NO15G02170.2, NO15G02170.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02170.2
Unique NameNO15G02170.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2045
Alignment locationchr15:608255..610438 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:608255..610438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02170.2 vs.
Match: EWM22362.1 (immutans protein [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.800e-81
Identity = 182/304 (59.87%), Postives = 209/304 (68.75%), Query Frame = 0 
Query:   45 SSSSSSVAAFLRPPPLTNPCARTGTQSGSSSSSSSIV------MSASSGNKNDKNKKANHNK--------TCGRFNQLPIFKSSVTNQVEARSTTATNINITPPHVSSGSSSDRSSSNLIKNIPIPSPSSKNTAASSYVSGGKVPGYVADANKAIVDTIKGALFALYGERHYARFHALETIARVPYFAYTSVLHLYETLGWRRRSDLMKVHFAESWNELHHLLIMEELGGNKEWGDRVVAVHLAFFYYWVAIALYMASPETAYNLNEQVERHAFDTYDKFLETHEEELKSLPPPKVAKEYYQTG 335
            SS+SSS+ A   P P           S S S   SIV      +SA+  +++ + +K    K        + GR ++LPIFKS   NQ                        D S S         S  +K +AASSYV GG+VP  VA+ANKAIV +IK AL A+YG+RHYARFHALETIARVPYFAYTSVLHLYETLGWRRR+DLMK+HFAESWNELHHLLIMEELGGN EW DR+VAVHLAFFYYW+AIALYMASPETAYNLNE VERHA+DTYDKFLETHEEELK+LPPP++AKEYYQTG
Sbjct:   47 SSASSSLGALRSPGP-----------SASLSKCPSIVEHREGVVSAAGKDEDSQERKPQGLKMKNNGGSTSKGRLHELPIFKSMAANQ------------------DGELQRDNSDS---------SEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTG 312
The following BLAST results are available for this feature:
BLAST of NO15G02170.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22362.11.800e-8159.87immutans protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02170NO15G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02170.2NO15G02170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02170.2.cds1NO15G02170.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02170.2.cds2NO15G02170.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02170.2 ID=NO15G02170.2|Name=NO15G02170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp
GGAAAAGCCAGAGCTCGTACAAAACACGCTCCATGGACGCAACGATCCCA
CACCTAGAAGACACGCATCCGTTCCATCTCTGCCTTTTTAGAACGCAGGT
GGGACTATCTGCCGCGGGGAAGGCAATGATTATGATCTGGTACCCCCGGT
AAACTGAGTCCTCATCTTTTGACTTTTGAACGACTCAAATTTCAAAGGCT
TTAACTCGTCTACCACCGAAGGCCGAGGGGGTCCACACATGGCGTTCGTC
ACATCCCATGTTTTGTTTGAAGAGCGCGGCGTTGGGGAGTAGGAACAAAT
TGCAAACGCATGTGCTGCTGTCCTGCTGTACTGCTGTCTGTCTCATTCTA
CCAACGACGCAAACACCTCGCTCTTACCTTTGTTCATATCACCAAGTAAA
TTCAGGGACCTGTTCTAGGCTATTCTCCTCCTGTCGACTTGCTGTGAGCT
CAACTACAACACCCTCGTCGCCACACCTGTTTCCCACAAACCATGCACAA
CCACAACCACCACCAGCAGCAGCGGCGAGCTGCTAGTGCGTCAACTCTCT
GCCGTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGGGACGATTT
GTAGTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTGGCTGC
CTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCACCGGCACTC
AAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCGCCAGCAGC
GGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAAACCTGTGG
CCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAACCAAGTCG
AGGCCCGTTCCACCACCGCCACTAACATCAATATCACACCTCCTCACGTC
AGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATCAAGAACAT
CCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTCCTACGTCT
CCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGGCTATCGTT
GATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGGCATTATGC
TCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTTTGCTTACA
CCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGCGGTCGGAT
TTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCATCACTTGCT
GATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAGAGTGGTTG
CGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCATTGTATATG
GCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTGGAGAGGCATGC
TTTCGATACGTACGACAAGTTTCTCGAGACGCACGAGGAGGAATTGAAGA
GCCTGCCCCCGCCCAAGGTGGCTAAGGAGTACTATCAGACAGGTATTTGC
GTGTGGGCTAAGGGAATGTACCTGATCAGTTTGTGAGCCTGTGCTCGCAA
GGAAATCAGAAGCTGCCTACGCCTAACTCCTCCTCCATCGGTCTACTTAC
CCCCTTTCCTTCCCTCCCCCCTTCCCTTCTTCCGACCACAGGCGACCTCT
ATATGTTTGATGAGTTCCACACCACCACCCCTGCCGAGCGGCGTCGGCCC
AAAATCGACACGTTGTACGATGTTTTTGTCAACATCCGCAACGATGAACG
CGAGCATTTCATGACCATGGCGGAGATGCAAAAGGTCGGGGGGGACTTAG
GCATCACCTCACCGAACACCTTGAACCCACTTAACAACCCGAAGAGGGGA
ATGTAAATGACAAAAGACATTAGGGGAAACGAAAGACGGTGAAGGTTCGG
TAGAAGTAGAGGAAGGGAGGGAGGGAGAGCGGGCGGGGAGCGCTTCCGTT
TGTCCTAGCATGTACAATTTTTGATTTAGGCCAGCCAGGGCGCAGCATCT
CGAGCGAACTATTGGTAGTATACCAAAGAAACAATGCGAGCGAGA
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protein sequence of NO15G02170.2

>NO15G02170.2-protein ID=NO15G02170.2-protein|Name=NO15G02170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MHNHNHHQQQRRAASASTLCRILVHLLLASAAAGRFVVPSSSSSSSSSSS
VAAFLRPPPLTNPCARTGTQSGSSSSSSSIVMSASSGNKNDKNKKANHNK
TCGRFNQLPIFKSSVTNQVEARSTTATNINITPPHVSSGSSSDRSSSNLI
KNIPIPSPSSKNTAASSYVSGGKVPGYVADANKAIVDTIKGALFALYGER
HYARFHALETIARVPYFAYTSVLHLYETLGWRRRSDLMKVHFAESWNELH
HLLIMEELGGNKEWGDRVVAVHLAFFYYWVAIALYMASPETAYNLNEQVE
RHAFDTYDKFLETHEEELKSLPPPKVAKEYYQTGICVWAKGMYLISL*
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mRNA from alignment at chr15:608255..610438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02170.2 ID=NO15G02170.2|Name=NO15G02170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp|location=Sequence derived from alignment at chr15:608255..610438- (Nannochloropsis oceanica)
GGAAAAGCCAGAGCTCGTACAAAACACGCTCCATGGACGCAACGATCCCA
CACCTAGAAGACACGCATCCGTTCCATCTCTGCCTTTTTAGAACGCAGGT
GGGACTATCTGCCGCGGGGAAGGCAATGATTATGATCTGGTACCCCCGGT
AAACTGAGTCCTCATCTTTTGACTTTTGAACGACTCAAATTTCAAAGGCT
TTAACTCGTCTACCACCGAAGGCCGAGGGGGTCCACACATGGCGTTCGTC
ACATCCCATGTTTTGTTTGAAGAGCGCGGCGTTGGGGAGTAGGAACAAAT
TGCAAACGCATGTGCTGCTGTCCTGCTGTACTGCTGTCTGTCTCATTCTA
CCAACGACGCAAACACCTCGCTCTTACCTTTGTTCATATCACCAAGTAAA
TTCAGGGACCTGTTCTAGGCTATTCTCCTCCTGTCGACTTGCTGTGAGCT
CAACTACAACACCCTCGTCGCCACACCTGTTTCCCACAAACCATGCACAA
CCACAACCACCACCAGCAGCAGCGGCGAGCTGCTAGTGCGTCAACTCTCT
GCCGTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGGGACGATTT
GTAGTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTGGCTGC
CTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCACCGGCACTC
AAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCGCCAGCAGC
GGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAAACCTGTGG
CCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAACCAAGTCG
AGGCCCGTTCCACCACCGCCACTAACATCAATATCACACCTCCTCACGTC
AGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATCAAGAACAT
CCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTCCTACGTCT
CCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGGCTATCGTT
GATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGGCATTATGC
TCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTTTGCTTACA
CCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGCGGTCGGAT
TTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCATCACTTGCT
GATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAGAGTGGTTG
CGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCATTGTATATG
GCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTACGGATAGGGGA
AGGGAGGGATGACGTTGAGGATTAGAAGGCATGGCTATGCATTGACATAT
TATGATCCACTTTTACTAAAACGCCTTTTCTTTATTACCCCTGTCTTTCC
TCCCTCTTTCCCTCGCTCGTTGTAGGTGGAGAGGCATGCTTTCGATACGT
ACGACAAGTTTCTCGAGACGCACGAGGAGGAATTGAAGAGCCTGCCCCCG
CCCAAGGTGGCTAAGGAGTACTATCAGACAGGTATTTGCGTGTGGGCTAA
GGGAATGTACCTGATCAGTTTGTGAGCCTGTGCTCGCAAGGAAATCAGAA
GCTGCCTACGCCTAACTCCTCCTCCATCGGTCTACTTACCCCCTTTCCTT
CCCTCCCCCCTTCCCTTCTTCCGACCACAGGCGACCTCTATATGTTTGAT
GAGTTCCACACCACCACCCCTGCCGAGCGGCGTCGGCCCAAAATCGACAC
GTTGTACGATGTTTTTGTCAACATCCGCAACGATGAACGCGAGCATTTCA
TGACCATGGCGGAGATGCAAAAGGTCGGGGGGGACTTAGGCATCACCTCA
CCGAACACCTTGAACCCACTTAACAACCCGAAGAGGGGAATGTAAATGAC
AAAAGACATTAGGGGAAACGAAAGACGGTGAAGGTTCGGTAGAAGTAGAG
GAAGGGAGGGAGGGAGAGCGGGCGGGGAGCGCTTCCGTTTGTCCTAGCAT
GTACAATTTTTGATTTAGGCCAGCCAGGGCGCAGCATCTCGAGCGAACTA
TTGGTAGTATACCAAAGAAACAATGCGAGCGAGA
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Coding sequence (CDS) from alignment at chr15:608255..610438-

>NO15G02170.2 ID=NO15G02170.2|Name=NO15G02170.2|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr15:608255..610438- (Nannochloropsis oceanica)
ATGCACAACCACAACCACCACCAGCAGCAGCGGCGAGCTGCTAGTGCGTC
AACTCTCTGCCGTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGG
GACGATTTGTAGTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
GTGGCTGCCTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCAC
CGGCACTCAAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCG
CCAGCAGCGGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAA
ACCTGTGGCCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAA
CCAAGTCGAGGCCCGTTCCACCACCGCCACTAACATCAATATCACACCTC
CTCACGTCAGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATC
AAGAACATCCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTC
CTACGTCTCCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGG
CTATCGTTGATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGG
CATTATGCTCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTT
TGCTTACACCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGC
GGTCGGATTTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCAT
CACTTGCTGATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAG
AGTGGTTGCGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCAT
TGTATATGGCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTGGAG
AGGCATGCTTTCGATACGTACGACAAGTTTCTCGAGACGCACGAGGAGGA
ATTGAAGAGCCTGCCCCCGCCCAAGGTGGCTAAGGAGTACTATCAGACAG
GTATTTGCGTGTGGGCTAAGGGAATGTACCTGATCAGTTTGTGA
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Synonyms
Publications