NO15G02660.1, NO15G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02660.1
Unique NameNO15G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr15:722230..723168 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:722230..723168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02660.1 vs.
Match: XP_005855022.1 (inositol oxygenase [Nannochloropsis gaditana CCMP526]; EKU21334.1 inositol oxygenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 478.4 bits (1230), Expect = 1.700e-131
Identity = 222/302 (73.51%), Postives = 248/302 (82.12%), Query Frame = 0 
Query:   11 ATAPFLRTTAVPAADTIMHIKTAHDKDVIEFRNYSDSALQARVKRHYRGMRQNQTVAFYEKMEEKYSFAPGKHRAEMTVREAFQALEAYVDSSDPDMDLPNLIHMLQTAEGIRKAGHPDWMQLIGLLHDMGKIQFLWGKREDGQEGTGEGAQWALGGDTWVLGCAIPSTVVFPEFNGLNPDEQDERYNGRNGMYEEGCGIEQLKWAWGHDEYMYRMLVANGATLPKEGLAMVRYHSAYPWHDKGEYGQFMKPGDEMLMAAVKKFNVFDLYTKDEGKGVDVDKVWPYYQGLIEKYLGTGPLRW 313
            A  P    T  PAAD I  IKTA  K+V EFRNY+DSALQ RV  HYRGMRQNQTV F+++MEEKYSFAP KHRA M+++EAFQALE YVDSSDPD+DLPNL HMLQTAEGIRKAGHPDWMQL+GLLHDMGKIQFLWG   +GQ+GT  G QWALGGDTWV+GCAIPS+VVFPEFN LNPD QD RY   +G+YE GCGIE L+WAWGHDEYMYRMLVAN  TLPK  LAMVR+HSAYPWH+KGEY +FM PGDE+L+  V+ FN FDLYTKDE   VDV+ +WPYYQ LI+KYL  G LRW
Sbjct:    9 AAEPCTGVTVAPAADEITSIKTATGKNVSEFRNYTDSALQMRVAAHYRGMRQNQTVDFHKRMEEKYSFAPEKHRAVMSIQEAFQALEKYVDSSDPDIDLPNLTHMLQTAEGIRKAGHPDWMQLVGLLHDMGKIQFLWGDASNGQKGTAHGPQWALGGDTWVVGCAIPSSVVFPEFNALNPDMQDARYKSADGIYEAGCGIENLRWAWGHDEYMYRMLVANKTTLPKAALAMVRFHSAYPWHEKGEYARFMGPGDEVLLHWVRLFNRFDLYTKDEESAVDVEALWPYYQKLIDKYLPPGRLRW 310
The following BLAST results are available for this feature:
BLAST of NO15G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855022.11.700e-13173.51inositol oxygenase [Nannochloropsis gaditana CCMP5... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02660NO15G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02660.1NO15G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02660.1.cds1NO15G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02660.1 ID=NO15G02660.1|Name=NO15G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
ATGACTAAGGGTGCCACCCTCGAAGCCAGGGCCACCGCACCCTTCCTTCG
TACCACCGCAGTGCCCGCGGCCGACACCATCATGCATATTAAGACAGCAC
ATGACAAGGATGTGATTGAATTTCGCAATTACAGCGATTCGGCGCTCCAA
GCCCGCGTCAAGCGCCATTATCGTGGAATGCGCCAAAATCAGACCGTGGC
GTTCTACGAGAAAATGGAGGAGAAGTATTCATTTGCCCCGGGAAAACATC
GCGCTGAAATGACAGTTCGCGAGGCCTTTCAAGCATTGGAGGCGTACGTT
GATTCCTCTGATCCTGACATGGACTTGCCCAACCTCATTCACATGCTCCA
GACTGCGGAGGGTATCCGCAAGGCTGGCCATCCCGACTGGATGCAGCTCA
TCGGCCTCTTACATGACATGGGCAAGATTCAATTTTTGTGGGGAAAGAGG
GAGGATGGGCAGGAGGGTACGGGGGAGGGAGCACAGTGGGCCTTGGGAGG
GGACACGTGGGTGTTGGGGTGCGCGATCCCCTCAACGGTGGTATTCCCAG
AATTTAACGGCTTGAATCCTGATGAGCAAGATGAGCGATATAATGGTAGA
AATGGGATGTACGAGGAAGGGTGTGGTATAGAGCAATTGAAGTGGGCGTG
GGGACATGACGAATACATGTACCGCATGCTGGTCGCGAATGGAGCGACGT
TGCCCAAGGAGGGCTTAGCGATGGTGAGGTACCATTCCGCCTACCCCTGG
CACGATAAGGGGGAATATGGCCAGTTTATGAAGCCTGGAGACGAGATGTT
GATGGCTGCGGTGAAAAAATTTAACGTATTTGATTTGTATACGAAAGACG
AGGGGAAGGGGGTGGATGTCGACAAAGTGTGGCCGTATTATCAGGGGTTG
ATTGAGAAGTATCTGGGAACAGGCCCGTTGCGGTGGTGA
