NO15G02520.1, NO15G02520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02520.1
Unique NameNO15G02520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2694
Alignment locationchr15:690191..692884 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:690191..692884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02520.1 vs.
Match: EWM22318.1 (trehalose-6-phosphate phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 545.4 bits (1404), Expect = 1.500e-151
Identity = 288/385 (74.81%), Postives = 315/385 (81.82%), Query Frame = 0 
Query:    1 MAAVLATVASPTDNKTATPGSGGGQDSSRVAHQHHHHVVGGS-SSLDTIT-CHHTMKHHWEKDDDEGEGEGRLPNHKRRLSISSSNALENFECFQDVVKSKRVVVLLDYDGTLTPIVNDPAKAHLPTGTRDILVELAERCVVGIVSGRSLPKVKGFVQVPSLFYAGSHGFDIWGPTTESMRYQVAADQLPHLATLRDSLTEKLSGITGAAVEDNLFSVSVHYRNCAPDDVPAVYEAVQAARQGFPGIRFGTGKCVFELRPDITWDKGKAMVWLLQALGLWEEEDVFAIYIGDDTTDEDAFQIFNREARADGVGIVVTAENKLTGAKYSLRNPEEVAVFLSRLVETRGHVEAGQAGNRSVKDVKLDLARPALEGAFERQCEWEEKK 384
            MAAV+AT AS T       G+GG    S       + + GG+  SL       H  KH WE +++E +GEGR P+HKR+LS+SSSN L+N  C +DVV+SKRVVVLLDYDGTLTPIV+DPAKA LP  TRDILVELAERCVVGIVSGRSL KVKGFVQVPSLFYAGSHGFDIWGPTTESMRYQVAADQLP LA LRD+LTE+L GI GAAVEDN+FSVSVHYRNCAPDDVPAVYE VQ ARQ FP IRFGTGKCVFELRPDITWDKGKAMVWLLQALGLWEEEDVFAIYIGDDTTDEDAF+IF+ E RA+G+GIVVTAENKLTGAKYSLRNPEEVAVFL+RLVE RGHV+A   GN SVKD+K+D AR  L GAFE      EKK
Sbjct:    1 MAAVVATAASATKAHNGGSGAGGQGGES-------NGITGGAYQSLSREDGAPHKTKHCWEVEEEE-KGEGRKPSHKRQLSVSSSNVLDNMGCLEDVVRSKRVVVLLDYDGTLTPIVSDPAKAWLPAQTRDILVELAERCVVGIVSGRSLLKVKGFVQVPSLFYAGSHGFDIWGPTTESMRYQVAADQLPDLARLRDTLTEQLRGIEGAAVEDNVFSVSVHYRNCAPDDVPAVYEIVQTARQAFPSIRFGTGKCVFELRPDITWDKGKAMVWLLQALGLWEEEDVFAIYIGDDTTDEDAFRIFHHEDRAEGIGIVVTAENKLTGAKYSLRNPEEVAVFLARLVELRGHVQA--EGNSSVKDIKMDWARTPLAGAFEPGNPAGEKK 375
The following BLAST results are available for this feature:
BLAST of NO15G02520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22318.11.500e-15174.81trehalose-6-phosphate phosphatase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02520NO15G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02520.1NO15G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02520.1.cds1NO15G02520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02520.1 ID=NO15G02520.1|Name=NO15G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp
