NO15G02030.1, NO15G02030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02030.1
Unique NameNO15G02030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1586
Alignment locationchr15:568598..570698 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:568598..570698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G02030.1 vs.
Match: EWM22408.1 (proteasome subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 456.8 bits (1174), Expect = 4.800e-125
Identity = 227/244 (93.03%), Postives = 237/244 (97.13%), Query Frame = 0 
Query:   19 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDDHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVLNVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLFQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYYAEFEELGVDDLIKHALKALSGTTGDKELDKDNASVAVVGKDHPLQIIEGEELQKYLDAVEVEGNAGGT 263
            MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVD+HIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLV++VADKHQRCTQSYVRRPYGVGLLIASYDQTGPHL+QTDPSGAYYEYIAQAIGSRAQSGKTYLEKY+AEFE LG D+LIKHALKALSGT GDKEL KDNASVAVVGKDHPL+IIEGE LQ+YLDA+EVEG+ G T
Sbjct:    1 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVVDVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSGTAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAIEVEGDTGDT 244
The following BLAST results are available for this feature:
BLAST of NO15G02030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22408.14.800e-12593.03proteasome subunit alpha [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02030NO15G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02030.1NO15G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02030.1.cds1NO15G02030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02030.1.cds2NO15G02030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02030.1.cds3NO15G02030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02030.1.cds4NO15G02030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02030.1 ID=NO15G02030.1|Name=NO15G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp
CCTGTTTTCAGCCACCCGCTTATTTTGTGCGTCTCCTTTGTGCGTCGCTA
CAACAATTCAACGGACTAACCCTTAATCACCAAGTTCCATGGATTGATGT
AAAAGCATGGTTTTTCGCTTCCTCTCGTCTTGCCGAGCACAGTGGTGACT
GTCTCGCATCGCACATCGTCTTACTTCACGAGATGATTGTCTTTGTCTCC
CATGTCCTTGTGACAAGCGCTAAGGCCTTCAAGGCCCACTCCCCCCTACC
ATGGTGCTCAAATCTGTAATCTGTGTCATTCCGCCCCTTGTCTTGCACCG
AAGCAACTGACTCGGAGGGCTTCTCCAAAAGGCCGGCACATCGCCACAGA
CGACGACTTCGCTTTCCTTCCTTGCGAGGATGCTTTCTCTGCAGTGCCTC
ACCCTGAAAGCTTGACTAGGCTGCCGCCACTTTTCTCGATGAGGTAGATG
AGGATACTGGGGTCACACTGACACGCCGGGGTGGGCGACGGTCCTCGGGG
GGAAGAAAGCTCCCTGGCGAAGCGAAGAAGACGAAGAAGGTGATGCTTCC
CTGCACTCACCTTTGCCCTCTCCCTCATACACCCACTCAGGCAGACATGT
TCCGCAACCAGTACGATACCGATGTTACTGTGTGGAGTCCTCAGGGCCGG
CTGCATCAAGTGGAGTACGCGTTGGAGGCGGTCAAGCAGGGTGCCTGTGC
CCTCGGCCTGCGCTCCAAGGACTTCGTCGTTCTAGCGGCCCTCAAGCGTT
CGGCCAATGAACTGTCGTCATACCAAAAGAAGATTTTCAAGGTGGACGAT
CATATCGGGATTGCCATTTCGGGCTTGACTGCCGATGCCCGCTCTTTGGC
CAAGTACATGCGGACCGAGGCCTTGAACCATAAGTACGTCTATGGCAGCG
CTTTACAGGCCAGCCGGTTGGTGTTGAATGTTGCAGACAAGCATCAGCGA
TGCACTCAGTCTTATGTTCGACGGCCGTATGGTGTGGGGCTATTGATTGC
TTCCTACGACCAGACTGGCCCCCACCTCTTCCAAACCGACCCCTCGGGTG
CCTACTACGAATATATTGCCCAAGCCATCGGCTCGCGCGCGCAATCCGGC
AAGACATATCTAGAGAAGTATTATGCGGAGTTTGAGGAGCTGGGTGTGGA
TGATTTGATCAAGCATGCGTTGAAGGCGCTTTCGGGGACGACGGGAGACA
AGGAGCTGGATAAGGACAATGCTTCGGTAGCTGTGGTGGGGAAAGATCAT
CCGTTACAGATCATTGAGGGAGAGGAGCTGCAAAAGTACTTGGATGCGGT
CGAGGTGGAGGGCAATGCCGGCGGGACGGCGGCGGGTGAGGAGGCGATGG
AGCTGGCGTCGGAGGGAGAGAGTATGAGCACGTCGTAAATTGTGTGTGGG
ACAGGGGAGAGGAGGGGGATGCTTGGAAGTGGTAGGTAAAGGAGGGCATT
CGTAAAAGGGTCCAAGGCGGAAGAAGAAAAAGAAGAAAAAAATATTGTTC
GCTCGATCATGACGTATTTTCGGTGACCGTCTGTGTCAGTGTGTCTTGCA
TATTCAATTCACTTCGTTTTCTCGGGCGAAAACGGG
back to top

