACACTCATACACCACTCACTTACCATAG
AGTCGTCCTCGCTCGCGGCAAGGATGATGAAGTGCTGCAGCCTCCTCATG
GCCGTGGCCATGCCCCTGTTTGCCCAAGGCTTTATGCCCGCTGCTCCAGC
TGGTACGTTGCGGTAAAGATTGATTCCAGGGGAAGAGGGGGGAGAGGGGG
AAGAGGAAGAGATATATGTGTGTACATATATGTACATGCGTGAGCTGGTG
TGCGCATGTGGAGGGGGAACGGGAGAGCACGCCGGATGCCCCCTTGAATG
CGTTCCGTCAATGTTTGAGGACATGTTCATTCTAATGGTGTGTGACTTGG
TGCTTCCTGCCTGTGTGTGTGTGGTGTGCATAGGTACCTGCGAATTTGCG
TGCTCGGGGGAACGCGTCGTAAGTCTTATCGCGTTCTTCTAAATAGATAG
CTCCTACTCCTCACCCTCCCCGTCACTGGCATGCCATCCTTCTTTCCGCC
GTTACCCTTCCTTCACTCTTACCATTTTACCTTCTAACAATTGTCTAACT
TTCTTGTCCACCCTTCATTGTGGCCCCTCCCCGACCACCTTCACAGGCTC
TTGGCTGGGCACCCGCGGCCTGACCCACCGTTCCGCCTCCTCTATCGCCG
CCACCACCTCCCGGCAATCTTCCCGGCAGACCCTTCGCGCATCAGCCGCC
GCGGAATTCGACACCAAGATTTTTAAGAAGACTCCCATCAGCTTAGGGGG
AACGAACGAGGAGATCGTGAAGGGTGGCCGTGATTTGTTTACCTTGTTAC
CCAAAGCCTTTGAGGGAATCAAGCAGATCGGCATTATCGGTTGGGGGTCT
CAGGCCCCCGCGCAGGGGCAAAATTTGAAGGAATCTCTGGCAGGGATGGG
TGTGAATGTGAAGGTGGGGTTGAGGAAGAGCTCACCGTCGTGGAAGCTGG
CGGAGAGCGTGGGGTTCACGGAGAAGGAGGGGACATTGGGCGAGATGTTC
GACGTCATCAAGGAGTCGGATATGGTCATCCTCCTCATTTCGGACGCAGC
GCAGGTAAAACTGCACAAAGAGATTTTTGCGGCGTTGAAGCCGGGGGCGA
CGTTGGGGTTGTCCCACGGGTTCTTACTCGGGTACCTGGAGAGCATCGGC
TCCGATTTCCCCAAGGACGTGAATGTGATTGCAGTGTGCCCTAAGGGAAT
GGGCCCCTCCGTGCGACGGCTGTACGAGCAGGGAAAGACGGTGAACGGTG
CTGGGATCAACAGCTCTTTTGCCGTTCACAGGGACGCGAACGGCAAGGCG
ACGGAGCTGGCTTTGGGGTGGGGAATTGCCATCGGCAGCCCGTTTTTGTT
CAAGACGACTATGACGGAGGAGTACAAGAGTGATATCTACGGGGAGCGCG
GGATTCTCCTCGGGGCGGTGCATGGCATCATTGAAACCTTGTTCAGGAGA
TATGTGGCGCAGGGCATGAGCCCGGAGCAGGCATTCAAGGAGAGTGCCGA
GAGCATCACGGGGCCTATTACCAAGATCATCTCCAAGGAGGGAGTGTTGA
AGCTGTACAACTCTCTGTCGGGCGCGGACAAGGAAACATTCAACAAGGCG
TACTCGGCTTCGTACAAGCCGGCGCGCGAGATTCTGCAGGAGATTTATGA
CGAGGTGGCGAGTGGGAACGAGATTCGTTCAGTCGTGATGCACTCGGAGC
GACTGTCGGAGTTTCCCGTGGGGAAGATCGATGGCACCTACACGTGGCAG
GTGGGAGAGAAGGTGCGTGCGGCACGAAAGGAGGAGGAGATTCCCCTGAA
TGCCTTCACGGCAGGCGTGTACGTGGCGACGATGATGGCACAGATCGACG
TCTTGCGAAAGGCCGGGCATTCCTTCTCGGAGATTGTCAACGAGTCGGTC
ATTGAGGCGGTTGACTCTCTGTGCCCTTATATGCACTACAAGGGCGTGGC
CTTTATGGTGGACAACTGCTCCATCACCGCCCGCCTGGGCTCCCGTAAGT
GGGCCCCTCGTTTTGATTACATTTTGGACCAGCTTGCGTACACGGCCATT
GATGCCGGCGCACCCGTCAACCAGGAGCTGATTGGCGACTTCCTGAAGAA
CCCCGTGCACGATGCAATCTCCGTCTGCTGCTCCCTGCGCCCGCCTGTGG