ATTTCTCTTTCCTGAATGAAAAGCAAAGACAACCAGTACCCGCACATGCG
AGCCCATCTAAATGCCACTCGAGTGATTTTTAAGTGTGTCATGTCTTGTC
CTGCCTGTCCCTATGGAGCGAGTTGGCGTCGTGCTGAATGCCAGAGGCCG
GGGCATATCATTGTCTCATGTCATCGCCCTTGGGTGTGACGTGTAAGGCG
AGTGGGTGTCTGATGGGGATGACTGGCCACCCAGACTCACGTTCCATTTC
ATTTCATCCGCCACGTGCCCGTTTTTCATGTCTCACTCGTATCTTGAGAG
AGTGGCAACGTGGGGGCCAATGCACGTGACTTTCAAGGCAGCCTCGTCTT
GACATCACGCGTCTCAAGAGGAATTGAAGCCTCGAGATCTAAAATTACCG
GCCTCCACGCTGTCCGTCGTCCTTCGTACAATACTCACAAATTCACGACT
AGGGACAGGAACAGGCAGCACAGGACAATGGTGACACTTTAAATTATTGT
GAGCCCCAGATGCAGGCCTCCTGGAGTCGCTTGCCCTCGGTGCCCAGCGC
TGGGAATGTGATGCTGTTGTCCAGTGGATCTCCCGTACCCACTCGCCTTT
GACCCCCATCCTTCACCCACATACACACACAGGGCCCGGCTGGTCAGCCG
CTGGAGGCAGTCGCCTTGTAAGCGTGGCCGAAGAGTCGTACATTTCTATC
CAGTGGCAACAGCAGCAGTAACAGCGAGGAGGGAGGAACTTCAATCGAAC
GGAAAGGAACCTGCGCATCCACATCACTAAGGAAAAGTGGCGTAGAAGCA
GCAGGAACCGCAGTATTAGAGGCAGCCTGCATCATCAGTATAGTATATCA
GAAGTGTAGAGATAGCATAATTCATGGCCGCAGTACTAGCAACCGTGGCT
TCGCCCACTGACAATAAAACCGCCACTCCGGGATCAGGGGGAGGACAAGA
CAGCAGCAGGGTGGCGCATCAACATCATCACCATGTCGTGGGCGGAAGCA
GCAGCCTGGATACGATCACCTGCCACCACACGATGAAGCACCATTGGGAA
AAGGACGACGATGAAGGTGAAGGGGAAGGCCGCTTGCCTAACCACAAACG
GCGACTCTCCATCTCCTCTTCCAATGCCTTAGAAAATTTTGAGTGTTTTC
AAGACGTTGTGAAGAGCAAGCGCGTTGTCGTCCTTCTTGACTACGACGGC
ACCCTCACCCCTATCGTTAATGACCCTGCCAAAGCCCATCTCCCCACGGG
CACTCGGGACATTCTCGTCGAGCTTGCCGAACGCTGCGTGGTGGGTATTG
TCTCTGGGCGGTCGTTGCCAAAGGTCAAAGGCTTCGTCCAGGTGCCGTCG
CTTTTTTATGCAGGCTCGCACGGGTTTGACATATGGGGACCGACAACTGA
GTCGATGAGGTACCAGGTAGCCGCGGATCAGCTGCCGCATCTCGCGACTT
TGAGAGACAGTTTGACGGAAAAATTGTCGGGCATAACTGGGGCGGCAGTG
GAGGACAATTTATTCAGTGTCTCGGTGCACTACCGAAATTGTGCGCCCGA
TGACGTCCCGGCCGTTTACGAGGCAGTGCAAGCGGCTCGCCAGGGGTTTC
CGGGTATTCGATTCGGGACGGGGAAGTGTGTGTTTGAGCTGCGTCCCGAT
ATTACGTGGGACAAGGGAAAGGCAATGGTGTGGTTGCTGCAGGCGCTGGG
GTTGTGGGAGGAGGAGGACGTATTTGCGATCTATATTGGGGACGACACGA
CGGATGAGGATGCGTTTCAAATCTTCAACAGGGAGGCTCGGGCGGATGGA