protein sequence of NO15G02030.1

>NO15G02030.1-protein ID=NO15G02030.1-protein|Name=NO15G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MLPCTHLCPLPHTPTQADMFRNQYDTDVTVWSPQGRLHQVEYALEAVKQG
ACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDDHIGIAISGLTADAR
SLAKYMRTEALNHKYVYGSALQASRLVLNVADKHQRCTQSYVRRPYGVGL
LIASYDQTGPHLFQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYYAEFEEL
GVDDLIKHALKALSGTTGDKELDKDNASVAVVGKDHPLQIIEGEELQKYL
DAVEVEGNAGGTAAGEEAMELASEGESMSTS*
back to top

mRNA from alignment at chr15:568598..570698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02030.1 ID=NO15G02030.1|Name=NO15G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2101bp|location=Sequence derived from alignment at chr15:568598..570698+ (Nannochloropsis oceanica)
CCTGTTTTCAGCCACCCGCTTATTTTGTGCGTCTCCTTTGTGCGTCGCTA
CAACAATTCAACGGACTAACCCTTAATCACCAAGTTCCATGGATTGATGT
AAAAGCATGGTTTTTCGCTTCCTCTCGTCTTGCCGAGCACAGTGGTGACT
GTCTCGCATCGCACATCGTCTTACTTCACGAGATGATTGTCTTTGTCTCC
CATGTCCTTGTGACAAGCGCTAAGGCCTTCAAGGCCCACTCCCCCCTACC
ATGGTGCTCAAATCTGTAATCTGTGTCATTCCGCCCCTTGTCTTGCACCG
AAGCAACTGACTCGGAGGGCTTCTCCAAAAGGCCGGCACATCGCCACAGA
CGACGACTTCGCTTTCCTTCCTTGCGAGGATGCTTTCTCTGCAGTGCCTC
ACCCTGAAAGCTTGACTAGGCTGCCGCCACTTTTCTCGATGAGGTAGATG
AGGATACTGGGGTCACACTGACACGCCGGGGTGGGCGACGGTCCTCGGGG
GGAAGAAAGCTCCCTGGCGAAGCGAAGAAGACGAAGAAGGTGATGCTTCC
CTGCACTCACCTTTGCCCTCTCCCTCATACACCCACTCAGGCAGACATGT
TCCGCAACCAGTACGATACCGATGTTACTGTGTGGAGTCCTCAGGGCCGG
CTGCATCAAGTGGAGTACGCGTTGGAGGCGGTCAAGCAGGTATGTAGAGG
ACTGCAAAAGGATAGGAGGCTAGCAAATAGTCATGTCGGGGAGATTGTCG
TGTACATGTAGTGGAGGGGATGTCACAGCACCACGGCACAATAAAGAAAG
ATATCTTAACGTAGGGATGAGTACCAAAGATATTTAGGAGGCTGCGGTTT
GGAGCCAGATAATTAGACGCTCACTCTCCCCCTTCCCTCAACTTCCCCTC
TCCCTCCCCTGATAGGGTGCCTGTGCCCTCGGCCTGCGCTCCAAGGACTT
CGTCGTTCTAGCGGCCCTCAAGCGTTCGGCCAATGAACTGTCGTCATACC
AAAAGAAGATTTTCAAGGTGGACGATCATATCGGGATTGCCATTTCGGGC
TTGACTGCCGATGCCCGCTCTTTGGCCAAGTACATGCGGACCGAGGCCTT
GAACCATAAGTACGTCTATGGCAGCGCTTTACAGGCCAGCCGGTTGGTGT
TGAATGTTGCAGACAAGCATCAGCGATGCACTCAGTCTTATGTTCGACGG
CCGTATGGTGTGGGGCTATTGGTACGTGGTGGGGAAAAGAGGGAAGGAGG
AATTGAGGAAGTACGGGGTTTTGACTTCGGTCTTTCTGTAAATATAAGGC
CTGCTATGCCATGCCCTACACCCCCGTGGACTCACATCCGAAGTATGTTC
TCACCTTTCCTCCTCCTTTCCTTCCATTACAGATTGCTTCCTACGACCAG
ACTGGCCCCCACCTCTTCCAAACCGACCCCTCGGGTGCCTACTACGAATA
TATTGCCCAAGCCATCGGCTCGCGCGCGCAATCCGGCAAGACATATCTAG
AGAAGTATTATGCGGAGTTTGAGGAGCTGGGTGTGGATGATTTGATCAAG
CATGCGTTGAAGGCGCTTTCGGGGACGACGGGTAAGTGTAGAGGATGGGG
AGGGAGGAAAGGAGGAAAGGAAGGGAGGATATTATTCATTGAGGTCCAAT
GTCGTGTCTAGAGTCGTACAGATGACTCATCATAGAACTCATGACAATCA
CACTGGTAGGAGACAAGGAGCTGGATAAGGACAATGCTTCGGTAGCTGTG
GTGGGGAAAGATCATCCGTTACAGATCATTGAGGGAGAGGAGCTGCAAAA
GTACTTGGATGCGGTCGAGGTGGAGGGCAATGCCGGCGGGACGGCGGCGG
GTGAGGAGGCGATGGAGCTGGCGTCGGAGGGAGAGAGTATGAGCACGTCG
TAAATTGTGTGTGGGACAGGGGAGAGGAGGGGGATGCTTGGAAGTGGTAG
GTAAAGGAGGGCATTCGTAAAAGGGTCCAAGGCGGAAGAAGAAAAAGAAG
AAAAAAATATTGTTCGCTCGATCATGACGTATTTTCGGTGACCGTCTGTG
TCAGTGTGTCTTGCATATTCAATTCACTTCGTTTTCTCGGGCGAAAACGG
G
back to top

