NO15G02100.1, NO15G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02100.1
Unique NameNO15G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1723
Alignment locationchr15:592168..593890 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:592168..593890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02100.1 vs.
Match: EWM22361.1 (programmed cell death protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 473.8 bits (1218), Expect = 7.100e-130
Identity = 282/546 (51.65%), Postives = 342/546 (62.64%), Query Frame = 0 
Query:    1 MAAEAAQAGLAEAEPGVPS------TPPQGHDEGEAVKEEEVSWETVGISKGLSEDNKPTEGSKPSSPFSASAPPSATKGCQKEDDDDSDDESSSGKDDDGVQLGFVESITSELKGKLLFQDPDWHEWDGGKVGGKPIWLNPRDLPSRAMLDCASCQDPLVFILQIYCPLDEPMEAFHRVLYVFACRKPRCYGKGCIKVLRCQLSRKNAFYAYVGDSGRSKKVELKEMREARESLAAKTCDLCGQGADKVCAGCKGVNYCTRTHQKEGWKAGHKHVCKGLWNGKGDAEGQCHEMEGGTD-DATATNGSAPAEGEGRGEGAAAPAAPAAPAAPEARDSPPPSL--SVFPEFEIVIEEEKREEGEGQGKNKEDDGNAALLKKYRDVVVNETDDDARVGQRHLDEATGAKFSLKDRQSLRFLAVIGREPEQILRYARWNDKAPLWVSEEDQPSIDIDVPACERCGGRRAFEFQVMPQLLHYLRVDSQAIFPSKPGEGFRLGAMDWGTLAVYTCMKSCGGGG-----GEGGGEEEGSYVEEFVWRQKPMA 533
            M  +  QAG+  +   +P       T  +G + G    + +   E  G  +G  +D  PT  S    P  A        GC  ED   SDD SS    D G+QLGFVE +  E++ +LLFQDPDW +WDGGKVGGKPIWLNPRDLP + +L C SCQDPL F+LQIYCPLDEP EAFHR LYVF C+K RC G GC+K LRCQL R+N FYA      R     +K     R +LA +TCD+CG  ADKVCAGCK V+YCT  HQKEGWK GHK  C+ +   K   EG      GG +  A  T+G  PA        +  P    AP      DS   +   S FPE+EIVIEEE R + +     +E D +AALL+KY+ V+V+ETDDDA + Q+HL++ATGAK +L D  SLRFLAVIGR P QILRYARW+D A LWVS +++P+   D+P+C  CG RRAFEFQVMPQLLH+LRVD+Q      PG   +LG++DWGTLAVYTC+KSC  G       EG G EEG YVEEFVWRQKPMA
Sbjct:    9 MDGDETQAGMTPSTIKIPVDCRRMLTKEEGWNSGT---DSKYRCEAKGSGRG--KDVSPTSTSPLLVPV-ADTEIKRKVGCIGEDGRSSDD-SSDDDGDRGMQLGFVERLPEEMQNRLLFQDPDWRDWDGGKVGGKPIWLNPRDLPPQKLLLCPSCQDPLSFVLQIYCPLDEPEEAFHRALYVFVCQKFRCQGPGCVKALRCQLPRQNLFYASDPRDIRKNGGRIK----GRAALAVRTCDVCGLRADKVCAGCKRVSYCTPKHQKEGWKTGHKLDCRKVEREKLATEG------GGQERGANLTSGGVPAS-------SVNPPQANAPDLGRPADSGVKNALRSTFPEYEIVIEEE-RVQNDAVRDAREQDADAALLEKYKHVIVSETDDDASLDQQHLNQATGAKLALTDALSLRFLAVIGRYPAQILRYARWDDAAALWVSRDERPASSTDIPSCPLCGARRAFEFQVMPQLLHHLRVDAQV---QAPGH-LQLGSLDWGTLAVYTCVKSCRTGEKVTGIEEGTGGEEGRYVEEFVWRQKPMA 525
The following BLAST results are available for this feature:
