NO15G02110.1, NO15G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02110.1
Unique NameNO15G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2140
Alignment locationchr15:593891..596132 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:593891..596132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02110.1 vs.
Match: EWM21339.1 (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 202.6 bits (514), Expect = 3.400e-48
Identity = 128/427 (29.98%), Postives = 204/427 (47.78%), Query Frame = 0 
Query:  162 VYRIRGQFPKVRYFSVQTYTFLRQPIDGIADYHMTPSTGINPFLNRVNSSDDNGHYEVYFTANGDHGYPNELRAYQPDRGLTTLRGGKNTSFNLFTMAIRFYASDPSNDQSVIWGRGPSLFGFVDPPTVEWRKHDNGAWQVIPQCSPTEQQCNTAILDSFMSFPQFLLPLRDIPGFICPVAEKDKINSDFYLWRAKLPQILDLYIGFKNSDVTYLYWCDIAARMGKDFVLKITGTLGSTPKGLYDEPLVSHPWEYDSRYISFHAVDLRPPIPSYSAIYDGDLWAKH-----GPGWNRQYTIISAEDESVAEACGLLDRSKDSFLAFSRADGNMSSRHVATPGIIYREILPRITRLKEGGKSPTDVAQQCGMETDLPDAVSSEDIASSSMGMGGHALKKPHNPQCDDPNFSRLVMQERYPEIAVYHCD 584
            VYRIRG+FP VRYFS   Y    Q I  + D  + PS+G NPF +   + D+ G YE+Y + +G  GYPNE+ A +PD           + + L    ++        D+S   G+    +G+VD P VE   H NG W +I +CS   Q     ++++         P     G  C   E       F L+  +   I+   +  +N++  Y++WC       KD++++ITG L  TP GL+D+  V+    YDSRY+SF + D  P  PSY  I+D D++  +     G  W+R Y +++  D ++A+ CGL +R++D  L  +R+       HV  P I+ R +LP       GG          G E    + V++ ++ +      G  L       CD    +++++QE YP + ++ CD
Sbjct:  158 VYRIRGKFPYVRYFSFTVYDASLQSISTLHDTDIRPSSGKNPFNDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALRPD---------STSPYALLAFRLQLLDPRAGEDRS---GKNRE-WGYVDMPLVEILNHRNGEWDIIRRCSDEFQARTEEVIENLDLTFNTWWPKNLQIGTECNATE-------FSLFDPEQNPIIRRGVAVRNANENYIFWCMPKEIGKKDYIIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFTSADAIPLYPSYETIHDRDIFNHYSTDPFGSDWDRMYNLVATSDVNLAKKCGLYNRAEDVLLQLTRSPTFTHLPHV--PAIVMRHLLP-------GG----------GKERRGTEGVANVNLRNECESPTGKLL-------CDPARSAKVLLQEFYPLVQIWTCD 538
The following BLAST results are available for this feature:
BLAST of NO15G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21339.13.400e-4829.98hypothetical protein Naga_100075g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02110NO15G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02110.1NO15G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02110.1.cds1NO15G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02110.1.cds2NO15G02110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02110.1 ID=NO15G02110.1|Name=NO15G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp
ATGTAAGATTTAGCGGTAACGTCCGAGGTTAGTGCAAGCAACGATGCCGC
AAAATGCGCAGCCACAAGGATTCCCTTGATCCACCTCCCCTGGAAACGGC
