|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr15 | genome | chr15:686982..689382 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G02510.1 vs.
Match: EWM22323.1 (hypothetical protein Naga_100118g8 [Nannochloropsis gaditana]) HSP 1 Score: 485.3 bits (1248), Expect = 2.900e-133 Identity = 329/635 (51.81%), Postives = 394/635 (62.05%), Query Frame = 0
Query: 55 MDGVYPLSETHKSLCASTMFAGMIAGQLLGGLLGDALGLSRAFKFIMLLQVAGAMGSTLVFPPQIYWKLAVARFFLGVGAGGVYPLAAAMSSNASSSSSSSSSSSSLSSNHNNNNNSN------------------RSSSSDRMVALVFSSQGVAFVSYNALALLLAYCLPLHPSSPSFSSFVSTTAITSHPSDKFFPLQVTNSSSNGSGSNSHSSNSTSKG-DQAVFRFLLGFGALPGLLILLLGWVTHCRRRRRDGAENRGRGGRGR-QMWGRPKPPRPSLSLLDDVVEDATAAGAGEDAEAALTLSSLPSL-------PLQGEEQVGVGAWAAGEHVWLALSDTGLRRRLLGCSLTWFLYDVCFFGNTLFQPVIGTILFGKGGENKEGGEGSGWSSGGGSSGFWRSSSSSIGNEVDYRATFRTDSQTSLILSLIALPGYFLSVLFITRLGPRYIQTQGFLVCALLYLLLACTGERLANSGQGWVAVILFGLSFTFFNFGPGSTTYLYPSRLFPRDVKASLNGVAAAAGKVGGWVGGYFFPPLLDSWGLEVVLAMCATIALVGAGVTVGMLETDVKGIGMRGEDEGMEENRGGRGDGEEEEEVGGSMLRLLPDD-----EEYEEEAREKITTV 658
MDG+YPLSE+HKSLCASTMFAGMI GQL+GG LGD +G+SRAF ++LQV A+GSTLV PPQ+YW+LA ARF LG+GAGGVYPLAAAMS NAS+ + +S S H SN S +DR VALVFS QGVAFV+ NA+AL+LA LPL ST + P + P S+ST++G DQ FRFLLG GALPG+++L W H RR + GR G + G KP RP LSLLDDVVED TA+G E+A+ AL SLP P + E G GA AA + AL D + R L+GC LTWFLYDVCFFGNTLFQPVIGT LF + +G GGG S S G E R +F +++TSLIL+LIALPGYFLSV I RLGPR++Q QGF++CA LYL+LA GERL N+GQG A++ FGLSFTFFNFGPG+TTYL+PS+LFPR+VKA+LNGVAAAAGKVGGWVGGY FP LLD+W LE VL MCA IAL+GAGVT G L G G E + E +GD + GG+ LLP++ +E + E ITTV
Sbjct: 1 MDGLYPLSESHKSLCASTMFAGMIIGQLVGGFLGDVMGVSRAFTLTIVLQVVAALGSTLVTPPQVYWQLAGARFVLGMGAGGVYPLAAAMSWNASAVARPPPASER-SGGHEGTEGSNVGPIEATLSADHGARHGCEGSKTDRPVALVFSMQGVAFVTMNAVALVLALVLPLQADR-------STGLQSWAPLTQALP----------------DSSSTNRGADQFAFRFLLGLGALPGVVVLGATWWIHRRR-------SLGRTGPSLCRPKGFRKPARPRLSLLDDVVED-TASGTEEEAQVALDPPSLPPSLPSSSCRPKEEELDAGAGARAASHALREALRDGRILRELVGCCLTWFLYDVCFFGNTLFQPVIGTALFQDKSPSDVRRHDNGGDRGGGRS--------SGGGEDSTRPSFLLEAETSLILALIALPGYFLSVWLIPRLGPRFVQIQGFVICATLYLVLAVCGERLTNAGQGGWALVFFGLSFTFFNFGPGATTYLFPSKLFPREVKATLNGVAAAAGKVGGWVGGYCFPLLLDAWTLEGVLGMCAAIALLGAGVTWGTL-------GWEGGREAVTE----KGDKKTGRGAGGASTPLLPENGEARADEKDGEDGTMITTV 584
