NO15G02680.1, NO15G02680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02680.1
Unique NameNO15G02680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2370
Alignment locationchr15:731401..733770 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:731401..733770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02680.1 vs.
Match: EWM22340.1 (cryptic tubulin [Nannochloropsis gaditana])

HSP 1 Score: 539.3 bits (1388), Expect = 1.500e-149
Identity = 311/587 (52.98%), Postives = 390/587 (66.44%), Query Frame = 0 
Query:    1 MASTTLHVHVGQCGNQVGERFWSLAATDASSGASAVDSDEAAAIPSGSRPHPMFHEVDSKAVAVFVDSEAKVVDRLRQNPCLSGVIRKDACITDSSGRANNWAMGFTASCQELRKGHGLFYKTVNTLRRELERVDRLQSVVIHHSLAGGTGSGVGSALLQYLREACPALTITTSSVGPFSSGDCATQWYNTAFSLSALTEYADAVLYRDNDISLSHHLMTSAAASHGKGNGSR-MPAGWGHAAAIATASMGTINDSLATDLACVFFPTITSSSLSSSSFMGCYQPWDARQLSRSCCPFTYAKFVDVRSSWSMS--SSLPSPSSSCRAAAKSGQHQLVARGGEEEGSRGWGEDWSSLGRKLVATLPRKDLKGRPNVTIAAQTIVRGMSPEAVPSPAAVSTWEEASTLPSLKRGGGGRGGKGGPGKGSRNRSRGLWAAAVTWEGRKVNPYVPGAVAPPFDSALATLLHQDLPRALLLAPWRQQHQSQPVETTYSLDCPPT--------SSFPHSSGSRGLAVCANRTYMGSTIGKVLKRAEEMSAHGAYLHWYSRHGIEEADFAVAFEQLRRMKEEYEEWGRGAEQGRR 577
            M S TLHVH+GQCGNQ+GE+FWSLAA D    A+A D+ +A++  S   PHP+FHE D +A AVFVDSEAKVVDRLR+N  L+ V+RK+ACITDSSGRANNWAMGFT+SC+EL +  GLFY TVN LRRELER+D LQS+VI+HSLAGGTGSGVGSAL QYLREACP++ ITT SVGPFS+GDCATQWYN+ F+L+AL+E+AD VLYRDND  L  +L  + AA   +G G R M  G G A A + ASMG +N+SLA DLAC+ FPT+TS S+ +    G Y+ WDA  L   C PF YAKFVD RSSWS S  ++LP+ S S +AAA  G H L        G   W ++   LG+ ++A+ P +D +G+ NVT+AAQ  VRG+    +P        +E  +L    RG GG    G     +RN  +           +  NPY+P     P+   L   LH DLPRAL L  WR   Q  P+ T +S    P+        ++ P SS S G+A+CANRT+M ST+ KVL RAEEM+ H AYLHW+ RHGIE+ DF  AFE LRR+KEEY+E G G+++  R
Sbjct:    1 MVSATLHVHIGQCGNQIGEQFWSLAADDF---AAAADNGDASSF-SPQYPHPLFHEQDGRAAAVFVDSEAKVVDRLRKNSRLASVLRKEACITDSSGRANNWAMGFTSSCKELAQSRGLFYSTVNVLRRELERIDSLQSLVIYHSLAGGTGSGVGSALFQYLREACPSVNITTCSVGPFSTGDCATQWYNSTFTLNALSEHADTVLYRDNDQLLGEYLRVAGAA---EGTGRRGMSGGRGLALATSKASMGRLNESLAADLACLLFPTVTSPSIPTCGGGG-YRAWDALALQHDCTPFKYAKFVDNRSSWSTSTATTLPTSSVSFKAAAGHGLHHLPDGRLGGAGGGQWADECVYLGKDVIASFPTEDGRGKANVTLAAQMTVRGVD---LPGTGPHVPGQEQVSLSEHPRGKGGPQKSGQCRDSNRNHQK----------PQTSNPYLP---PTPWHPGLTAFLHHDLPRALRLPSWR---QGSPIGTVFSSHSQPSILPCTSMPAARPFSSSSPGVAICANRTHMSSTVEKVLGRAEEMAEHRAYLHWFHRHGIEDDDFTAAFEGLRRVKEEYDELGSGSDRALR 560