TTTCGCCGCGTTTGTGCTGCTCCTGCCGTGTGTGCTCGCGAAGCCTGGCC
CTCTCGGCTCCCCGCATGTGCTGAATTTGGCGGCAAAATGGAGTAACAAG
CGCCTCACACGCTACAACCATCAACATGCTTATGTGCCCTGCGATGGCAT
ACGATCATAAAAGTCATGCTTTCCTCCTAGCTCGGCCCACATGCCCCCTT
TCAATCGAGCCCCTCACGACACTGTCAACCGATTCGATGCGCATTAACCA
CAGCACAATAAAAGCACCACCAGCCGAGAGGACTGGCCAAAAAATGCGTC
CGATAATGGCAGCCATCCACATACTTGTGGCGATGCTTCTCGTTGTCTCC
AGCGCGAACAAGAAGGCAGCTCTCTATCATGCCAAAAAACTCCGTGAAAA
GGGGGCAGCTGTTGCCATTGAGGCTTCGGGATACGCCGAGGATGTGCATA
CATTCAAGGAGCTCGAGTCCAAGCTGTCCGGATGCCACCTCAAGGGGCCC
TGCGCCTGGCAGTTCAGCTTCACGCCCACTGACGTCAGTGTCATCGCACC
GGAGCCCCATGTCATTTACCACTACTCCTTGCACACCATGTTTGAGCATG
ACACGACCGTCTATCGCATCCGGGGCCAATTTCCCAAGGTACGCTATTTC
TCCGTGCAGACCTACACCTTCTTGCGGCAGCCCATCGACGGCATAGCCGA
CTACCACATGACGCCTTCCACTGGCATCAATCCCTTTCTTAATCGTGTGA
ATTCTTCAGATGATAACGGGCACTACGAGGTTTACTTCACAGCCAACGGC
GACCACGGTTACCCTAACGAGCTCCGCGCCTACCAACCAGACCGCGGCCT
GACGACGCTGCGCGGCGGGAAAAACACGTCCTTCAACCTCTTCACCATGG
CTATCCGTTTTTATGCCTCCGATCCAAGCAATGACCAGAGCGTGATCTGG
GGCCGGGGCCCGTCGCTGTTTGGGTTCGTGGATCCGCCCACAGTGGAGTG
GCGCAAGCACGACAACGGCGCATGGCAGGTTATTCCTCAGTGCTCCCCTA
CAGAACAGCAGTGCAACACTGCCATCTTGGACAGCTTCATGAGCTTTCCA
CAATTTCTTTTACCCCTTCGTGACATCCCTGGCTTCATTTGCCCCGTGGC
AGAGAAGGACAAGATTAACTCCGACTTTTACCTGTGGCGAGCGAAGCTCC
CCCAAATTCTTGATTTGTATATTGGCTTCAAAAATTCAGACGTCACTTAC
CTTTACTGGTGTGACATTGCCGCACGGATGGGCAAAGACTTTGTGCTCAA
GATCACCGGTACTCTGGGAAGCACGCCCAAGGGTTTGTATGACGAGCCGT
TGGTGTCGCACCCGTGGGAGTACGACTCCCGCTACATCTCCTTTCACGCC
GTGGACCTGCGCCCACCCATCCCTTCCTACTCGGCTATCTACGACGGAGA
CCTGTGGGCGAAACATGGCCCGGGCTGGAATCGGCAGTACACCATAATCT
CGGCAGAGGATGAGTCCGTGGCGGAAGCATGCGGACTTCTGGACCGTAGC
AAGGATTCGTTCCTCGCTTTCAGTCGCGCCGATGGGAATATGAGCTCTCG
GCATGTGGCGACTCCTGGCATTATCTACCGAGAAATTTTGCCGCGCATCA
CACGTTTGAAAGAAGGCGGCAAGTCTCCCACGGACGTGGCCCAGCAGTGT
GGCATGGAGACTGACCTCCCCGATGCCGTGTCGAGCGAAGACATTGCTAG
CTCTTCCATGGGCATGGGTGGCCACGCTCTGAAGAAGCCTCACAACCCCC
AGTGCGACGATCCCAACTTCTCCCGTCTCGTGATGCAAGAGCGCTATCCC
GAGATAGCCGTCTACCACTGCGATGTGAATTCTGGCGTTGCTACGCTACT
CGCGTAATTGCAGAGAAAATGTGTACTATAGGAAAAGACAAAAAGAATGG
CAAGAGAGTAAAAGCAACCGAGCATCCTACCACTTGAGTCAAACAATATC
AAAATATATTGCAATAACAAAGCCAAAGGTGAACATCTAT
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protein sequence of NO15G02110.1

>NO15G02110.1-protein ID=NO15G02110.1-protein|Name=NO15G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MLMCPAMAYDHKSHAFLLARPTCPLSIEPLTTLSTDSMRINHSTIKAPPA
ERTGQKMRPIMAAIHILVAMLLVVSSANKKAALYHAKKLREKGAAVAIEA
SGYAEDVHTFKELESKLSGCHLKGPCAWQFSFTPTDVSVIAPEPHVIYHY
SLHTMFEHDTTVYRIRGQFPKVRYFSVQTYTFLRQPIDGIADYHMTPSTG
INPFLNRVNSSDDNGHYEVYFTANGDHGYPNELRAYQPDRGLTTLRGGKN