BLAST of NO15G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22361.17.100e-13051.65programmed cell death protein 2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02100NO15G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02100.1NO15G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02100.1.cds1NO15G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02100.1 ID=NO15G02100.1|Name=NO15G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp
TCAGGCACAAAATTGCAGCGGTGGTCTTTGCAAGTCGCTTTCCGCAGAGC
AAAGCTTCCTGCTAGATTGTGATGGCGGCCGAGGCAGCTCAAGCGGGCTT
GGCGGAGGCGGAACCCGGAGTGCCCTCAACACCACCGCAAGGTCATGATG
AGGGCGAAGCCGTGAAGGAAGAGGAGGTGAGTTGGGAAACGGTGGGTATC
AGCAAGGGCTTGTCCGAAGACAACAAGCCCACGGAGGGAAGCAAACCATC
CTCTCCATTCTCCGCCTCGGCCCCGCCCTCCGCCACGAAAGGCTGCCAAA
AGGAGGATGACGACGACAGTGACGATGAGTCTTCGAGCGGAAAGGACGAC
GATGGCGTGCAGCTTGGCTTTGTGGAGTCCATTACCTCAGAGCTAAAAGG
CAAGTTGCTCTTTCAAGATCCAGACTGGCATGAATGGGATGGGGGAAAGG
TGGGAGGGAAACCCATCTGGCTCAACCCACGCGATCTTCCCTCACGCGCT
ATGTTGGATTGTGCATCATGTCAGGACCCACTCGTTTTTATTTTGCAGAT
ATATTGCCCATTGGACGAACCTATGGAGGCATTTCATCGTGTGTTATATG
TGTTTGCGTGTCGCAAGCCTCGGTGTTACGGGAAAGGTTGTATCAAGGTC
CTACGGTGTCAGCTTTCGAGAAAGAATGCATTCTACGCTTATGTTGGGGA
CAGCGGGAGAAGTAAGAAGGTGGAGTTGAAAGAGATGAGGGAGGCGAGGG
AGAGTCTGGCGGCGAAGACCTGTGACTTGTGTGGGCAGGGCGCGGATAAG
GTATGTGCGGGTTGCAAGGGTGTGAATTACTGCACCCGGACCCATCAGAA
GGAGGGATGGAAAGCGGGACATAAACACGTGTGTAAAGGACTATGGAACG
GGAAAGGGGATGCGGAAGGGCAGTGCCACGAAATGGAGGGTGGGACTGAT
GATGCGACGGCGACGAACGGATCAGCACCAGCAGAAGGAGAAGGAAGAGG
GGAAGGAGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGAAG
CACGAGATTCCCCACCCCCCTCTTTGTCTGTCTTTCCTGAGTTTGAAATC
GTGATTGAGGAAGAGAAGCGAGAAGAGGGAGAAGGGCAGGGGAAGAACAA
GGAGGATGACGGTAACGCGGCTCTTCTGAAAAAGTACCGAGATGTGGTAG
TAAACGAGACAGACGACGACGCCCGTGTTGGTCAACGACATCTGGACGAA
GCAACGGGGGCAAAGTTTTCATTAAAAGATCGGCAAAGCTTGCGTTTTCT
GGCTGTGATAGGGAGGGAACCAGAGCAGATATTGAGGTATGCGAGGTGGA
ATGATAAAGCCCCTTTATGGGTCTCCGAAGAAGACCAGCCTTCTATAGAT
ATTGATGTGCCCGCTTGTGAGAGGTGTGGAGGTAGAAGAGCATTTGAATT
TCAGGTGATGCCCCAACTGTTGCATTATTTGAGAGTGGATTCACAGGCGA
TTTTTCCGAGTAAGCCTGGTGAAGGGTTCAGGTTGGGGGCGATGGATTGG
GGAACATTGGCCGTGTATACGTGTATGAAGAGCTGTGGGGGTGGTGGAGG
GGAGGGAGGGGGAGAGGAAGAGGGAAGTTATGTAGAGGAATTCGTGTGGC
GGCAAAAGCCGATGGCGTGAGAGAGCGGAGGACGGCGAGGACGAAATGGA
GGACGAGGAAAAGAAGGGAACAA
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protein sequence of NO15G02100.1