GTGGGCATTGTGGTTACGGCGGAGAATAAATTGACGGGGGCGAAGTACAG
TTTAAGAAATCCGGAGGAAGTAGCGGTGTTTTTGTCGAGGTTGGTAGAGA
CGAGAGGGCACGTGGAGGCGGGTCAAGCCGGAAACAGAAGTGTGAAGGAC
GTGAAATTGGACCTAGCACGACCGGCGTTGGAAGGAGCGTTTGAGAGACA
ATGCGAGTGGGAGGAGAAGAAGGTGGGGGGGAGGGAGGGAAGGAGGAGGG
GAATGTGTAAAATTAAAACACGTATGAGTGCAGGGAGGGAGGAAGAGGGG
GATTAGTAAGTGCTGGGACGAAGAAAGGGGGGAGTGATAGGAGAGTAAGA
TAACGCTTTTGCGACGAATGTGCGTGTGTCGTGTGTGTATGTATGTGTGA
GTTTTTTATGTGTATACCCTTCATGATCAGACCATCATATTTGGCTCGAG
AACCCCCCCGTGTGTGTTTGTGGGTGTGGGTGCATAGGTGTAAACTAGAG
CAGCCCTCTGACTCCTTGTCTGAATGCTCATATTATTAGAATGAAGGGGT
CGGCAACTGCTGCTGCGGCTGCTGCTGCTGCTGCTGCTTCTATCGCTGCG
AGTGGTTAGAGCGGTGGTCAAGGCGCGTGCACATCACGGGAGCAGGTCTG
GCGTGCTTTTATAGTCATACAGGCATAGATGCCTTCATTGTTTGAATTGT
AAGTAGGATGCGGTTGAATGCAGTGAGGAGCGAGAATCATTTCCCTCCTT
TCGCGTCGCGCCGTTTCCAGTTTGTGAGGAGGAACGGTAAAGTCTCAGCC
ATAGAAATATTAAAAGAGAAGAGGAAAGACAAACGACCACGAACGGAGTA
AGGTATTCTAATCAAACGAACCGCGAAGACTCGCTTTCGAGATG
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protein sequence of NO15G02520.1

>NO15G02520.1-protein ID=NO15G02520.1-protein|Name=NO15G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MAAVLATVASPTDNKTATPGSGGGQDSSRVAHQHHHHVVGGSSSLDTITC
HHTMKHHWEKDDDEGEGEGRLPNHKRRLSISSSNALENFECFQDVVKSKR
VVVLLDYDGTLTPIVNDPAKAHLPTGTRDILVELAERCVVGIVSGRSLPK
VKGFVQVPSLFYAGSHGFDIWGPTTESMRYQVAADQLPHLATLRDSLTEK
LSGITGAAVEDNLFSVSVHYRNCAPDDVPAVYEAVQAARQGFPGIRFGTG
KCVFELRPDITWDKGKAMVWLLQALGLWEEEDVFAIYIGDDTTDEDAFQI
FNREARADGVGIVVTAENKLTGAKYSLRNPEEVAVFLSRLVETRGHVEAG
QAGNRSVKDVKLDLARPALEGAFERQCEWEEKKVGGREGRRRGMCKIKTR
MSAGREEEGD*
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mRNA from alignment at chr15:690191..692884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02520.1 ID=NO15G02520.1|Name=NO15G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp|location=Sequence derived from alignment at chr15:690191..692884+ (Nannochloropsis oceanica)
ATTTCTCTTTCCTGAATGAAAAGCAAAGACAACCAGTACCCGCACATGCG
AGCCCATCTAAATGCCACTCGAGTGATTTTTAAGTGTGTCATGTCTTGTC
CTGCCTGTCCCTATGGAGCGAGTTGGCGTCGTGCTGAATGCCAGAGGCCG
GGGCATATCATTGTCTCATGTCATCGCCCTTGGGTGTGACGTGTAAGGCG