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G02510.1 ID=NO15G02510.1|Name=NO15G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp
AAACACAGGAGCAGGCGTCGGCCTGTTCAGTCACCATGCCACCAACGTAT
CAATAGTTCGCCTTCTTTTCTGGCGTCATCATGGCGATCAACAACAGCAG
CTGGGTCGGCCGCCAGAGACAGTCCCTCCTTGCCTCCTTCCGCTTCCCGA
AGACCCGCCTCAGCATGGACATTCTCCTTTCCTGCATCGGGGGCTTTAGC
ACGGCGTACAACATTGTCAACATTTCGCTGGTCTTGGTGCTGATGGATGG
GGTTTATCCTTTGTCCGAAACTCACAAGAGTTTGTGTGCCTCGACCATGT
TTGCGGGCATGATCGCCGGGCAGCTTCTAGGTGGCTTGCTTGGGGATGCC
TTGGGCCTCTCGCGTGCGTTCAAATTCATCATGCTGCTGCAAGTCGCAGG
AGCTATGGGGAGCACATTGGTGTTTCCACCTCAGATTTATTGGAAGCTGG
CAGTGGCGAGGTTCTTCTTGGGGGTGGGGGCAGGAGGTGTTTATCCGTTG
GCGGCCGCTATGTCTTCAAACGCGTCTTCGTCGTCGTCGTCCTCTTCGTC
CTCGTCCTCTTTAAGCAGCAATCACAACAACAACAACAACAGCAACAGAA
GTAGTAGTAGTGATCGGATGGTTGCTCTCGTATTTTCTTCGCAGGGTGTG
GCGTTTGTTTCATATAATGCACTCGCCCTCCTTCTAGCCTACTGCCTACC
TCTCCACCCCTCCTCCCCCTCCTTCTCTTCCTTTGTCTCCACAACCGCCA
TCACCTCCCACCCGTCCGACAAATTCTTTCCGCTCCAGGTCACCAACAGC
AGTAGCAACGGCAGCGGCAGCAACAGCCATAGCAGCAATAGTACGAGTAA
GGGGGATCAGGCCGTCTTCCGCTTCCTCCTTGGCTTCGGTGCTCTCCCGG
GCCTACTCATCCTTCTCCTGGGATGGGTCACGCATTGCCGTCGTCGTCGC
CGCGATGGAGCGGAGAATAGAGGAAGGGGGGGACGAGGAAGACAAATGTG
GGGTCGTCCGAAACCCCCCCGCCCTTCCCTATCCCTCCTAGACGATGTGG
TGGAAGACGCCACTGCGGCAGGAGCTGGGGAGGACGCCGAGGCGGCCCTC
ACCCTCTCCTCCCTCCCTTCTTTGCCTTTGCAGGGGGAAGAACAAGTTGG
GGTGGGAGCATGGGCGGCGGGTGAGCATGTTTGGCTCGCATTGAGCGACA
CGGGTTTGAGGCGGCGTTTGCTCGGATGCAGCCTAACATGGTTCTTGTAT
GATGTCTGTTTTTTTGGTAATACCCTGTTTCAGCCCGTGATAGGGACGAT
ATTGTTTGGCAAGGGAGGAGAGAATAAGGAGGGAGGGGAGGGGAGTGGTT
GGAGCAGTGGAGGTGGTAGTAGCGGGTTCTGGAGAAGCAGCAGCAGCAGC
ATTGGGAATGAGGTGGACTACCGCGCGACTTTCCGGACGGATAGCCAGAC
AAGTTTGATCTTGTCACTCATTGCCCTACCTGGATACTTTCTCTCTGTCC
TTTTTATCACGCGCCTGGGCCCGCGCTATATCCAAACGCAGGGATTCTTG
GTATGTGCTCTTCTCTACCTCCTCCTGGCTTGTACAGGCGAACGCTTGGC
AAACTCAGGACAAGGGTGGGTAGCCGTCATCCTGTTCGGCCTCAGCTTTA
CCTTCTTTAATTTTGGACCAGGATCAACCACGTATTTATACCCTTCCAGA
TTATTCCCTAGGGACGTCAAGGCGTCTTTGAATGGCGTGGCGGCGGCTGC
GGGGAAGGTGGGTGGGTGGGTGGGTGGGTACTTCTTTCCTCCCTTGTTGG