TSFNLFTMAIRFYASDPSNDQSVIWGRGPSLFGFVDPPTVEWRKHDNGAW
QVIPQCSPTEQQCNTAILDSFMSFPQFLLPLRDIPGFICPVAEKDKINSD
FYLWRAKLPQILDLYIGFKNSDVTYLYWCDIAARMGKDFVLKITGTLGST
PKGLYDEPLVSHPWEYDSRYISFHAVDLRPPIPSYSAIYDGDLWAKHGPG
WNRQYTIISAEDESVAEACGLLDRSKDSFLAFSRADGNMSSRHVATPGII
YREILPRITRLKEGGKSPTDVAQQCGMETDLPDAVSSEDIASSSMGMGGH
ALKKPHNPQCDDPNFSRLVMQERYPEIAVYHCDVNSGVATLLA*
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mRNA from alignment at chr15:593891..596132+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02110.1 ID=NO15G02110.1|Name=NO15G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2242bp|location=Sequence derived from alignment at chr15:593891..596132+ (Nannochloropsis oceanica)
ATGTAAGATTTAGCGGTAACGTCCGAGGTTAGTGCAAGCAACGATGCCGC
AAAATGCGCAGCCACAAGGATTCCCTTGATCCACCTCCCCTGGAAACGGC
TTTCGCCGCGTTTGTGCTGCTCCTGCCGTGTGTGCTCGCGAAGCCTGGCC
CTCTCGGCTCCCCGCATGTGCTGAATTTGGCGGCAAAATGGAGTAACAAG
CGCCTCACACGCTACAACCATCAACATGCTTATGTGCCCTGCGATGGCAT
ACGATCATAAAAGTCATGCTTTCCTCCTAGCTCGGCCCACATGCCCCCTT
TCAATCGAGCCCCTCACGACACTGTCAACCGATTCGATGCGCATTAACCA
CAGCACAATAAAAGCACCACCAGCCGAGAGGACTGGCCAAAAAATGCGTC
CGATAATGGCAGCCATCCACATACTTGTGGCGATGCTTCTCGTTGTCTCC
AGGTAAGTCCACATCACGCTCCTCATGCTTTCGATCCTTCCACCAGCTGC
CTATTCTGGCCTCGCTCACTGTCGGCCACACGCATCCACACCACAACACC
ATAGCGCGAACAAGAAGGCAGCTCTCTATCATGCCAAAAAACTCCGTGAA
AAGGGGGCAGCTGTTGCCATTGAGGCTTCGGGATACGCCGAGGATGTGCA
TACATTCAAGGAGCTCGAGTCCAAGCTGTCCGGATGCCACCTCAAGGGGC
CCTGCGCCTGGCAGTTCAGCTTCACGCCCACTGACGTCAGTGTCATCGCA
CCGGAGCCCCATGTCATTTACCACTACTCCTTGCACACCATGTTTGAGCA
TGACACGACCGTCTATCGCATCCGGGGCCAATTTCCCAAGGTACGCTATT
TCTCCGTGCAGACCTACACCTTCTTGCGGCAGCCCATCGACGGCATAGCC
GACTACCACATGACGCCTTCCACTGGCATCAATCCCTTTCTTAATCGTGT
GAATTCTTCAGATGATAACGGGCACTACGAGGTTTACTTCACAGCCAACG
GCGACCACGGTTACCCTAACGAGCTCCGCGCCTACCAACCAGACCGCGGC
CTGACGACGCTGCGCGGCGGGAAAAACACGTCCTTCAACCTCTTCACCAT
GGCTATCCGTTTTTATGCCTCCGATCCAAGCAATGACCAGAGCGTGATCT
GGGGCCGGGGCCCGTCGCTGTTTGGGTTCGTGGATCCGCCCACAGTGGAG
TGGCGCAAGCACGACAACGGCGCATGGCAGGTTATTCCTCAGTGCTCCCC
TACAGAACAGCAGTGCAACACTGCCATCTTGGACAGCTTCATGAGCTTTC
CACAATTTCTTTTACCCCTTCGTGACATCCCTGGCTTCATTTGCCCCGTG
GCAGAGAAGGACAAGATTAACTCCGACTTTTACCTGTGGCGAGCGAAGCT
CCCCCAAATTCTTGATTTGTATATTGGCTTCAAAAATTCAGACGTCACTT
ACCTTTACTGGTGTGACATTGCCGCACGGATGGGCAAAGACTTTGTGCTC
AAGATCACCGGTACTCTGGGAAGCACGCCCAAGGGTTTGTATGACGAGCC
GTTGGTGTCGCACCCGTGGGAGTACGACTCCCGCTACATCTCCTTTCACG
CCGTGGACCTGCGCCCACCCATCCCTTCCTACTCGGCTATCTACGACGGA
GACCTGTGGGCGAAACATGGCCCGGGCTGGAATCGGCAGTACACCATAAT
CTCGGCAGAGGATGAGTCCGTGGCGGAAGCATGCGGACTTCTGGACCGTA
GCAAGGATTCGTTCCTCGCTTTCAGTCGCGCCGATGGGAATATGAGCTCT
CGGCATGTGGCGACTCCTGGCATTATCTACCGAGAAATTTTGCCGCGCAT
