NO15G02170.1, NO15G02170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G02170.1
Unique Name	NO15G02170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1896
Alignment location	chr15:608255..610438 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:608255..610438 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO15G02170.1 vs.
Match: EWM22362.1 (immutans protein [Nannochloropsis gaditana])

HSP 1 Score: 431.8 bits (1109), Expect = 2.400e-117
Identity = 239/373 (64.08%), Postives = 271/373 (72.65%), Query Frame = 0

Query:   45 SSSSSSVAAFLRPPPLTNPCARTGTQSGSSSSSSSIV------MSASSGNKNDKNKKANHNK--------TCGRFNQLPIFKSSVTNQVEARSTTATNINITPPHVSSGSSSDRSSSNLIKNIPIPSPSSKNTAASSYVSGGKVPGYVADANKAIVDTIKGALFALYGERHYARFHALETIARVPYFAYTSVLHLYETLGWRRRSDLMKVHFAESWNELHHLLIMEELGGNKEWGDRVVAVHLAFFYYWVAIALYMASPETAYNLNEQVERHAFDTYDKFLETHEEELKSLPPPKVAKEYYQTGDLYMFDEFHTTTPAERRRPKIDTLYDVFVNIRNDEREHFMTMAEMQKVGGDLGITSPNTLNPLNNPKRG 404
            SS+SSS+ A   P P           S S S   SIV      +SA+  +++ + +K    K        + GR ++LPIFKS   NQ                        D S S         S  +K +AASSYV GG+VP  VA+ANKAIV +IK AL A+YG+RHYARFHALETIARVPYFAYTSVLHLYETLGWRRR+DLMK+HFAESWNELHHLLIMEELGGN EW DR+VAVHLAFFYYW+AIALYMASPETAYNLNE VERHA+DTYDKFLETHEEELK+LPPP++AKEYYQTGDLYMFDEFHT +PAERRRPKI++LYDVFVNIRNDEREHFMTMA MQ   GD GI SPNTL+PLNNP+RG
Sbjct:   47 SSASSSLGALRSPGP-----------SASLSKCPSIVEHREGVVSAAGKDEDSQERKPQGLKMKNNGGSTSKGRLHELPIFKSMAANQ------------------DGELQRDNSDS---------SEQAKVSAASSYVPGGRVPAVVAEANKAIVSSIKDALVAVYGDRHYARFHALETIARVPYFAYTSVLHLYETLGWRRRADLMKIHFAESWNELHHLLIMEELGGNAEWLDRLVAVHLAFFYYWMAIALYMASPETAYNLNEMVERHAYDTYDKFLETHEEELKALPPPQIAKEYYQTGDLYMFDEFHTNSPAERRRPKIESLYDVFVNIRNDEREHFMTMAVMQGHSGDAGIVSPNTLDPLNNPRRG 381

The following BLAST results are available for this feature:

BLAST of NO15G02170.1 vs.

BLAST of NO15G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22362.1	2.400e-117	64.08	immutans protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G02170	NO15G02170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G02170.1	NO15G02170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G02170.1.cds1	NO15G02170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G02170.1.cds2	NO15G02170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G02170.1.cds3	NO15G02170.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:608255..610438-
coding sequence from alignment at chr15:608255..610438-

