NO15G01950.1, NO15G01950.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G01950.1
Unique Name	NO15G01950.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1926
Alignment location	chr15:544805..547029 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:544805..547029 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO15G01950.1 vs.
Match: EWM22407.1 (carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 922.2 bits (2382), Expect = 9.100e-265
Identity = 487/622 (78.30%), Postives = 535/622 (86.01%), Query Frame = 0

Query:   20 VLFFVFMQIVMASALQDHTDLRQRTSTLGKVSRSHITEAVSSSFLLSLPAATAAVGATQVFPLLRRRGGAWDFIRREKIGTAKALAKPKPAKKGAVNSNSKSSSISSSSSSSATTTKAGKPKRPKAALLTRKEAPKFFALSLMMFCIIYVFTMTRDTKDTLIVSYCGAEAIAFLKVYGVVPAAMAFMVGYSWAANHLSKRSLFYVTIVPFFAFYALFAYVLYPNRHNLHLEQLAPIAGASLPYVRNLFRYWIFSIYYITSELWGSAGVPLLFWQCANDVTPIDQAKRFYPLFAVLGNMAPIVSGQTTAFVSKWIKKLHPHDEHLAFENTLKVLTSFMMAAGGIVMALYWYVMDVSSAQAAQAQAMLSKSALKKQSIAIEHSSKKAKPGLLESMKILSKSRWLECIAVMVVSYGLTMEFTEIIWKATVKMAFPNKQDYMEFMGNYSTVVGIMTVLMLLLGSNTIKILGWRVGAMATPVLMATLAAPFFAYISFGDMHGSRQALMTALTIGTIQNILSKATKYAFFDPTKEMAYIPLDQEAKVKGKAAIDVLGARLGKSGGALGQQALVLAFGGIMRGAPVLAGLFYLVIFGWLSSVNRLSKMFLDNEKKTTEGCTKTAANGHH 642
            V+F +  Q+ ++S++ D  D     +       S +       +LL+  + +A   A     LLRRRGGAW+FIRRE+IG AK LAK  P KK  V  ++  +              AGK K+ +A LLT KEAPKFFALSLMMFCIIYVFTMTRDTKDTLIVSYCGAEAIAFLKVYGVVPAAMAFMVGYS AAN+LSKR+LFYVTI+PFFAFYALFAYVLYPNRHNLHLEQ AP  GA+LPYVRNLFRYWIFS+YYITSELWGSAGVPLLFWQCANDVTPIDQAKRFYPLFAVLGNMAPIVSGQTTAFVSKWIK+LHPHDEHLAFENTLKVLT+FMMAAGGIVM+LYWYVMDVS+ QA Q QA+LSK+AL+KQ+ A +  +KK+KPGLLESM+ILSKSRWLECIAVMVVSYGLTMEFTEIIWKATVKMA+P+KQDYMEFMGNYSTVVG+MTVLMLLLGSNTIKILGWRVGAMATPVLMATLAAPFFAYISFGDM GSRQALMTAL IGT+QNILSKATKYAFFDPTKEMAYIPLD+EAKVKGKAAIDVLGARLGKSGGALGQQALVLAFGGIM+GAPVLAGLFYLVI GWLSSVN+L+ +F +NEKKT    T+TAANGHH
Sbjct:   26 VIFLLLGQLSISSSVLDPNDKLYSMA-------SRVLSTSDKGWLLTRASQSANAIARDASSLLRRRGGAWNFIRRERIGPAKVLAKITPMKKDVVKESASMA--------------AGKDKKNRATLLTCKEAPKFFALSLMMFCIIYVFTMTRDTKDTLIVSYCGAEAIAFLKVYGVVPAAMAFMVGYSAAANYLSKRALFYVTIIPFFAFYALFAYVLYPNRHNLHLEQFAPSPGANLPYVRNLFRYWIFSLYYITSELWGSAGVPLLFWQCANDVTPIDQAKRFYPLFAVLGNMAPIVSGQTTAFVSKWIKRLHPHDEHLAFENTLKVLTTFMMAAGGIVMSLYWYVMDVSTTQATQRQALLSKAALRKQAAAAK-MAKKSKPGLLESMRILSKSRWLECIAVMVVSYGLTMEFTEIIWKATVKMAYPHKQDYMEFMGNYSTVVGVMTVLMLLLGSNTIKILGWRVGAMATPVLMATLAAPFFAYISFGDMRGSRQALMTALAIGTVQNILSKATKYAFFDPTKEMAYIPLDEEAKVKGKAAIDVLGARLGKSGGALGQQALVLAFGGIMQGAPVLAGLFYLVIIGWLSSVNKLAHLFHENEKKTAASSTQTAANGHH 625

The following BLAST results are available for this feature:

BLAST of NO15G01950.1 vs.