>NO15G02100.1-protein ID=NO15G02100.1-protein|Name=NO15G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MAAEAAQAGLAEAEPGVPSTPPQGHDEGEAVKEEEVSWETVGISKGLSED
NKPTEGSKPSSPFSASAPPSATKGCQKEDDDDSDDESSSGKDDDGVQLGF
VESITSELKGKLLFQDPDWHEWDGGKVGGKPIWLNPRDLPSRAMLDCASC
QDPLVFILQIYCPLDEPMEAFHRVLYVFACRKPRCYGKGCIKVLRCQLSR
KNAFYAYVGDSGRSKKVELKEMREARESLAAKTCDLCGQGADKVCAGCKG
VNYCTRTHQKEGWKAGHKHVCKGLWNGKGDAEGQCHEMEGGTDDATATNG
SAPAEGEGRGEGAAAPAAPAAPAAPEARDSPPPSLSVFPEFEIVIEEEKR
EEGEGQGKNKEDDGNAALLKKYRDVVVNETDDDARVGQRHLDEATGAKFS
LKDRQSLRFLAVIGREPEQILRYARWNDKAPLWVSEEDQPSIDIDVPACE
RCGGRRAFEFQVMPQLLHYLRVDSQAIFPSKPGEGFRLGAMDWGTLAVYT
CMKSCGGGGGEGGGEEEGSYVEEFVWRQKPMA*
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mRNA from alignment at chr15:592168..593890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02100.1 ID=NO15G02100.1|Name=NO15G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp|location=Sequence derived from alignment at chr15:592168..593890- (Nannochloropsis oceanica)
TCAGGCACAAAATTGCAGCGGTGGTCTTTGCAAGTCGCTTTCCGCAGAGC
AAAGCTTCCTGCTAGATTGTGATGGCGGCCGAGGCAGCTCAAGCGGGCTT
GGCGGAGGCGGAACCCGGAGTGCCCTCAACACCACCGCAAGGTCATGATG
AGGGCGAAGCCGTGAAGGAAGAGGAGGTGAGTTGGGAAACGGTGGGTATC
AGCAAGGGCTTGTCCGAAGACAACAAGCCCACGGAGGGAAGCAAACCATC
CTCTCCATTCTCCGCCTCGGCCCCGCCCTCCGCCACGAAAGGCTGCCAAA
AGGAGGATGACGACGACAGTGACGATGAGTCTTCGAGCGGAAAGGACGAC
GATGGCGTGCAGCTTGGCTTTGTGGAGTCCATTACCTCAGAGCTAAAAGG
CAAGTTGCTCTTTCAAGATCCAGACTGGCATGAATGGGATGGGGGAAAGG
TGGGAGGGAAACCCATCTGGCTCAACCCACGCGATCTTCCCTCACGCGCT
ATGTTGGATTGTGCATCATGTCAGGACCCACTCGTTTTTATTTTGCAGAT
ATATTGCCCATTGGACGAACCTATGGAGGCATTTCATCGTGTGTTATATG
TGTTTGCGTGTCGCAAGCCTCGGTGTTACGGGAAAGGTTGTATCAAGGTC
CTACGGTGTCAGCTTTCGAGAAAGAATGCATTCTACGCTTATGTTGGGGA
CAGCGGGAGAAGTAAGAAGGTGGAGTTGAAAGAGATGAGGGAGGCGAGGG
AGAGTCTGGCGGCGAAGACCTGTGACTTGTGTGGGCAGGGCGCGGATAAG
GTATGTGCGGGTTGCAAGGGTGTGAATTACTGCACCCGGACCCATCAGAA
GGAGGGATGGAAAGCGGGACATAAACACGTGTGTAAAGGACTATGGAACG
GGAAAGGGGATGCGGAAGGGCAGTGCCACGAAATGGAGGGTGGGACTGAT
GATGCGACGGCGACGAACGGATCAGCACCAGCAGAAGGAGAAGGAAGAGG
GGAAGGAGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGAAG
CACGAGATTCCCCACCCCCCTCTTTGTCTGTCTTTCCTGAGTTTGAAATC
GTGATTGAGGAAGAGAAGCGAGAAGAGGGAGAAGGGCAGGGGAAGAACAA
GGAGGATGACGGTAACGCGGCTCTTCTGAAAAAGTACCGAGATGTGGTAG
TAAACGAGACAGACGACGACGCCCGTGTTGGTCAACGACATCTGGACGAA
GCAACGGGGGCAAAGTTTTCATTAAAAGATCGGCAAAGCTTGCGTTTTCT
GGCTGTGATAGGGAGGGAACCAGAGCAGATATTGAGGTATGCGAGGTGGA