mRNA sequence

>NO15G02170.1 ID=NO15G02170.1|Name=NO15G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp
GGAAAAGCCAGAGCTCGTACAAAACACGCTCCATGGACGCAACGATCCCA
CACCTAGAAGACACGCATCCGTTCCATCTCTGCCTTTTTAGAACGCAGGT
GGGACTATCTGCCGCGGGGAAGGCAATGATTATGATCTGGTACCCCCGGT
AAACTGAGTCCTCATCTTTTGACTTTTGAACGACTCAAATTTCAAAGGCT
TTAACTCGTCTACCACCGAAGGCCGAGGGGGTCCACACATGGCGTTCGTC
ACATCCCATGTTTTGTTTGAAGAGCGCGGCGTTGGGGAGTAGGAACAAAT
TGCAAACGCATGTGCTGCTGTCCTGCTGTACTGCTGTCTGTCTCATTCTA
CCAACGACGCAAACACCTCGCTCTTACCTTTGTTCATATCACCAAGTAAA
TTCAGGGACCTGTTCTAGGCTATTCTCCTCCTGTCGACTTGCTGTGAGCT
CAACTACAACACCCTCGTCGCCACACCTGTTTCCCACAAACCATGCACAA
CCACAACCACCACCAGCAGCAGCGGCGAGCTGCTAGTGCGTCAACTCTCT
GCCGTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGGGACGATTT
GTAGTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTGGCTGC
CTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCACCGGCACTC
AAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCGCCAGCAGC
GGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAAACCTGTGG
CCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAACCAAGTCG
AGGCCCGTTCCACCACCGCCACTAACATCAATATCACACCTCCTCACGTC
AGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATCAAGAACAT
CCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTCCTACGTCT
CCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGGCTATCGTT
GATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGGCATTATGC
TCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTTTGCTTACA
CCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGCGGTCGGAT
TTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCATCACTTGCT
GATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAGAGTGGTTG
CGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCATTGTATATG
GCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTGGAGAGGCATGC
TTTCGATACGTACGACAAGTTTCTCGAGACGCACGAGGAGGAATTGAAGA
GCCTGCCCCCGCCCAAGGTGGCTAAGGAGTACTATCAGACAGGCGACCTC
TATATGTTTGATGAGTTCCACACCACCACCCCTGCCGAGCGGCGTCGGCC
CAAAATCGACACGTTGTACGATGTTTTTGTCAACATCCGCAACGATGAAC
GCGAGCATTTCATGACCATGGCGGAGATGCAAAAGGTCGGGGGGGACTTA
GGCATCACCTCACCGAACACCTTGAACCCACTTAACAACCCGAAGAGGGG
AATGTAAATGACAAAAGACATTAGGGGAAACGAAAGACGGTGAAGGTTCG
GTAGAAGTAGAGGAAGGGAGGGAGGGAGAGCGGGCGGGGAGCGCTTCCGT
TTGTCCTAGCATGTACAATTTTTGATTTAGGCCAGCCAGGGCGCAGCATC
TCGAGCGAACTATTGGTAGTATACCAAAGAAACAATGCGAGCGAGA

protein sequence of NO15G02170.1

>NO15G02170.1-protein ID=NO15G02170.1-protein|Name=NO15G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MHNHNHHQQQRRAASASTLCRILVHLLLASAAAGRFVVPSSSSSSSSSSS
VAAFLRPPPLTNPCARTGTQSGSSSSSSSIVMSASSGNKNDKNKKANHNK
TCGRFNQLPIFKSSVTNQVEARSTTATNINITPPHVSSGSSSDRSSSNLI
KNIPIPSPSSKNTAASSYVSGGKVPGYVADANKAIVDTIKGALFALYGER
HYARFHALETIARVPYFAYTSVLHLYETLGWRRRSDLMKVHFAESWNELH
HLLIMEELGGNKEWGDRVVAVHLAFFYYWVAIALYMASPETAYNLNEQVE
RHAFDTYDKFLETHEEELKSLPPPKVAKEYYQTGDLYMFDEFHTTTPAER
RRPKIDTLYDVFVNIRNDEREHFMTMAEMQKVGGDLGITSPNTLNPLNNP
KRGM*

mRNA from alignment at chr15:608255..610438-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G02170.1 ID=NO15G02170.1|Name=NO15G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp|location=Sequence derived from alignment at chr15:608255..610438- (Nannochloropsis oceanica)
GGAAAAGCCAGAGCTCGTACAAAACACGCTCCATGGACGCAACGATCCCA
CACCTAGAAGACACGCATCCGTTCCATCTCTGCCTTTTTAGAACGCAGGT
GGGACTATCTGCCGCGGGGAAGGCAATGATTATGATCTGGTACCCCCGGT
AAACTGAGTCCTCATCTTTTGACTTTTGAACGACTCAAATTTCAAAGGCT
TTAACTCGTCTACCACCGAAGGCCGAGGGGGTCCACACATGGCGTTCGTC
ACATCCCATGTTTTGTTTGAAGAGCGCGGCGTTGGGGAGTAGGAACAAAT
TGCAAACGCATGTGCTGCTGTCCTGCTGTACTGCTGTCTGTCTCATTCTA
CCAACGACGCAAACACCTCGCTCTTACCTTTGTTCATATCACCAAGTAAA
TTCAGGGACCTGTTCTAGGCTATTCTCCTCCTGTCGACTTGCTGTGAGCT
CAACTACAACACCCTCGTCGCCACACCTGTTTCCCACAAACCATGCACAA
CCACAACCACCACCAGCAGCAGCGGCGAGCTGCTAGTGCGTCAACTCTCT
GCCGTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGGGACGATTT
GTAGTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTGGCTGC
CTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCACCGGCACTC
AAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCGCCAGCAGC
GGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAAACCTGTGG
CCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAACCAAGTCG
AGGCCCGTTCCACCACCGCCACTAACATCAATATCACACCTCCTCACGTC
AGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATCAAGAACAT
CCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTCCTACGTCT
CCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGGCTATCGTT
GATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGGCATTATGC
TCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTTTGCTTACA
CCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGCGGTCGGAT
TTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCATCACTTGCT
GATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAGAGTGGTTG
CGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCATTGTATATG
GCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTACGGATAGGGGA
AGGGAGGGATGACGTTGAGGATTAGAAGGCATGGCTATGCATTGACATAT
TATGATCCACTTTTACTAAAACGCCTTTTCTTTATTACCCCTGTCTTTCC
TCCCTCTTTCCCTCGCTCGTTGTAGGTGGAGAGGCATGCTTTCGATACGT
ACGACAAGTTTCTCGAGACGCACGAGGAGGAATTGAAGAGCCTGCCCCCG
CCCAAGGTGGCTAAGGAGTACTATCAGACAGGTATTTGCGTGTGGGCTAA
GGGAATGTACCTGATCAGTTTGTGAGCCTGTGCTCGCAAGGAAATCAGAA
GCTGCCTACGCCTAACTCCTCCTCCATCGGTCTACTTACCCCCTTTCCTT
CCCTCCCCCCTTCCCTTCTTCCGACCACAGGCGACCTCTATATGTTTGAT
GAGTTCCACACCACCACCCCTGCCGAGCGGCGTCGGCCCAAAATCGACAC
GTTGTACGATGTTTTTGTCAACATCCGCAACGATGAACGCGAGCATTTCA
TGACCATGGCGGAGATGCAAAAGGTCGGGGGGGACTTAGGCATCACCTCA
CCGAACACCTTGAACCCACTTAACAACCCGAAGAGGGGAATGTAAATGAC
AAAAGACATTAGGGGAAACGAAAGACGGTGAAGGTTCGGTAGAAGTAGAG
GAAGGGAGGGAGGGAGAGCGGGCGGGGAGCGCTTCCGTTTGTCCTAGCAT
GTACAATTTTTGATTTAGGCCAGCCAGGGCGCAGCATCTCGAGCGAACTA
TTGGTAGTATACCAAAGAAACAATGCGAGCGAGA