Coding sequence (CDS) from alignment at chr15:568598..570698+

>NO15G02030.1 ID=NO15G02030.1|Name=NO15G02030.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr15:568598..570698+ (Nannochloropsis oceanica)
ATGCTTCCCTGCACTCACCTTTGCCCTCTCCCTCATACACCCACTCAGGC
AGACATGTTCCGCAACCAGTACGATACCGATGTTACTGTGTGGAGTCCTC
AGGGCCGGCTGCATCAAGTGGAGTACGCGTTGGAGGCGGTCAAGCAGGGT
GCCTGTGCCCTCGGCCTGCGCTCCAAGGACTTCGTCGTTCTAGCGGCCCT
CAAGCGTTCGGCCAATGAACTGTCGTCATACCAAAAGAAGATTTTCAAGG
TGGACGATCATATCGGGATTGCCATTTCGGGCTTGACTGCCGATGCCCGC
TCTTTGGCCAAGTACATGCGGACCGAGGCCTTGAACCATAAGTACGTCTA
TGGCAGCGCTTTACAGGCCAGCCGGTTGGTGTTGAATGTTGCAGACAAGC
ATCAGCGATGCACTCAGTCTTATGTTCGACGGCCGTATGGTGTGGGGCTA
TTGATTGCTTCCTACGACCAGACTGGCCCCCACCTCTTCCAAACCGACCC
CTCGGGTGCCTACTACGAATATATTGCCCAAGCCATCGGCTCGCGCGCGC
AATCCGGCAAGACATATCTAGAGAAGTATTATGCGGAGTTTGAGGAGCTG
GGTGTGGATGATTTGATCAAGCATGCGTTGAAGGCGCTTTCGGGGACGAC
GGGAGACAAGGAGCTGGATAAGGACAATGCTTCGGTAGCTGTGGTGGGGA
AAGATCATCCGTTACAGATCATTGAGGGAGAGGAGCTGCAAAAGTACTTG
GATGCGGTCGAGGTGGAGGGCAATGCCGGCGGGACGGCGGCGGGTGAGGA
GGCGATGGAGCTGGCGTCGGAGGGAGAGAGTATGAGCACGTCGTAA
back to top
Synonyms
Publications