ATTCGTGGGGGTTAGAGGTTGTGTTGGCCATGTGTGCGACGATTGCGTTG
GTGGGTGCTGGGGTGACAGTTGGGATGTTGGAGACGGATGTGAAGGGAAT
AGGAATGAGGGGGGAGGACGAGGGGATGGAGGAGAATCGGGGAGGGAGGG
GAGATGGAGAGGAGGAGGAGGAGGTTGGGGGGTCAATGCTGCGGCTGTTG
CCCGATGATGAGGAGTATGAGGAGGAGGCGAGGGAGAAGATCACAACGGT
GTAATATATCGACAAGAGTGTATGCAGAACTGCGTGTATGCGGGAGTTGG
GACGGGAGGAGGGGGAATGGTTTTTGTATTTATGCGATTTCCCGAAAAGA
ACGAAAGGCCATGGGTAAAAGCAATGTCTTATCGTGATGCAAAAGAACTT
GCACCAAAAAATTGC back to topprotein sequence of NO15G02510.1 >NO15G02510.1-protein ID=NO15G02510.1-protein|Name=NO15G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=658bp
MAINNSSWVGRQRQSLLASFRFPKTRLSMDILLSCIGGFSTAYNIVNISL
VLVLMDGVYPLSETHKSLCASTMFAGMIAGQLLGGLLGDALGLSRAFKFI
MLLQVAGAMGSTLVFPPQIYWKLAVARFFLGVGAGGVYPLAAAMSSNASS
SSSSSSSSSSLSSNHNNNNNSNRSSSSDRMVALVFSSQGVAFVSYNALAL
LLAYCLPLHPSSPSFSSFVSTTAITSHPSDKFFPLQVTNSSSNGSGSNSH
SSNSTSKGDQAVFRFLLGFGALPGLLILLLGWVTHCRRRRRDGAENRGRG
GRGRQMWGRPKPPRPSLSLLDDVVEDATAAGAGEDAEAALTLSSLPSLPL
QGEEQVGVGAWAAGEHVWLALSDTGLRRRLLGCSLTWFLYDVCFFGNTLF
QPVIGTILFGKGGENKEGGEGSGWSSGGGSSGFWRSSSSSIGNEVDYRAT
FRTDSQTSLILSLIALPGYFLSVLFITRLGPRYIQTQGFLVCALLYLLLA
CTGERLANSGQGWVAVILFGLSFTFFNFGPGSTTYLYPSRLFPRDVKASL
NGVAAAAGKVGGWVGGYFFPPLLDSWGLEVVLAMCATIALVGAGVTVGML
ETDVKGIGMRGEDEGMEENRGGRGDGEEEEEVGGSMLRLLPDDEEYEEEA
REKITTV* back to topmRNA from alignment at chr15:686982..689382- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G02510.1 ID=NO15G02510.1|Name=NO15G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at chr15:686982..689382- (Nannochloropsis oceanica)
AAACACAGGAGCAGGCGTCGGCCTGTTCAGTCACCATGCCACCAACGTAT
CAATAGTTCGCCTTCTTTTCTGGCGTCATCATGGCGATCAACAACAGCAG
CTGGGTCGGCCGCCAGAGACAGTCCCTCCTTGCCTCCTTCCGCTTCCCGA
AGACCCGCCTCAGCATGGACATTCTCCTTTCCTGCATCGGGGGCTTTAGC
ACGGCGTACAACATTGTCAACATTTCGCTGGTCTTGGTGCTGATGGATGG
GGTTTATCCTTTGTCCGAAACTCACAAGAGTTTGTGTGCCTCGACCATGT
TTGCGGGTATGTGCCTGTCCTATTGTGAATGCGGTTGACTTTTCTTGTTC
GCACTTTCTCCTGTTTGGTGTCGTGTGATGACTTCCTGATCGCATGGTTC
TATCTTCCACCTTTCTTTTGATGTTGGCTGATTCGCCCATCTTCCTCTCA
TCCTTCGCTCTTTCCATTTCCGTCTCTCTTCCCTCCCATTAGGCATGATC
GCCGGGCAGCTTCTAGGTGGCTTGCTTGGGGATGCCTTGGGCCTCTCGCG
