NO15G02400.1, NO15G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02400.1
Unique NameNO15G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr15:663384..664217 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:663384..664217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO15G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02400NO15G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02400.1NO15G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02400.1.cds1NO15G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02400.1.cds2NO15G02400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02400.1 ID=NO15G02400.1|Name=NO15G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ATGAGCACGGAGGACGGTGCCTCCGAAAGCAAAAGGATGAAGCGGCGGGC
CGTCAACAAAAAAGGGTGGAACCCGCATGCTACTCCTCCGCGAAACAAGC
AGCTCAAAGAAGAGGAGGGACAAGAGGAGGACAGCCCGACTTTGCCTTCC
TTTCGTAAGACATCTGTGCAGGCACTGCAAGAGCTCTTCGTCAAGGCCAA
AGCAAACATCAACGGAGAAAGTGGAGTGCAGCAGCCGGCAGACTATCTGC
GTCGATTTGCCGAGGAGGTGGAGGAAGCAATCTTTGAGCAGTACGGGAAC
ATTTCCAACCCGTACGAATCAACACGCGCATACGGCAATCAAATCCGTAC
TCTAAGGTACAATATTCTCCAAAATAAGGACTTGCAAGGTCGCATAATAA
CAGGCGGCCTCAATGCTATGACCATTGCACGTTTGACCCCCGAAGAAATG
CTGACGACGACCGCGCGGCTGGAGCAGCATGAAAAAGAGGCCAAGGCGTA
TGACATGCAACGACTGGATCGGCATCTTGCACCGCAGGTGGAAGAAGAGC
TGGCGGCCCGTATGGCAGGAGGAGGATTGACATGTCCCGTGTGCGACTCG
GATGAGGTTGGTATGATGCATCGTCACAACGCTTTGGAAGAAGAACAGCA
ACGACAGGTGGAGATGGCTTGTAATGCTTGTGGCGCAACTATGGCACAGG
AGGAGTAA
back to top

protein sequence of NO15G02400.1

>NO15G02400.1-protein ID=NO15G02400.1-protein|Name=NO15G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MSTEDGASESKRMKRRAVNKKGWNPHATPPRNKQLKEEEGQEEDSPTLPS
FRKTSVQALQELFVKAKANINGESGVQQPADYLRRFAEEVEEAIFEQYGN
ISNPYESTRAYGNQIRTLRYNILQNKDLQGRIITGGLNAMTIARLTPEEM
LTTTARLEQHEKEAKAYDMQRLDRHLAPQVEEELAARMAGGGLTCPVCDS
DEVGMMHRHNALEEEQQRQVEMACNACGATMAQEE*
back to top

mRNA from alignment at chr15:663384..664217+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02400.1 ID=NO15G02400.1|Name=NO15G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=834bp|location=Sequence derived from alignment at chr15:663384..664217+ (Nannochloropsis oceanica)
ATGAGCACGGAGGACGGTGCCTCCGAAAGCAAAAGGATGAAGCGGCGGGC
CGTCAACAAAAAAGGGTGGAACCCGCATGCTACTCCTCCGCGAAACAAGC
AGCTCAAAGAAGAGGAGGGACAAGAGGAGGACAGCCCGACTTTGCCTTCC
TTTCGTAAGACATCTGTGCAGGCACTGCAAGAGCTCTTCGTCAAGGCCAA
AGCAAACATCAACGGAGAAAGTGGAGTGCAGCAGCCGGCAGACTATCTGC
GTCGATTTGCCGAGGAGGTGGAGGAAGCAATCTTTGAGCAGTACGGGAAC
ATTTCCAACCCGTACGAATCAACACGCGCATACGGCAATCAAATCCGTAC
TCTAAGGTACAATATTCTCCAAAATAAGGACTTGCAAGGTCGCATAATAA
CAGGCGGCCTCAATGCTATGACCATTGCACGTTTGACCCCCGAAGAAATG
CTGACGACGACCGCGCGGCTGGAGCAGCATGAAAAAGAGGCCAAGGCGTA
TGACATGCAACGACTGGATCGGCATCTTGCACCGCAGGTGGGGATAGGGA
ATACATGAGGAAAGAAATCGACATTTTTAAGAGGATCATTTATAATGTTT
CATTGTCAGTATATATATCCCATCCAGTCAGGTGATATCCCATCCAATCC
CGCACCCACACAGGTGGAAGAAGAGCTGGCGGCCCGTATGGCAGGAGGAG
GATTGACATGTCCCGTGTGCGACTCGGATGAGGTTGGTATGATGCATCGT
CACAACGCTTTGGAAGAAGAACAGCAACGACAGGTGGAGATGGCTTGTAA
TGCTTGTGGCGCAACTATGGCACAGGAGGAGTAA
back to top

Coding sequence (CDS) from alignment at chr15:663384..664217+

>NO15G02400.1 ID=NO15G02400.1|Name=NO15G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr15:663384..664217+ (Nannochloropsis oceanica)
ATGAGCACGGAGGACGGTGCCTCCGAAAGCAAAAGGATGAAGCGGCGGGC
CGTCAACAAAAAAGGGTGGAACCCGCATGCTACTCCTCCGCGAAACAAGC
AGCTCAAAGAAGAGGAGGGACAAGAGGAGGACAGCCCGACTTTGCCTTCC
TTTCGTAAGACATCTGTGCAGGCACTGCAAGAGCTCTTCGTCAAGGCCAA
AGCAAACATCAACGGAGAAAGTGGAGTGCAGCAGCCGGCAGACTATCTGC
GTCGATTTGCCGAGGAGGTGGAGGAAGCAATCTTTGAGCAGTACGGGAAC
ATTTCCAACCCGTACGAATCAACACGCGCATACGGCAATCAAATCCGTAC
TCTAAGGTACAATATTCTCCAAAATAAGGACTTGCAAGGTCGCATAATAA
CAGGCGGCCTCAATGCTATGACCATTGCACGTTTGACCCCCGAAGAAATG
CTGACGACGACCGCGCGGCTGGAGCAGCATGAAAAAGAGGCCAAGGCGTA
TGACATGCAACGACTGGATCGGCATCTTGCACCGCAGGTGGAAGAAGAGC
TGGCGGCCCGTATGGCAGGAGGAGGATTGACATGTCCCGTGTGCGACTCG
GATGAGGTTGGTATGATGCATCGTCACAACGCTTTGGAAGAAGAACAGCA
ACGACAGGTGGAGATGGCTTGTAATGCTTGTGGCGCAACTATGGCACAGG
AGGAGTAA
back to top
Synonyms
Publications