The following BLAST results are available for this feature:
BLAST of NO15G02680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22340.11.500e-14952.98cryptic tubulin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02680NO15G02680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02680.1NO15G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02680.1.cds1NO15G02680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02680.1 ID=NO15G02680.1|Name=NO15G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp
GGGAGGTTTGCCACGTACTCGCCAAATGCGACGTTCCCCAATTCTTCCAT
ATTTTCGCAATCCCTGCACCTCTGCACTCAATTCCCACCACCACATACCG
TACCAGACACAGCTCCATTATGGCCTCTACAACGCTGCACGTCCATGTGG
GCCAGTGCGGCAATCAAGTTGGAGAACGATTCTGGTCCTTGGCGGCTACA
GACGCCTCTTCTGGTGCTTCTGCCGTCGACAGCGACGAAGCTGCAGCTAT
CCCGTCGGGCTCCCGCCCGCACCCCATGTTTCACGAGGTAGACAGCAAAG
CGGTTGCTGTCTTTGTGGACAGCGAGGCTAAGGTTGTGGATCGCTTGCGC
CAGAATCCATGTCTGTCGGGAGTCATTCGAAAAGACGCGTGCATTACCGA
CAGCTCGGGGCGGGCCAACAATTGGGCCATGGGTTTTACCGCCTCATGCC
AAGAGCTACGGAAAGGCCATGGACTCTTTTATAAAACCGTAAATACTCTT
CGAAGGGAGCTGGAGCGGGTAGATCGCTTGCAGAGCGTGGTCATACATCA
TAGCTTGGCGGGAGGGACGGGATCGGGAGTAGGGTCGGCGCTGCTGCAGT
ATTTGCGGGAGGCTTGCCCGGCATTGACTATCACCACCTCCTCCGTGGGG
CCTTTTTCGTCGGGGGACTGTGCGACGCAGTGGTATAATACGGCGTTCTC
CTTGAGTGCATTAACAGAGTATGCAGATGCGGTGCTTTATCGAGACAATG
ACATATCGCTGAGCCATCACCTGATGACCTCTGCAGCGGCTTCTCATGGA
AAGGGCAACGGCAGCAGGATGCCCGCCGGGTGGGGCCACGCAGCCGCTAT
AGCAACGGCGTCGATGGGCACAATAAATGATAGCTTGGCCACGGATCTCG
CTTGTGTCTTCTTTCCTACCATTACTTCTTCCTCTCTCTCCTCCTCGTCT
TTTATGGGCTGCTACCAGCCATGGGACGCCCGGCAACTGAGTCGCAGCTG
CTGTCCCTTCACCTATGCTAAGTTTGTGGACGTTCGTTCGTCTTGGTCCA
TGTCGTCCTCCTTACCTTCGCCGTCATCATCTTGCAGAGCAGCAGCGAAA
TCGGGTCAACATCAATTGGTGGCAAGAGGAGGAGAAGAGGAAGGAAGCCG
GGGATGGGGGGAGGACTGGTCAAGCCTAGGGCGGAAGCTGGTGGCCACAT
TACCTCGTAAGGATTTAAAGGGGAGACCGAATGTGACGATTGCTGCTCAA
ACCATAGTGCGGGGAATGAGTCCTGAGGCGGTGCCCTCGCCTGCAGCTGT
GTCGACATGGGAAGAAGCCTCGACCTTGCCGTCTCTGAAACGAGGAGGAG
GAGGACGGGGAGGGAAAGGGGGACCGGGAAAAGGAAGCAGAAACAGGAGC
CGGGGGTTATGGGCCGCAGCTGTGACATGGGAGGGAAGGAAGGTAAATCC
ATATGTACCTGGAGCAGTTGCTCCTCCTTTTGATTCAGCTCTGGCGACGC