TGCGTTCAAATTCATCATGCTGCTGCAAGTCGCAGGAGCTATGGGGAGCA
CATTGGTGTTTCCACCTCAGATTTATTGGAAGCTGGCAGTGGCGAGGTTC
TTCTTGGGGGTGGGGGCAGGAGGTGTTTATCCGTTGGCGGCCGCTATGTC
TTCAAACGCGTCTTCGTCGTCGTCGTCCTCTTCGTCCTCGTCCTCTTTAA
GCAGCAATCACAACAACAACAACAACAGCAACAGAAGTAGTAGTAGTGAT
CGGATGGTTGCTCTCGTATTTTCTTCGCAGGGTGTGGCGTTTGTTTCATA
TAATGCACTCGCCCTCCTTCTAGCCTACTGCCTACCTCTCCACCCCTCCT
CCCCCTCCTTCTCTTCCTTTGTCTCCACAACCGCCATCACCTCCCACCCG
TCCGACAAATTCTTTCCGCTCCAGGTCACCAACAGCAGTAGCAACGGCAG
CGGCAGCAACAGCCATAGCAGCAATAGTACGAGTAAGGGGGATCAGGCCG
TCTTCCGCTTCCTCCTTGGCTTCGGTGCTCTCCCGGGCCTACTCATCCTT
CTCCTGGGATGGGTCACGCATTGCCGTCGTCGTCGCCGCGATGGAGCGGA
GAATAGAGGAAGGGGGGGACGAGGAAGACAAATGTGGGGTCGTCCGAAAC
CCCCCCGCCCTTCCCTATCCCTCCTAGACGATGTGGTGGAAGACGCCACT
GCGGCAGGAGCTGGGGAGGACGCCGAGGCGGCCCTCACCCTCTCCTCCCT
CCCTTCTTTGCCTTTGCAGGGGGAAGAACAAGTTGGGGTGGGAGCATGGG
CGGCGGGTGAGCATGTTTGGCTCGCATTGAGCGACACGGGTTTGAGGCGG
CGTTTGCTCGGATGCAGCCTAACATGGTTCTTGTATGATGTCTGTTTTTT
TGGTAATACCCTGTTTCAGCCCGTGATAGGGACGATATTGTTTGGCAAGG
GAGGAGAGAATAAGGAGGGAGGGGAGGGGAGTGGTTGGAGCAGTGGAGGT
GGTAGTAGCGGGTTCTGGAGAAGCAGCAGCAGCAGCATTGGGAATGAGGT
GGACTACCGCGCGACTTTCCGGACGGATAGCCAGACAAGTTTGATCTTGT
CACTCATTGCCCTACCTGGATACTTTCTCTCTGTCCTTTTTATCACGCGC
CTGGGCCCGCGCTATATCCAAACGCAGGGATTCTTGGTATGTGCTCTTCT
CTACCTCCTCCTGGCTTGTACAGGCGAACGCTTGGCAAACTCAGGACAAG
GGTGGGTAGCCGTCATCCTGTTCGGCCTCAGCTTTACCTTCTTTAATTTT
GGACCAGGATCAACCACGTATTTATACCCTTCCAGATTATTCCCTAGGGA
CGTCAAGGCGTCTTTGAATGGCGTGGCGGCGGCTGCGGGGAAGGTGGGTG
GGTGGGTGGGTGGGTACTTCTTTCCTCCCTTGTTGGATTCGTGGGGGTTA
GAGGTTGTGTTGGCCATGTGTGCGACGATTGCGTTGGTGGGTGCTGGGGT
GACAGTTGGGATGTTGGAGACGGATGTGAAGGGAATAGGAATGAGGGGGG
AGGACGAGGGGATGGAGGAGAATCGGGGAGGGAGGGGAGATGGAGAGGAG
GAGGAGGAGGTTGGGGGGTCAATGCTGCGGCTGTTGCCCGATGATGAGGA
GTATGAGGAGGAGGCGAGGGAGAAGATCACAACGGTGTAATATATCGACA
AGAGTGTATGCAGAACTGCGTGTATGCGGGAGTTGGGACGGGAGGAGGGG
GAATGGTTTTTGTATTTATGCGATTTCCCGAAAAGAACGAAAGGCCATGG
GTAAAAGCAATGTCTTATCGTGATGCAAAAGAACTTGCACCAAAAAATTG
C back to topCoding sequence (CDS) from alignment at chr15:686982..689382- >NO15G02510.1 ID=NO15G02510.1|Name=NO15G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at chr15:686982..689382- (Nannochloropsis oceanica)