ATGATAAAGCCCCTTTATGGGTCTCCGAAGAAGACCAGCCTTCTATAGAT
ATTGATGTGCCCGCTTGTGAGAGGTGTGGAGGTAGAAGAGCATTTGAATT
TCAGGTGATGCCCCAACTGTTGCATTATTTGAGAGTGGATTCACAGGCGA
TTTTTCCGAGTAAGCCTGGTGAAGGGTTCAGGTTGGGGGCGATGGATTGG
GGAACATTGGCCGTGTATACGTGTATGAAGAGCTGTGGGGGTGGTGGAGG
GGAGGGAGGGGGAGAGGAAGAGGGAAGTTATGTAGAGGAATTCGTGTGGC
GGCAAAAGCCGATGGCGTGAGAGAGCGGAGGACGGCGAGGACGAAATGGA
GGACGAGGAAAAGAAGGGAACAA
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Coding sequence (CDS) from alignment at chr15:592168..593890-

>NO15G02100.1 ID=NO15G02100.1|Name=NO15G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at chr15:592168..593890- (Nannochloropsis oceanica)
ATGGCGGCCGAGGCAGCTCAAGCGGGCTTGGCGGAGGCGGAACCCGGAGT
GCCCTCAACACCACCGCAAGGTCATGATGAGGGCGAAGCCGTGAAGGAAG
AGGAGGTGAGTTGGGAAACGGTGGGTATCAGCAAGGGCTTGTCCGAAGAC
AACAAGCCCACGGAGGGAAGCAAACCATCCTCTCCATTCTCCGCCTCGGC
CCCGCCCTCCGCCACGAAAGGCTGCCAAAAGGAGGATGACGACGACAGTG
ACGATGAGTCTTCGAGCGGAAAGGACGACGATGGCGTGCAGCTTGGCTTT
GTGGAGTCCATTACCTCAGAGCTAAAAGGCAAGTTGCTCTTTCAAGATCC
AGACTGGCATGAATGGGATGGGGGAAAGGTGGGAGGGAAACCCATCTGGC
TCAACCCACGCGATCTTCCCTCACGCGCTATGTTGGATTGTGCATCATGT
CAGGACCCACTCGTTTTTATTTTGCAGATATATTGCCCATTGGACGAACC
TATGGAGGCATTTCATCGTGTGTTATATGTGTTTGCGTGTCGCAAGCCTC
GGTGTTACGGGAAAGGTTGTATCAAGGTCCTACGGTGTCAGCTTTCGAGA
AAGAATGCATTCTACGCTTATGTTGGGGACAGCGGGAGAAGTAAGAAGGT
GGAGTTGAAAGAGATGAGGGAGGCGAGGGAGAGTCTGGCGGCGAAGACCT
GTGACTTGTGTGGGCAGGGCGCGGATAAGGTATGTGCGGGTTGCAAGGGT
GTGAATTACTGCACCCGGACCCATCAGAAGGAGGGATGGAAAGCGGGACA
TAAACACGTGTGTAAAGGACTATGGAACGGGAAAGGGGATGCGGAAGGGC
AGTGCCACGAAATGGAGGGTGGGACTGATGATGCGACGGCGACGAACGGA
TCAGCACCAGCAGAAGGAGAAGGAAGAGGGGAAGGAGCAGCAGCACCAGC
AGCACCAGCAGCACCAGCAGCACCAGAAGCACGAGATTCCCCACCCCCCT
CTTTGTCTGTCTTTCCTGAGTTTGAAATCGTGATTGAGGAAGAGAAGCGA
GAAGAGGGAGAAGGGCAGGGGAAGAACAAGGAGGATGACGGTAACGCGGC
TCTTCTGAAAAAGTACCGAGATGTGGTAGTAAACGAGACAGACGACGACG
CCCGTGTTGGTCAACGACATCTGGACGAAGCAACGGGGGCAAAGTTTTCA
TTAAAAGATCGGCAAAGCTTGCGTTTTCTGGCTGTGATAGGGAGGGAACC
AGAGCAGATATTGAGGTATGCGAGGTGGAATGATAAAGCCCCTTTATGGG
TCTCCGAAGAAGACCAGCCTTCTATAGATATTGATGTGCCCGCTTGTGAG
AGGTGTGGAGGTAGAAGAGCATTTGAATTTCAGGTGATGCCCCAACTGTT
GCATTATTTGAGAGTGGATTCACAGGCGATTTTTCCGAGTAAGCCTGGTG
AAGGGTTCAGGTTGGGGGCGATGGATTGGGGAACATTGGCCGTGTATACG
TGTATGAAGAGCTGTGGGGGTGGTGGAGGGGAGGGAGGGGGAGAGGAAGA
GGGAAGTTATGTAGAGGAATTCGTGTGGCGGCAAAAGCCGATGGCGTGA
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Synonyms
Publications