TCCTCCATCAAGACCTCCCCCGCGCCCTCCTCCTCGCCCCCTGGCGTCAG
CAACACCAATCCCAGCCAGTGGAAACCACCTACTCCCTCGATTGCCCTCC
TACTTCCTCCTTCCCCCACTCCTCTGGCTCAAGAGGCTTGGCCGTCTGTG
CCAATCGCACCTACATGGGTAGCACTATTGGCAAAGTATTAAAAAGAGCA
GAGGAGATGTCGGCGCATGGTGCCTACCTTCACTGGTACAGCCGCCATGG
AATTGAAGAAGCAGATTTTGCCGTTGCCTTTGAACAGCTCCGGAGAATGA
AGGAAGAGTACGAGGAATGGGGGAGGGGCGCAGAGCAGGGTAGGAGGCAG
GGAGCGATTATAGGTTGATTTGTCGAGAAGGAAATGGGAAAAAGTTACAC
GGAAGCAAAATCTTCAACGATATGTGCTACTACTGCTATTCTCGTATTTG
TGTACTCTGCTCTCTAGTACTTCGTCCCTCACAAGTATTTCGGTAAATAG
ACATTCTGGTTCACGTGCGCACGTTAGCAAGGCAGGATGGACGGGCAGGC
AGAAGAAGATGTAATCGAAGGTAGCACCATGTGATGGAAATCGTTTGCTG
TTGCGTCAAGAAATAGCAGCGTGATGGGGGAGATGTGCCTTGAGATTGGA
ACATGAACACATACATGCTCAAGCAACGTGTCAATTTTCAAGGAGGTTGG
ACAAACATGTTGCTTGTGACGGTGGGAAAATAACAAGCAGAAGAAGCAGT
CTACTATGCGCCCGCGCGTGCTCAGGATACAGCCACCTGGTGCTTTTGTT
GTGTCCCATGCGTTTTCATGCGTCTGTGGGAGAATGAAGCAGTGGATTGA
AGAAGGGTGATGGTGTTTTC
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protein sequence of NO15G02680.1

>NO15G02680.1-protein ID=NO15G02680.1-protein|Name=NO15G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MASTTLHVHVGQCGNQVGERFWSLAATDASSGASAVDSDEAAAIPSGSRP
HPMFHEVDSKAVAVFVDSEAKVVDRLRQNPCLSGVIRKDACITDSSGRAN
NWAMGFTASCQELRKGHGLFYKTVNTLRRELERVDRLQSVVIHHSLAGGT
GSGVGSALLQYLREACPALTITTSSVGPFSSGDCATQWYNTAFSLSALTE
YADAVLYRDNDISLSHHLMTSAAASHGKGNGSRMPAGWGHAAAIATASMG
TINDSLATDLACVFFPTITSSSLSSSSFMGCYQPWDARQLSRSCCPFTYA
KFVDVRSSWSMSSSLPSPSSSCRAAAKSGQHQLVARGGEEEGSRGWGEDW
SSLGRKLVATLPRKDLKGRPNVTIAAQTIVRGMSPEAVPSPAAVSTWEEA
STLPSLKRGGGGRGGKGGPGKGSRNRSRGLWAAAVTWEGRKVNPYVPGAV
APPFDSALATLLHQDLPRALLLAPWRQQHQSQPVETTYSLDCPPTSSFPH
SSGSRGLAVCANRTYMGSTIGKVLKRAEEMSAHGAYLHWYSRHGIEEADF
AVAFEQLRRMKEEYEEWGRGAEQGRRQGAIIG*
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mRNA from alignment at chr15:731401..733770+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02680.1 ID=NO15G02680.1|Name=NO15G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp|location=Sequence derived from alignment at chr15:731401..733770+ (Nannochloropsis oceanica)
GGGAGGTTTGCCACGTACTCGCCAAATGCGACGTTCCCCAATTCTTCCAT
ATTTTCGCAATCCCTGCACCTCTGCACTCAATTCCCACCACCACATACCG
TACCAGACACAGCTCCATTATGGCCTCTACAACGCTGCACGTCCATGTGG