ATGGCGATCAACAACAGCAGCTGGGTCGGCCGCCAGAGACAGTCCCTCCT
TGCCTCCTTCCGCTTCCCGAAGACCCGCCTCAGCATGGACATTCTCCTTT
CCTGCATCGGGGGCTTTAGCACGGCGTACAACATTGTCAACATTTCGCTG
GTCTTGGTGCTGATGGATGGGGTTTATCCTTTGTCCGAAACTCACAAGAG
TTTGTGTGCCTCGACCATGTTTGCGGGCATGATCGCCGGGCAGCTTCTAG
GTGGCTTGCTTGGGGATGCCTTGGGCCTCTCGCGTGCGTTCAAATTCATC
ATGCTGCTGCAAGTCGCAGGAGCTATGGGGAGCACATTGGTGTTTCCACC
TCAGATTTATTGGAAGCTGGCAGTGGCGAGGTTCTTCTTGGGGGTGGGGG
CAGGAGGTGTTTATCCGTTGGCGGCCGCTATGTCTTCAAACGCGTCTTCG
TCGTCGTCGTCCTCTTCGTCCTCGTCCTCTTTAAGCAGCAATCACAACAA
CAACAACAACAGCAACAGAAGTAGTAGTAGTGATCGGATGGTTGCTCTCG
TATTTTCTTCGCAGGGTGTGGCGTTTGTTTCATATAATGCACTCGCCCTC
CTTCTAGCCTACTGCCTACCTCTCCACCCCTCCTCCCCCTCCTTCTCTTC
CTTTGTCTCCACAACCGCCATCACCTCCCACCCGTCCGACAAATTCTTTC
CGCTCCAGGTCACCAACAGCAGTAGCAACGGCAGCGGCAGCAACAGCCAT
AGCAGCAATAGTACGAGTAAGGGGGATCAGGCCGTCTTCCGCTTCCTCCT
TGGCTTCGGTGCTCTCCCGGGCCTACTCATCCTTCTCCTGGGATGGGTCA
CGCATTGCCGTCGTCGTCGCCGCGATGGAGCGGAGAATAGAGGAAGGGGG
GGACGAGGAAGACAAATGTGGGGTCGTCCGAAACCCCCCCGCCCTTCCCT
ATCCCTCCTAGACGATGTGGTGGAAGACGCCACTGCGGCAGGAGCTGGGG
AGGACGCCGAGGCGGCCCTCACCCTCTCCTCCCTCCCTTCTTTGCCTTTG
CAGGGGGAAGAACAAGTTGGGGTGGGAGCATGGGCGGCGGGTGAGCATGT
TTGGCTCGCATTGAGCGACACGGGTTTGAGGCGGCGTTTGCTCGGATGCA
GCCTAACATGGTTCTTGTATGATGTCTGTTTTTTTGGTAATACCCTGTTT
CAGCCCGTGATAGGGACGATATTGTTTGGCAAGGGAGGAGAGAATAAGGA
GGGAGGGGAGGGGAGTGGTTGGAGCAGTGGAGGTGGTAGTAGCGGGTTCT
GGAGAAGCAGCAGCAGCAGCATTGGGAATGAGGTGGACTACCGCGCGACT
TTCCGGACGGATAGCCAGACAAGTTTGATCTTGTCACTCATTGCCCTACC
TGGATACTTTCTCTCTGTCCTTTTTATCACGCGCCTGGGCCCGCGCTATA
TCCAAACGCAGGGATTCTTGGTATGTGCTCTTCTCTACCTCCTCCTGGCT
TGTACAGGCGAACGCTTGGCAAACTCAGGACAAGGGTGGGTAGCCGTCAT
CCTGTTCGGCCTCAGCTTTACCTTCTTTAATTTTGGACCAGGATCAACCA
CGTATTTATACCCTTCCAGATTATTCCCTAGGGACGTCAAGGCGTCTTTG
AATGGCGTGGCGGCGGCTGCGGGGAAGGTGGGTGGGTGGGTGGGTGGGTA
CTTCTTTCCTCCCTTGTTGGATTCGTGGGGGTTAGAGGTTGTGTTGGCCA
TGTGTGCGACGATTGCGTTGGTGGGTGCTGGGGTGACAGTTGGGATGTTG
GAGACGGATGTGAAGGGAATAGGAATGAGGGGGGAGGACGAGGGGATGGA
GGAGAATCGGGGAGGGAGGGGAGATGGAGAGGAGGAGGAGGAGGTTGGGG
GGTCAATGCTGCGGCTGTTGCCCGATGATGAGGAGTATGAGGAGGAGGCG
AGGGAGAAGATCACAACGGTGTAA back to top
|