BLAST of NO15G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22407.1	9.100e-265	78.30	carrier protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G01950	NO15G01950	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G01950.1	NO15G01950.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G01950.1.cds1	NO15G01950.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G01950.1.cds2	NO15G01950.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:544805..547029-
coding sequence from alignment at chr15:544805..547029-

mRNA sequence

>NO15G01950.1 ID=NO15G01950.1|Name=NO15G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp
ATGGCGTCACGTACCCCTAGAAGGGCAGCCTCAAGATTAATTAGATGTGT
AGGGGTTGTATTGTTTTTCGTGTTTATGCAGATAGTGATGGCGTCGGCAT
TGCAAGATCACACAGATCTAAGGCAAAGGACAAGCACATTGGGCAAAGTC
TCACGATCGCACATTACAGAAGCAGTATCATCATCATTTCTATTATCTCT
ACCGGCAGCAACAGCAGCTGTAGGGGCAACACAGGTCTTCCCTCTCTTGC
GCCGCCGAGGGGGCGCCTGGGACTTTATCAGAAGAGAAAAGATCGGCACA
GCCAAGGCGCTCGCCAAGCCAAAGCCTGCCAAGAAGGGTGCAGTCAACAG
CAACAGCAAAAGCAGCAGCATCAGTAGTAGCAGCAGCAGCAGCGCCACCA
CTACTAAGGCCGGCAAACCCAAGAGACCGAAAGCAGCGCTCTTAACCCGG
AAGGAAGCCCCCAAGTTTTTCGCGTTAAGCCTGATGATGTTCTGCATCAT
CTACGTTTTCACCATGACCCGCGACACAAAAGACACCCTCATTGTTTCTT
ATTGTGGGGCGGAGGCCATCGCTTTCCTGAAAGTTTACGGCGTCGTTCCC
GCCGCCATGGCCTTCATGGTGGGGTACTCCTGGGCTGCGAACCACCTGTC
AAAGCGCTCCTTATTCTACGTGACCATCGTCCCGTTCTTCGCATTTTATG
CGCTTTTTGCCTACGTGCTGTACCCGAACCGTCATAACCTCCACCTAGAG
CAACTCGCCCCTATTGCCGGTGCTAGTCTCCCCTACGTTCGCAATCTGTT
TCGGTACTGGATCTTTTCGATTTATTACATCACTTCCGAGTTATGGGGCT
CGGCAGGAGTGCCCTTGTTGTTTTGGCAGTGTGCGAATGACGTGACCCCC
ATTGATCAAGCCAAGAGGTTCTATCCCCTTTTTGCCGTTTTGGGAAATAT
GGCTCCGATCGTCTCGGGACAGACCACAGCGTTCGTGAGCAAGTGGATCA
AGAAACTGCATCCGCACGACGAGCATCTCGCTTTTGAAAACACGTTGAAG
GTGTTGACTTCCTTCATGATGGCCGCCGGCGGGATCGTCATGGCGCTCTA
CTGGTATGTGATGGACGTCAGCTCCGCGCAAGCCGCCCAAGCCCAAGCCA
TGCTCTCCAAGTCGGCCTTGAAGAAACAATCCATCGCGATTGAGCACAGC
AGTAAGAAGGCGAAGCCCGGCTTGCTTGAAAGTATGAAGATTCTTTCAAA
ATCTCGTTGGTTGGAATGCATTGCCGTCATGGTCGTCTCGTACGGCCTGA
CCATGGAATTTACGGAAATCATTTGGAAGGCGACGGTGAAAATGGCATTT
CCCAACAAGCAGGACTACATGGAGTTCATGGGGAATTACTCCACTGTTGT
CGGGATTATGACCGTGTTGATGTTGTTGTTAGGCAGCAATACGATTAAGA
TTCTGGGATGGAGGGTTGGGGCAATGGCGACACCTGTTTTGATGGCTACC
TTGGCTGCGCCGTTCTTTGCTTATATTTCGTTTGGGGATATGCATGGGTC
GAGGCAGGCGTTGATGACAGCTTTGACAATTGGGACGATTCAAAATATTT
TAAGCAAGGCGACGAAGTATGCTTTCTTTGACCCGACGAAGGAGATGGCG
TATATTCCCTTAGATCAGGAGGCGAAGGTGAAGGGGAAGGCAGCGATCGA
TGTGTTGGGGGCACGGCTGGGCAAGAGTGGGGGCGCACTGGGTCAGCAGG
CGTTGGTATTAGCGTTTGGAGGGATTATGAGGGGGGCGCCGGTGCTCGCG
GGACTATTCTATCTGGTGATTTTTGGATGGTTGTCGAGTGTGAATCGATT
GTCGAAGATGTTTTTGGATAATGAGAAGAAGACGACGGAGGGGTGCACAA
AGACGGCAGCGAATGGACATCATTAA