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protein sequence of NO15G02660.1

>NO15G02660.1-protein ID=NO15G02660.1-protein|Name=NO15G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MTKGATLEARATAPFLRTTAVPAADTIMHIKTAHDKDVIEFRNYSDSALQ
ARVKRHYRGMRQNQTVAFYEKMEEKYSFAPGKHRAEMTVREAFQALEAYV
DSSDPDMDLPNLIHMLQTAEGIRKAGHPDWMQLIGLLHDMGKIQFLWGKR
EDGQEGTGEGAQWALGGDTWVLGCAIPSTVVFPEFNGLNPDEQDERYNGR
NGMYEEGCGIEQLKWAWGHDEYMYRMLVANGATLPKEGLAMVRYHSAYPW
HDKGEYGQFMKPGDEMLMAAVKKFNVFDLYTKDEGKGVDVDKVWPYYQGL
IEKYLGTGPLRW*
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mRNA from alignment at chr15:722230..723168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02660.1 ID=NO15G02660.1|Name=NO15G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp|location=Sequence derived from alignment at chr15:722230..723168- (Nannochloropsis oceanica)
ATGACTAAGGGTGCCACCCTCGAAGCCAGGGCCACCGCACCCTTCCTTCG
TACCACCGCAGTGCCCGCGGCCGACACCATCATGCATATTAAGACAGCAC
ATGACAAGGATGTGATTGAATTTCGCAATTACAGCGATTCGGCGCTCCAA
GCCCGCGTCAAGCGCCATTATCGTGGAATGCGCCAAAATCAGACCGTGGC
GTTCTACGAGAAAATGGAGGAGAAGTATTCATTTGCCCCGGGAAAACATC
GCGCTGAAATGACAGTTCGCGAGGCCTTTCAAGCATTGGAGGCGTACGTT
GATTCCTCTGATCCTGACATGGACTTGCCCAACCTCATTCACATGCTCCA
GACTGCGGAGGGTATCCGCAAGGCTGGCCATCCCGACTGGATGCAGCTCA
TCGGCCTCTTACATGACATGGGCAAGATTCAATTTTTGTGGGGAAAGAGG
GAGGATGGGCAGGAGGGTACGGGGGAGGGAGCACAGTGGGCCTTGGGAGG
GGACACGTGGGTGTTGGGGTGCGCGATCCCCTCAACGGTGGTATTCCCAG
AATTTAACGGCTTGAATCCTGATGAGCAAGATGAGCGATATAATGGTAGA
AATGGGATGTACGAGGAAGGGTGTGGTATAGAGCAATTGAAGTGGGCGTG
GGGACATGACGAATACATGTACCGCATGCTGGTCGCGAATGGAGCGACGT
TGCCCAAGGAGGGCTTAGCGATGGTGAGGTACCATTCCGCCTACCCCTGG
CACGATAAGGGGGAATATGGCCAGTTTATGAAGCCTGGAGACGAGATGTT
GATGGCTGCGGTGAAAAAATTTAACGTATTTGATTTGTATACGAAAGACG
AGGGGAAGGGGGTGGATGTCGACAAAGTGTGGCCGTATTATCAGGGGTTG
ATTGAGAAGTATCTGGGAACAGGCCCGTTGCGGTGGTGA
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Coding sequence (CDS) from alignment at chr15:722230..723168-

>NO15G02660.1 ID=NO15G02660.1|Name=NO15G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr15:722230..723168- (Nannochloropsis oceanica)
ATGACTAAGGGTGCCACCCTCGAAGCCAGGGCCACCGCACCCTTCCTTCG
TACCACCGCAGTGCCCGCGGCCGACACCATCATGCATATTAAGACAGCAC
ATGACAAGGATGTGATTGAATTTCGCAATTACAGCGATTCGGCGCTCCAA
GCCCGCGTCAAGCGCCATTATCGTGGAATGCGCCAAAATCAGACCGTGGC
GTTCTACGAGAAAATGGAGGAGAAGTATTCATTTGCCCCGGGAAAACATC
GCGCTGAAATGACAGTTCGCGAGGCCTTTCAAGCATTGGAGGCGTACGTT
GATTCCTCTGATCCTGACATGGACTTGCCCAACCTCATTCACATGCTCCA
GACTGCGGAGGGTATCCGCAAGGCTGGCCATCCCGACTGGATGCAGCTCA
TCGGCCTCTTACATGACATGGGCAAGATTCAATTTTTGTGGGGAAAGAGG
GAGGATGGGCAGGAGGGTACGGGGGAGGGAGCACAGTGGGCCTTGGGAGG
GGACACGTGGGTGTTGGGGTGCGCGATCCCCTCAACGGTGGTATTCCCAG
AATTTAACGGCTTGAATCCTGATGAGCAAGATGAGCGATATAATGGTAGA
AATGGGATGTACGAGGAAGGGTGTGGTATAGAGCAATTGAAGTGGGCGTG
GGGACATGACGAATACATGTACCGCATGCTGGTCGCGAATGGAGCGACGT
TGCCCAAGGAGGGCTTAGCGATGGTGAGGTACCATTCCGCCTACCCCTGG
CACGATAAGGGGGAATATGGCCAGTTTATGAAGCCTGGAGACGAGATGTT
GATGGCTGCGGTGAAAAAATTTAACGTATTTGATTTGTATACGAAAGACG
AGGGGAAGGGGGTGGATGTCGACAAAGTGTGGCCGTATTATCAGGGGTTG
ATTGAGAAGTATCTGGGAACAGGCCCGTTGCGGTGGTGA
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Synonyms
Publications