ATATTTCCTGCGCGGCCCCGTCGACGGTGAAGGAGATCGCGATGACTTAA
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Coding sequence (CDS) from alignment at chr15:761282..763881+

>NO15G02780.1 ID=NO15G02780.1|Name=NO15G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at chr15:761282..763881+ (Nannochloropsis oceanica)
ATGTGCAAGGTCAACGCCGCCATGGAACGCCCCCACTCTTTTTGGATGTG
TGAGTCGTCCTCGCTCGCGGCAAGGATGATGAAGTGCTGCAGCCTCCTCA
TGGCCGTGGCCATGCCCCTGTTTGCCCAAGGCTTTATGCCCGCTGCTCCA
GCTGGCTCTTGGCTGGGCACCCGCGGCCTGACCCACCGTTCCGCCTCCTC
TATCGCCGCCACCACCTCCCGGCAATCTTCCCGGCAGACCCTTCGCGCAT
CAGCCGCCGCGGAATTCGACACCAAGATTTTTAAGAAGACTCCCATCAGC
TTAGGGGGAACGAACGAGGAGATCGTGAAGGGTGGCCGTGATTTGTTTAC
CTTGTTACCCAAAGCCTTTGAGGGAATCAAGCAGATCGGCATTATCGGTT
GGGGGTCTCAGGCCCCCGCGCAGGGGCAAAATTTGAAGGAATCTCTGGCA
GGGATGGGTGTGAATGTGAAGGTGGGGTTGAGGAAGAGCTCACCGTCGTG
GAAGCTGGCGGAGAGCGTGGGGTTCACGGAGAAGGAGGGGACATTGGGCG
AGATGTTCGACGTCATCAAGGAGTCGGATATGGTCATCCTCCTCATTTCG
GACGCAGCGCAGGTAAAACTGCACAAAGAGATTTTTGCGGCGTTGAAGCC
GGGGGCGACGTTGGGGTTGTCCCACGGGTTCTTACTCGGGTACCTGGAGA
GCATCGGCTCCGATTTCCCCAAGGACGTGAATGTGATTGCAGTGTGCCCT
AAGGGAATGGGCCCCTCCGTGCGACGGCTGTACGAGCAGGGAAAGACGGT
GAACGGTGCTGGGATCAACAGCTCTTTTGCCGTTCACAGGGACGCGAACG
GCAAGGCGACGGAGCTGGCTTTGGGGTGGGGAATTGCCATCGGCAGCCCG
TTTTTGTTCAAGACGACTATGACGGAGGAGTACAAGAGTGATATCTACGG
GGAGCGCGGGATTCTCCTCGGGGCGGTGCATGGCATCATTGAAACCTTGT
TCAGGAGATATGTGGCGCAGGGCATGAGCCCGGAGCAGGCATTCAAGGAG
AGTGCCGAGAGCATCACGGGGCCTATTACCAAGATCATCTCCAAGGAGGG
AGTGTTGAAGCTGTACAACTCTCTGTCGGGCGCGGACAAGGAAACATTCA
ACAAGGCGTACTCGGCTTCGTACAAGCCGGCGCGCGAGATTCTGCAGGAG
ATTTATGACGAGGTGGCGAGTGGGAACGAGATTCGTTCAGTCGTGATGCA
CTCGGAGCGACTGTCGGAGTTTCCCGTGGGGAAGATCGATGGCACCTACA
CGTGGCAGGTGGGAGAGAAGGTGCGTGCGGCACGAAAGGAGGAGGAGATT
CCCCTGAATGCCTTCACGGCAGGCGTGTACGTGGCGACGATGATGGCACA
GATCGACGTCTTGCGAAAGGCCGGGCATTCCTTCTCGGAGATTGTCAACG
AGTCGGTCATTGAGGCGGTTGACTCTCTGTGCCCTTATATGCACTACAAG
GGCGTGGCCTTTATGGTGGACAACTGCTCCATCACCGCCCGCCTGGGCTC
CCGTAAGTGGGCCCCTCGTTTTGATTACATTTTGGACCAGCTTGCGTACA
CGGCCATTGATGCCGGCGCACCCGTCAACCAGGAGCTGATTGGCGACTTC
CTGAAGAACCCCGTGCACGATGCAATCTCCGTCTGCTGCTCCCTGCGCCC
GCCTGTGGATATTTCCTGCGCGGCCCCGTCGACGGTGAAGGAGATCGCGA
TGACTTAA
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Synonyms
Publications