GCCAGTGCGGCAATCAAGTTGGAGAACGATTCTGGTCCTTGGCGGCTACA
GACGCCTCTTCTGGTGCTTCTGCCGTCGACAGCGACGAAGCTGCAGCTAT
CCCGTCGGGCTCCCGCCCGCACCCCATGTTTCACGAGGTAGACAGCAAAG
CGGTTGCTGTCTTTGTGGACAGCGAGGCTAAGGTTGTGGATCGCTTGCGC
CAGAATCCATGTCTGTCGGGAGTCATTCGAAAAGACGCGTGCATTACCGA
CAGCTCGGGGCGGGCCAACAATTGGGCCATGGGTTTTACCGCCTCATGCC
AAGAGCTACGGAAAGGCCATGGACTCTTTTATAAAACCGTAAATACTCTT
CGAAGGGAGCTGGAGCGGGTAGATCGCTTGCAGAGCGTGGTCATACATCA
TAGCTTGGCGGGAGGGACGGGATCGGGAGTAGGGTCGGCGCTGCTGCAGT
ATTTGCGGGAGGCTTGCCCGGCATTGACTATCACCACCTCCTCCGTGGGG
CCTTTTTCGTCGGGGGACTGTGCGACGCAGTGGTATAATACGGCGTTCTC
CTTGAGTGCATTAACAGAGTATGCAGATGCGGTGCTTTATCGAGACAATG
ACATATCGCTGAGCCATCACCTGATGACCTCTGCAGCGGCTTCTCATGGA
AAGGGCAACGGCAGCAGGATGCCCGCCGGGTGGGGCCACGCAGCCGCTAT
AGCAACGGCGTCGATGGGCACAATAAATGATAGCTTGGCCACGGATCTCG
CTTGTGTCTTCTTTCCTACCATTACTTCTTCCTCTCTCTCCTCCTCGTCT
TTTATGGGCTGCTACCAGCCATGGGACGCCCGGCAACTGAGTCGCAGCTG
CTGTCCCTTCACCTATGCTAAGTTTGTGGACGTTCGTTCGTCTTGGTCCA
TGTCGTCCTCCTTACCTTCGCCGTCATCATCTTGCAGAGCAGCAGCGAAA
TCGGGTCAACATCAATTGGTGGCAAGAGGAGGAGAAGAGGAAGGAAGCCG
GGGATGGGGGGAGGACTGGTCAAGCCTAGGGCGGAAGCTGGTGGCCACAT
TACCTCGTAAGGATTTAAAGGGGAGACCGAATGTGACGATTGCTGCTCAA
ACCATAGTGCGGGGAATGAGTCCTGAGGCGGTGCCCTCGCCTGCAGCTGT
GTCGACATGGGAAGAAGCCTCGACCTTGCCGTCTCTGAAACGAGGAGGAG
GAGGACGGGGAGGGAAAGGGGGACCGGGAAAAGGAAGCAGAAACAGGAGC
CGGGGGTTATGGGCCGCAGCTGTGACATGGGAGGGAAGGAAGGTAAATCC
ATATGTACCTGGAGCAGTTGCTCCTCCTTTTGATTCAGCTCTGGCGACGC
TCCTCCATCAAGACCTCCCCCGCGCCCTCCTCCTCGCCCCCTGGCGTCAG
CAACACCAATCCCAGCCAGTGGAAACCACCTACTCCCTCGATTGCCCTCC
TACTTCCTCCTTCCCCCACTCCTCTGGCTCAAGAGGCTTGGCCGTCTGTG
CCAATCGCACCTACATGGGTAGCACTATTGGCAAAGTATTAAAAAGAGCA
GAGGAGATGTCGGCGCATGGTGCCTACCTTCACTGGTACAGCCGCCATGG
AATTGAAGAAGCAGATTTTGCCGTTGCCTTTGAACAGCTCCGGAGAATGA
AGGAAGAGTACGAGGAATGGGGGAGGGGCGCAGAGCAGGGTAGGAGGCAG
GGAGCGATTATAGGTTGATTTGTCGAGAAGGAAATGGGAAAAAGTTACAC
GGAAGCAAAATCTTCAACGATATGTGCTACTACTGCTATTCTCGTATTTG
TGTACTCTGCTCTCTAGTACTTCGTCCCTCACAAGTATTTCGGTAAATAG
ACATTCTGGTTCACGTGCGCACGTTAGCAAGGCAGGATGGACGGGCAGGC
AGAAGAAGATGTAATCGAAGGTAGCACCATGTGATGGAAATCGTTTGCTG
TTGCGTCAAGAAATAGCAGCGTGATGGGGGAGATGTGCCTTGAGATTGGA
ACATGAACACATACATGCTCAAGCAACGTGTCAATTTTCAAGGAGGTTGG
ACAAACATGTTGCTTGTGACGGTGGGAAAATAACAAGCAGAAGAAGCAGT
CTACTATGCGCCCGCGCGTGCTCAGGATACAGCCACCTGGTGCTTTTGTT
