NO15G02410.1, NO15G02410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02410.1
Unique NameNO15G02410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr15:665594..666340 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:665594..666340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02410.1 vs.
Match: EWM22319.1 (tp53-regulating kinase [Nannochloropsis gaditana])

HSP 1 Score: 381.7 bits (979), Expect = 1.700e-102
Identity = 195/248 (78.63%), Postives = 217/248 (87.50%), Query Frame = 0 
Query:    1 MAKSSTVTDATRSTDGLVLLAQGAEARVFELPSFLGGRPAIVKERFAKSYRLPVLDSKLTKQRTVGEVRCMLRCAKAGVHAPCVYMVDAQASRIYMEKIEGRTLKAFLRDEYDEATRTYTSVAHALVRELGTAVARIHNAEMVHGDLTTSNFLVVGKDDCEGEGQVLPLHKLVAIDFGLGFLQPLPEDKAVDLYVLERAFVSTHPNSQGLVDLAMAAYERSSPSHRSALVLKKLEDVRRRGRKRDMFG 249
            MA SS+    +RSTDGLVLL+QGAEARVFELPSFLGGRPAIVKERFAKSYRLPVLD+KLTKQRTVGEVRCMLRCAK GVHAPCVYMVD QASRIYME+IEGR+ KAFLRD +++ATR+YT  AH L  ELG  VARIH+AEMVHGDLTTSN +V+G++D + + Q +  H+LV IDFGLGFLQPLPEDKAVDLYVLERAF+STHPNS+ LVD AMAAY R S SH+S  VLKKLEDVRRRGRKRDMFG
Sbjct:    1 MAVSSSARVDSRSTDGLVLLSQGAEARVFELPSFLGGRPAIVKERFAKSYRLPVLDAKLTKQRTVGEVRCMLRCAKVGVHAPCVYMVDMQASRIYMERIEGRSFKAFLRDHFNDATRSYTPAAHELADELGKVVARIHDAEMVHGDLTTSNVMVMGEEDGKSKAQDVS-HRLVVIDFGLGFLQPLPEDKAVDLYVLERAFLSTHPNSEELVDRAMAAYARHSSSHQSKAVLKKLEDVRRRGRKRDMFG 247
The following BLAST results are available for this feature:
BLAST of NO15G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22319.11.700e-10278.63tp53-regulating kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02410NO15G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02410.1NO15G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02410.1.cds1NO15G02410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02410.1 ID=NO15G02410.1|Name=NO15G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGGCTAAGTCTTCCACAGTCACCGACGCTACCCGCAGCACGGACGGTCT
TGTCTTGCTGGCTCAAGGTGCCGAGGCCCGGGTTTTTGAGCTGCCATCGT
TCTTGGGAGGCCGCCCCGCCATAGTCAAGGAGCGATTTGCCAAGTCCTAT
CGCCTTCCCGTGCTCGACTCCAAGCTGACCAAGCAACGCACCGTGGGTGA
AGTCAGATGCATGCTGCGGTGCGCTAAAGCAGGGGTACATGCGCCGTGCG
TGTACATGGTGGACGCGCAGGCCTCACGGATTTACATGGAAAAGATTGAG
GGGCGGACACTCAAGGCATTCCTGAGAGATGAGTACGATGAAGCCACGAG
AACCTACACTTCCGTAGCCCACGCCTTGGTCAGGGAGCTTGGCACGGCAG
TGGCACGAATTCACAATGCCGAGATGGTACACGGGGACTTGACCACGTCC
AACTTTCTAGTGGTGGGCAAAGACGACTGTGAAGGGGAAGGGCAAGTCTT
ACCCCTGCACAAGCTCGTGGCGATCGACTTTGGCCTGGGGTTTTTGCAGC
CTTTGCCGGAAGACAAGGCCGTGGACCTTTATGTTTTGGAACGGGCTTTT
GTCTCGACGCATCCCAATTCACAAGGATTGGTCGATCTGGCGATGGCAGC
GTATGAGCGGAGTTCTCCTTCACATCGCTCGGCCTTGGTGCTTAAAAAGC
TGGAGGACGTACGACGGCGGGGACGCAAACGAGACATGTTTGGATAG
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protein sequence of NO15G02410.1