CACACGTTTGAAAGAAGGCGGCAAGTCTCCCACGGACGTGGCCCAGCAGT
GTGGCATGGAGACTGACCTCCCCGATGCCGTGTCGAGCGAAGACATTGCT
AGCTCTTCCATGGGCATGGGTGGCCACGCTCTGAAGAAGCCTCACAACCC
CCAGTGCGACGATCCCAACTTCTCCCGTCTCGTGATGCAAGAGCGCTATC
CCGAGATAGCCGTCTACCACTGCGATGTGAATTCTGGCGTTGCTACGCTA
CTCGCGTAATTGCAGAGAAAATGTGTACTATAGGAAAAGACAAAAAGAAT
GGCAAGAGAGTAAAAGCAACCGAGCATCCTACCACTTGAGTCAAACAATA
TCAAAATATATTGCAATAACAAAGCCAAAGGTGAACATCTAT
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Coding sequence (CDS) from alignment at chr15:593891..596132+

>NO15G02110.1 ID=NO15G02110.1|Name=NO15G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr15:593891..596132+ (Nannochloropsis oceanica)
ATGCTTATGTGCCCTGCGATGGCATACGATCATAAAAGTCATGCTTTCCT
CCTAGCTCGGCCCACATGCCCCCTTTCAATCGAGCCCCTCACGACACTGT
CAACCGATTCGATGCGCATTAACCACAGCACAATAAAAGCACCACCAGCC
GAGAGGACTGGCCAAAAAATGCGTCCGATAATGGCAGCCATCCACATACT
TGTGGCGATGCTTCTCGTTGTCTCCAGCGCGAACAAGAAGGCAGCTCTCT
ATCATGCCAAAAAACTCCGTGAAAAGGGGGCAGCTGTTGCCATTGAGGCT
TCGGGATACGCCGAGGATGTGCATACATTCAAGGAGCTCGAGTCCAAGCT
GTCCGGATGCCACCTCAAGGGGCCCTGCGCCTGGCAGTTCAGCTTCACGC
CCACTGACGTCAGTGTCATCGCACCGGAGCCCCATGTCATTTACCACTAC
TCCTTGCACACCATGTTTGAGCATGACACGACCGTCTATCGCATCCGGGG
CCAATTTCCCAAGGTACGCTATTTCTCCGTGCAGACCTACACCTTCTTGC
GGCAGCCCATCGACGGCATAGCCGACTACCACATGACGCCTTCCACTGGC
ATCAATCCCTTTCTTAATCGTGTGAATTCTTCAGATGATAACGGGCACTA
CGAGGTTTACTTCACAGCCAACGGCGACCACGGTTACCCTAACGAGCTCC
GCGCCTACCAACCAGACCGCGGCCTGACGACGCTGCGCGGCGGGAAAAAC
ACGTCCTTCAACCTCTTCACCATGGCTATCCGTTTTTATGCCTCCGATCC
AAGCAATGACCAGAGCGTGATCTGGGGCCGGGGCCCGTCGCTGTTTGGGT
TCGTGGATCCGCCCACAGTGGAGTGGCGCAAGCACGACAACGGCGCATGG
CAGGTTATTCCTCAGTGCTCCCCTACAGAACAGCAGTGCAACACTGCCAT
CTTGGACAGCTTCATGAGCTTTCCACAATTTCTTTTACCCCTTCGTGACA
TCCCTGGCTTCATTTGCCCCGTGGCAGAGAAGGACAAGATTAACTCCGAC
TTTTACCTGTGGCGAGCGAAGCTCCCCCAAATTCTTGATTTGTATATTGG
CTTCAAAAATTCAGACGTCACTTACCTTTACTGGTGTGACATTGCCGCAC
GGATGGGCAAAGACTTTGTGCTCAAGATCACCGGTACTCTGGGAAGCACG
CCCAAGGGTTTGTATGACGAGCCGTTGGTGTCGCACCCGTGGGAGTACGA
CTCCCGCTACATCTCCTTTCACGCCGTGGACCTGCGCCCACCCATCCCTT
CCTACTCGGCTATCTACGACGGAGACCTGTGGGCGAAACATGGCCCGGGC
TGGAATCGGCAGTACACCATAATCTCGGCAGAGGATGAGTCCGTGGCGGA
AGCATGCGGACTTCTGGACCGTAGCAAGGATTCGTTCCTCGCTTTCAGTC
GCGCCGATGGGAATATGAGCTCTCGGCATGTGGCGACTCCTGGCATTATC
TACCGAGAAATTTTGCCGCGCATCACACGTTTGAAAGAAGGCGGCAAGTC
TCCCACGGACGTGGCCCAGCAGTGTGGCATGGAGACTGACCTCCCCGATG
CCGTGTCGAGCGAAGACATTGCTAGCTCTTCCATGGGCATGGGTGGCCAC
GCTCTGAAGAAGCCTCACAACCCCCAGTGCGACGATCCCAACTTCTCCCG
TCTCGTGATGCAAGAGCGCTATCCCGAGATAGCCGTCTACCACTGCGATG
TGAATTCTGGCGTTGCTACGCTACTCGCGTAA
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Synonyms
Publications