AGTGGGTGTCTGATGGGGATGACTGGCCACCCAGACTCACGTTCCATTTC
ATTTCATCCGCCACGTGCCCGTTTTTCATGTCTCACTCGTATCTTGAGAG
AGTGGCAACGTGGGGGCCAATGCACGTGACTTTCAAGGCAGCCTCGTCTT
GACATCACGCGTCTCAAGAGGAATTGAAGCCTCGAGATCTAAAATTACCG
GCCTCCACGCTGTCCGTCGTCCTTCGTACAATACTCACAAATTCACGACT
AGGGACAGGAACAGGCAGCACAGGACAATGGTGACACTTTAAATTATTGT
GAGCCCCAGATGCAGGCCTCCTGGAGTCGCTTGCCCTCGGTGCCCAGCGC
TGGGAATGTGATGCTGTTGTCCAGTGGATCTCCCGTACCCACTCGCCTTT
GACCCCCATCCTTCACCCACATACACACACAGGGCCCGGCTGGTCAGCCG
CTGGAGGCAGTCGCCTTGTAAGCGTGGCCGAAGAGTCGTACATTTCTATC
CAGTGGCAACAGCAGCAGTAACAGCGAGGAGGGAGGAACTTCAATCGAAC
GGAAAGGAACCTGCGCATCCACATCACTAAGGAAAAGTGGCGTAGAAGCA
GCAGGAACCGCAGTATTAGAGGCAGCCTGCATCATCAGTATAGTATATCA
GAAGTGTAGAGATAGCATAATTCATGGCCGCAGTACTAGCAACCGTGGCT
TCGCCCACTGACAATAAAACCGCCACTCCGGGATCAGGGGGAGGACAAGA
CAGCAGCAGGGTGGCGCATCAACATCATCACCATGTCGTGGGCGGAAGCA
GCAGCCTGGATACGATCACCTGCCACCACACGATGAAGCACCATTGGGAA
AAGGACGACGATGAAGGTGAAGGGGAAGGCCGCTTGCCTAACCACAAACG
GCGACTCTCCATCTCCTCTTCCAATGCCTTAGAAAATTTTGAGTGTTTTC
AAGACGTTGTGAAGAGCAAGCGCGTTGTCGTCCTTCTTGACTACGACGGC
ACCCTCACCCCTATCGTTAATGACCCTGCCAAAGCCCATCTCCCCACGGG
CACTCGGGACATTCTCGTCGAGCTTGCCGAACGCTGCGTGGTGGGTATTG
TCTCTGGGCGGTCGTTGCCAAAGGTCAAAGGCTTCGTCCAGGTGCCGTCG
CTTTTTTATGCAGGCTCGCACGGGTTTGACATATGGGGACCGACAACTGA
GTCGATGAGGTACCAGGTAGCCGCGGATCAGCTGCCGCATCTCGCGACTT
TGAGAGACAGTTTGACGGAAAAATTGTCGGGCATAACTGGGGCGGCAGTG
GAGGACAATTTATTCAGTGTCTCGGTGCACTACCGAAATTGTGCGCCCGA
TGACGTCCCGGCCGTTTACGAGGCAGTGCAAGCGGCTCGCCAGGGGTTTC
CGGGTATTCGATTCGGGACGGGGAAGTGTGTGTTTGAGCTGCGTCCCGAT
ATTACGTGGGACAAGGGAAAGGCAATGGTGTGGTTGCTGCAGGCGCTGGG
GTTGTGGGAGGAGGAGGACGTATTTGCGATCTATATTGGGGACGACACGA
CGGATGAGGATGCGTTTCAAATCTTCAACAGGGAGGCTCGGGCGGATGGA
GTGGGCATTGTGGTTACGGCGGAGAATAAATTGACGGGGGCGAAGTACAG
TTTAAGAAATCCGGAGGAAGTAGCGGTGTTTTTGTCGAGGTTGGTAGAGA
CGAGAGGGCACGTGGAGGCGGGTCAAGCCGGAAACAGAAGTGTGAAGGAC
GTGAAATTGGACCTAGCACGACCGGCGTTGGAAGGAGCGTTTGAGAGACA
ATGCGAGTGGGAGGAGAAGAAGGTGGGGGGGAGGGAGGGAAGGAGGAGGG
GAATGTGTAAAATTAAAACACGTATGAGTGCAGGGAGGGAGGAAGAGGGG
GATTAGTAAGTGCTGGGACGAAGAAAGGGGGGAGTGATAGGAGAGTAAGA
TAACGCTTTTGCGACGAATGTGCGTGTGTCGTGTGTGTATGTATGTGTGA
GTTTTTTATGTGTATACCCTTCATGATCAGACCATCATATTTGGCTCGAG