protein sequence of NO15G01950.1

>NO15G01950.1-protein ID=NO15G01950.1-protein|Name=NO15G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MASRTPRRAASRLIRCVGVVLFFVFMQIVMASALQDHTDLRQRTSTLGKV
SRSHITEAVSSSFLLSLPAATAAVGATQVFPLLRRRGGAWDFIRREKIGT
AKALAKPKPAKKGAVNSNSKSSSISSSSSSSATTTKAGKPKRPKAALLTR
KEAPKFFALSLMMFCIIYVFTMTRDTKDTLIVSYCGAEAIAFLKVYGVVP
AAMAFMVGYSWAANHLSKRSLFYVTIVPFFAFYALFAYVLYPNRHNLHLE
QLAPIAGASLPYVRNLFRYWIFSIYYITSELWGSAGVPLLFWQCANDVTP
IDQAKRFYPLFAVLGNMAPIVSGQTTAFVSKWIKKLHPHDEHLAFENTLK
VLTSFMMAAGGIVMALYWYVMDVSSAQAAQAQAMLSKSALKKQSIAIEHS
SKKAKPGLLESMKILSKSRWLECIAVMVVSYGLTMEFTEIIWKATVKMAF
PNKQDYMEFMGNYSTVVGIMTVLMLLLGSNTIKILGWRVGAMATPVLMAT
LAAPFFAYISFGDMHGSRQALMTALTIGTIQNILSKATKYAFFDPTKEMA
YIPLDQEAKVKGKAAIDVLGARLGKSGGALGQQALVLAFGGIMRGAPVLA
GLFYLVIFGWLSSVNRLSKMFLDNEKKTTEGCTKTAANGHH*