GTGTCCCATGCGTTTTCATGCGTCTGTGGGAGAATGAAGCAGTGGATTGA
AGAAGGGTGATGGTGTTTTC
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Coding sequence (CDS) from alignment at chr15:731401..733770+

>NO15G02680.1 ID=NO15G02680.1|Name=NO15G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr15:731401..733770+ (Nannochloropsis oceanica)
ATGGCCTCTACAACGCTGCACGTCCATGTGGGCCAGTGCGGCAATCAAGT
TGGAGAACGATTCTGGTCCTTGGCGGCTACAGACGCCTCTTCTGGTGCTT
CTGCCGTCGACAGCGACGAAGCTGCAGCTATCCCGTCGGGCTCCCGCCCG
CACCCCATGTTTCACGAGGTAGACAGCAAAGCGGTTGCTGTCTTTGTGGA
CAGCGAGGCTAAGGTTGTGGATCGCTTGCGCCAGAATCCATGTCTGTCGG
GAGTCATTCGAAAAGACGCGTGCATTACCGACAGCTCGGGGCGGGCCAAC
AATTGGGCCATGGGTTTTACCGCCTCATGCCAAGAGCTACGGAAAGGCCA
TGGACTCTTTTATAAAACCGTAAATACTCTTCGAAGGGAGCTGGAGCGGG
TAGATCGCTTGCAGAGCGTGGTCATACATCATAGCTTGGCGGGAGGGACG
GGATCGGGAGTAGGGTCGGCGCTGCTGCAGTATTTGCGGGAGGCTTGCCC
GGCATTGACTATCACCACCTCCTCCGTGGGGCCTTTTTCGTCGGGGGACT
GTGCGACGCAGTGGTATAATACGGCGTTCTCCTTGAGTGCATTAACAGAG
TATGCAGATGCGGTGCTTTATCGAGACAATGACATATCGCTGAGCCATCA
CCTGATGACCTCTGCAGCGGCTTCTCATGGAAAGGGCAACGGCAGCAGGA
TGCCCGCCGGGTGGGGCCACGCAGCCGCTATAGCAACGGCGTCGATGGGC
ACAATAAATGATAGCTTGGCCACGGATCTCGCTTGTGTCTTCTTTCCTAC
CATTACTTCTTCCTCTCTCTCCTCCTCGTCTTTTATGGGCTGCTACCAGC
CATGGGACGCCCGGCAACTGAGTCGCAGCTGCTGTCCCTTCACCTATGCT
AAGTTTGTGGACGTTCGTTCGTCTTGGTCCATGTCGTCCTCCTTACCTTC
GCCGTCATCATCTTGCAGAGCAGCAGCGAAATCGGGTCAACATCAATTGG
TGGCAAGAGGAGGAGAAGAGGAAGGAAGCCGGGGATGGGGGGAGGACTGG
TCAAGCCTAGGGCGGAAGCTGGTGGCCACATTACCTCGTAAGGATTTAAA
GGGGAGACCGAATGTGACGATTGCTGCTCAAACCATAGTGCGGGGAATGA
GTCCTGAGGCGGTGCCCTCGCCTGCAGCTGTGTCGACATGGGAAGAAGCC
TCGACCTTGCCGTCTCTGAAACGAGGAGGAGGAGGACGGGGAGGGAAAGG
GGGACCGGGAAAAGGAAGCAGAAACAGGAGCCGGGGGTTATGGGCCGCAG
CTGTGACATGGGAGGGAAGGAAGGTAAATCCATATGTACCTGGAGCAGTT
GCTCCTCCTTTTGATTCAGCTCTGGCGACGCTCCTCCATCAAGACCTCCC
CCGCGCCCTCCTCCTCGCCCCCTGGCGTCAGCAACACCAATCCCAGCCAG
TGGAAACCACCTACTCCCTCGATTGCCCTCCTACTTCCTCCTTCCCCCAC
TCCTCTGGCTCAAGAGGCTTGGCCGTCTGTGCCAATCGCACCTACATGGG
TAGCACTATTGGCAAAGTATTAAAAAGAGCAGAGGAGATGTCGGCGCATG
GTGCCTACCTTCACTGGTACAGCCGCCATGGAATTGAAGAAGCAGATTTT
GCCGTTGCCTTTGAACAGCTCCGGAGAATGAAGGAAGAGTACGAGGAATG
GGGGAGGGGCGCAGAGCAGGGTAGGAGGCAGGGAGCGATTATAGGTTGA
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Synonyms
Publications