Coding sequence (CDS) from alignment at chr15:608255..610438-

>NO15G02170.1 ID=NO15G02170.1|Name=NO15G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr15:608255..610438- (Nannochloropsis oceanica)
ATGCACAACCACAACCACCACCAGCAGCAGCGGCGAGCTGCTAGTGCGTC
AACTCTCTGCCGTATCCTCGTTCACCTTCTCCTGGCCTCCGCGGCCGCGG
GACGATTTGTAGTGCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
GTGGCTGCCTTCCTACGGCCTCCACCACTTACCAATCCTTGTGCACGCAC
CGGCACTCAAAGTGGCAGCAGCAGCAGTAGCAGCAGCATCGTCATGTCCG
CCAGCAGCGGCAACAAGAACGACAAAAATAAGAAGGCCAATCACAACAAA
ACCTGTGGCCGCTTCAACCAGCTCCCCATTTTCAAGAGCAGCGTCACTAA
CCAAGTCGAGGCCCGTTCCACCACCGCCACTAACATCAATATCACACCTC
CTCACGTCAGTAGCGGTAGCAGCAGCGACAGGAGTAGTAGCAACCTGATC
AAGAACATCCCAATTCCTTCTCCCAGCAGCAAGAATACCGCTGCCTCCTC
CTACGTCTCCGGTGGAAAGGTCCCTGGCTATGTCGCAGATGCCAACAAGG
CTATCGTTGATACGATTAAAGGTGCTTTGTTCGCTTTGTATGGTGAGAGG
CATTATGCTCGTTTTCATGCCTTGGAGACCATTGCACGTGTTCCGTATTT
TGCTTACACCTCAGTGTTGCATCTGTATGAGACATTGGGGTGGAGGAGGC
GGTCGGATTTAATGAAGGTCCACTTCGCCGAGTCCTGGAACGAGTTGCAT
CACTTGCTGATTATGGAAGAGCTGGGTGGGAATAAGGAATGGGGGGACAG
AGTGGTTGCGGTGCATCTGGCCTTCTTTTATTATTGGGTGGCGATTGCAT
TGTATATGGCCTCGCCCGAGACGGCGTACAACCTGAACGAGCAGGTGGAG
AGGCATGCTTTCGATACGTACGACAAGTTTCTCGAGACGCACGAGGAGGA
ATTGAAGAGCCTGCCCCCGCCCAAGGTGGCTAAGGAGTACTATCAGACAG
GCGACCTCTATATGTTTGATGAGTTCCACACCACCACCCCTGCCGAGCGG
CGTCGGCCCAAAATCGACACGTTGTACGATGTTTTTGTCAACATCCGCAA
CGATGAACGCGAGCATTTCATGACCATGGCGGAGATGCAAAAGGTCGGGG
GGGACTTAGGCATCACCTCACCGAACACCTTGAACCCACTTAACAACCCG
AAGAGGGGAATGTAA

Synonyms

Publications