AACCCCCCCGTGTGTGTTTGTGGGTGTGGGTGCATAGGTGTAAACTAGAG
CAGCCCTCTGACTCCTTGTCTGAATGCTCATATTATTAGAATGAAGGGGT
CGGCAACTGCTGCTGCGGCTGCTGCTGCTGCTGCTGCTTCTATCGCTGCG
AGTGGTTAGAGCGGTGGTCAAGGCGCGTGCACATCACGGGAGCAGGTCTG
GCGTGCTTTTATAGTCATACAGGCATAGATGCCTTCATTGTTTGAATTGT
AAGTAGGATGCGGTTGAATGCAGTGAGGAGCGAGAATCATTTCCCTCCTT
TCGCGTCGCGCCGTTTCCAGTTTGTGAGGAGGAACGGTAAAGTCTCAGCC
ATAGAAATATTAAAAGAGAAGAGGAAAGACAAACGACCACGAACGGAGTA
AGGTATTCTAATCAAACGAACCGCGAAGACTCGCTTTCGAGATG
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Coding sequence (CDS) from alignment at chr15:690191..692884+

>NO15G02520.1 ID=NO15G02520.1|Name=NO15G02520.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr15:690191..692884+ (Nannochloropsis oceanica)
ATGGCCGCAGTACTAGCAACCGTGGCTTCGCCCACTGACAATAAAACCGC
CACTCCGGGATCAGGGGGAGGACAAGACAGCAGCAGGGTGGCGCATCAAC
ATCATCACCATGTCGTGGGCGGAAGCAGCAGCCTGGATACGATCACCTGC
CACCACACGATGAAGCACCATTGGGAAAAGGACGACGATGAAGGTGAAGG
GGAAGGCCGCTTGCCTAACCACAAACGGCGACTCTCCATCTCCTCTTCCA
ATGCCTTAGAAAATTTTGAGTGTTTTCAAGACGTTGTGAAGAGCAAGCGC
GTTGTCGTCCTTCTTGACTACGACGGCACCCTCACCCCTATCGTTAATGA
CCCTGCCAAAGCCCATCTCCCCACGGGCACTCGGGACATTCTCGTCGAGC
TTGCCGAACGCTGCGTGGTGGGTATTGTCTCTGGGCGGTCGTTGCCAAAG
GTCAAAGGCTTCGTCCAGGTGCCGTCGCTTTTTTATGCAGGCTCGCACGG
GTTTGACATATGGGGACCGACAACTGAGTCGATGAGGTACCAGGTAGCCG
CGGATCAGCTGCCGCATCTCGCGACTTTGAGAGACAGTTTGACGGAAAAA
TTGTCGGGCATAACTGGGGCGGCAGTGGAGGACAATTTATTCAGTGTCTC
GGTGCACTACCGAAATTGTGCGCCCGATGACGTCCCGGCCGTTTACGAGG
CAGTGCAAGCGGCTCGCCAGGGGTTTCCGGGTATTCGATTCGGGACGGGG
AAGTGTGTGTTTGAGCTGCGTCCCGATATTACGTGGGACAAGGGAAAGGC
AATGGTGTGGTTGCTGCAGGCGCTGGGGTTGTGGGAGGAGGAGGACGTAT
TTGCGATCTATATTGGGGACGACACGACGGATGAGGATGCGTTTCAAATC
TTCAACAGGGAGGCTCGGGCGGATGGAGTGGGCATTGTGGTTACGGCGGA
GAATAAATTGACGGGGGCGAAGTACAGTTTAAGAAATCCGGAGGAAGTAG
CGGTGTTTTTGTCGAGGTTGGTAGAGACGAGAGGGCACGTGGAGGCGGGT
CAAGCCGGAAACAGAAGTGTGAAGGACGTGAAATTGGACCTAGCACGACC
GGCGTTGGAAGGAGCGTTTGAGAGACAATGCGAGTGGGAGGAGAAGAAGG
TGGGGGGGAGGGAGGGAAGGAGGAGGGGAATGTGTAAAATTAAAACACGT
ATGAGTGCAGGGAGGGAGGAAGAGGGGGATTAG
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Synonyms
Publications