>NO15G02410.1-protein ID=NO15G02410.1-protein|Name=NO15G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MAKSSTVTDATRSTDGLVLLAQGAEARVFELPSFLGGRPAIVKERFAKSY
RLPVLDSKLTKQRTVGEVRCMLRCAKAGVHAPCVYMVDAQASRIYMEKIE
GRTLKAFLRDEYDEATRTYTSVAHALVRELGTAVARIHNAEMVHGDLTTS
NFLVVGKDDCEGEGQVLPLHKLVAIDFGLGFLQPLPEDKAVDLYVLERAF
VSTHPNSQGLVDLAMAAYERSSPSHRSALVLKKLEDVRRRGRKRDMFG*
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mRNA from alignment at chr15:665594..666340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02410.1 ID=NO15G02410.1|Name=NO15G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp|location=Sequence derived from alignment at chr15:665594..666340+ (Nannochloropsis oceanica)
ATGGCTAAGTCTTCCACAGTCACCGACGCTACCCGCAGCACGGACGGTCT
TGTCTTGCTGGCTCAAGGTGCCGAGGCCCGGGTTTTTGAGCTGCCATCGT
TCTTGGGAGGCCGCCCCGCCATAGTCAAGGAGCGATTTGCCAAGTCCTAT
CGCCTTCCCGTGCTCGACTCCAAGCTGACCAAGCAACGCACCGTGGGTGA
AGTCAGATGCATGCTGCGGTGCGCTAAAGCAGGGGTACATGCGCCGTGCG
TGTACATGGTGGACGCGCAGGCCTCACGGATTTACATGGAAAAGATTGAG
GGGCGGACACTCAAGGCATTCCTGAGAGATGAGTACGATGAAGCCACGAG
AACCTACACTTCCGTAGCCCACGCCTTGGTCAGGGAGCTTGGCACGGCAG
TGGCACGAATTCACAATGCCGAGATGGTACACGGGGACTTGACCACGTCC
AACTTTCTAGTGGTGGGCAAAGACGACTGTGAAGGGGAAGGGCAAGTCTT
ACCCCTGCACAAGCTCGTGGCGATCGACTTTGGCCTGGGGTTTTTGCAGC
CTTTGCCGGAAGACAAGGCCGTGGACCTTTATGTTTTGGAACGGGCTTTT
GTCTCGACGCATCCCAATTCACAAGGATTGGTCGATCTGGCGATGGCAGC
GTATGAGCGGAGTTCTCCTTCACATCGCTCGGCCTTGGTGCTTAAAAAGC
TGGAGGACGTACGACGGCGGGGACGCAAACGAGACATGTTTGGATAG
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Coding sequence (CDS) from alignment at chr15:665594..666340+

>NO15G02410.1 ID=NO15G02410.1|Name=NO15G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr15:665594..666340+ (Nannochloropsis oceanica)
ATGGCTAAGTCTTCCACAGTCACCGACGCTACCCGCAGCACGGACGGTCT
TGTCTTGCTGGCTCAAGGTGCCGAGGCCCGGGTTTTTGAGCTGCCATCGT
TCTTGGGAGGCCGCCCCGCCATAGTCAAGGAGCGATTTGCCAAGTCCTAT
CGCCTTCCCGTGCTCGACTCCAAGCTGACCAAGCAACGCACCGTGGGTGA
AGTCAGATGCATGCTGCGGTGCGCTAAAGCAGGGGTACATGCGCCGTGCG
TGTACATGGTGGACGCGCAGGCCTCACGGATTTACATGGAAAAGATTGAG
GGGCGGACACTCAAGGCATTCCTGAGAGATGAGTACGATGAAGCCACGAG
AACCTACACTTCCGTAGCCCACGCCTTGGTCAGGGAGCTTGGCACGGCAG
TGGCACGAATTCACAATGCCGAGATGGTACACGGGGACTTGACCACGTCC
AACTTTCTAGTGGTGGGCAAAGACGACTGTGAAGGGGAAGGGCAAGTCTT
ACCCCTGCACAAGCTCGTGGCGATCGACTTTGGCCTGGGGTTTTTGCAGC
CTTTGCCGGAAGACAAGGCCGTGGACCTTTATGTTTTGGAACGGGCTTTT
GTCTCGACGCATCCCAATTCACAAGGATTGGTCGATCTGGCGATGGCAGC
GTATGAGCGGAGTTCTCCTTCACATCGCTCGGCCTTGGTGCTTAAAAAGC
TGGAGGACGTACGACGGCGGGGACGCAAACGAGACATGTTTGGATAG
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Synonyms
Publications