mRNA from alignment at chr15:544805..547029-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G01950.1 ID=NO15G01950.1|Name=NO15G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp|location=Sequence derived from alignment at chr15:544805..547029- (Nannochloropsis oceanica)
ATGGCGTCACGTACCCCTAGAAGGGCAGCCTCAAGATTAATTAGATGTGT
AGGGGTTGTATTGTTTTTCGTGTTTATGCAGATAGTGATGGCGTCGGCAT
TGCAAGGTTCGTGTACGGTGGATGCGGGTGAGTGGGAGTAGGATAGAATG
TTGAGACGCTCCAAGGCCTTGGAAAGTCGATCTTTTTTTACTCGCTTGTG
ACGACCCTGCAATGCGCTGCATCTCACATGCTAGAAGATTGCCTAGCGAA
GCCTTCGCATGGCATCATACCCTCCATTTTCTTTCGTATGTGGATACCTC
CTTTCACTCCATACCTCCTTTCACTCCCTTCACGCACACATCCTTCCCTT
AACCCCTACCCTCCAACTTCTCGCGTTTCCCTCTCTTGCATACACACACT
CACAGATCACACAGATCTAAGGCAAAGGACAAGCACATTGGGCAAAGTCT
CACGATCGCACATTACAGAAGCAGTATCATCATCATTTCTATTATCTCTA
CCGGCAGCAACAGCAGCTGTAGGGGCAACACAGGTCTTCCCTCTCTTGCG
CCGCCGAGGGGGCGCCTGGGACTTTATCAGAAGAGAAAAGATCGGCACAG
CCAAGGCGCTCGCCAAGCCAAAGCCTGCCAAGAAGGGTGCAGTCAACAGC
AACAGCAAAAGCAGCAGCATCAGTAGTAGCAGCAGCAGCAGCGCCACCAC
TACTAAGGCCGGCAAACCCAAGAGACCGAAAGCAGCGCTCTTAACCCGGA
AGGAAGCCCCCAAGTTTTTCGCGTTAAGCCTGATGATGTTCTGCATCATC
TACGTTTTCACCATGACCCGCGACACAAAAGACACCCTCATTGTTTCTTA
TTGTGGGGCGGAGGCCATCGCTTTCCTGAAAGTTTACGGCGTCGTTCCCG
CCGCCATGGCCTTCATGGTGGGGTACTCCTGGGCTGCGAACCACCTGTCA
AAGCGCTCCTTATTCTACGTGACCATCGTCCCGTTCTTCGCATTTTATGC
GCTTTTTGCCTACGTGCTGTACCCGAACCGTCATAACCTCCACCTAGAGC
AACTCGCCCCTATTGCCGGTGCTAGTCTCCCCTACGTTCGCAATCTGTTT
CGGTACTGGATCTTTTCGATTTATTACATCACTTCCGAGTTATGGGGCTC
GGCAGGAGTGCCCTTGTTGTTTTGGCAGTGTGCGAATGACGTGACCCCCA
TTGATCAAGCCAAGAGGTTCTATCCCCTTTTTGCCGTTTTGGGAAATATG
GCTCCGATCGTCTCGGGACAGACCACAGCGTTCGTGAGCAAGTGGATCAA
GAAACTGCATCCGCACGACGAGCATCTCGCTTTTGAAAACACGTTGAAGG
TGTTGACTTCCTTCATGATGGCCGCCGGCGGGATCGTCATGGCGCTCTAC
TGGTATGTGATGGACGTCAGCTCCGCGCAAGCCGCCCAAGCCCAAGCCAT
GCTCTCCAAGTCGGCCTTGAAGAAACAATCCATCGCGATTGAGCACAGCA
GTAAGAAGGCGAAGCCCGGCTTGCTTGAAAGTATGAAGATTCTTTCAAAA
TCTCGTTGGTTGGAATGCATTGCCGTCATGGTCGTCTCGTACGGCCTGAC
CATGGAATTTACGGAAATCATTTGGAAGGCGACGGTGAAAATGGCATTTC
CCAACAAGCAGGACTACATGGAGTTCATGGGGAATTACTCCACTGTTGTC
GGGATTATGACCGTGTTGATGTTGTTGTTAGGCAGCAATACGATTAAGAT
TCTGGGATGGAGGGTTGGGGCAATGGCGACACCTGTTTTGATGGCTACCT
TGGCTGCGCCGTTCTTTGCTTATATTTCGTTTGGGGATATGCATGGGTCG
AGGCAGGCGTTGATGACAGCTTTGACAATTGGGACGATTCAAAATATTTT
AAGCAAGGCGACGAAGTATGCTTTCTTTGACCCGACGAAGGAGATGGCGT
ATATTCCCTTAGATCAGGAGGCGAAGGTGAAGGGGAAGGCAGCGATCGAT
GTGTTGGGGGCACGGCTGGGCAAGAGTGGGGGCGCACTGGGTCAGCAGGC
GTTGGTATTAGCGTTTGGAGGGATTATGAGGGGGGCGCCGGTGCTCGCGG
GACTATTCTATCTGGTGATTTTTGGATGGTTGTCGAGTGTGAATCGATTG
TCGAAGATGTTTTTGGATAATGAGAAGAAGACGACGGAGGGGTGCACAAA
GACGGCAGCGAATGGACATCATTAA

Coding sequence (CDS) from alignment at chr15:544805..547029-

>NO15G01950.1 ID=NO15G01950.1|Name=NO15G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at chr15:544805..547029- (Nannochloropsis oceanica)
ATGGCGTCACGTACCCCTAGAAGGGCAGCCTCAAGATTAATTAGATGTGT
AGGGGTTGTATTGTTTTTCGTGTTTATGCAGATAGTGATGGCGTCGGCAT
TGCAAGATCACACAGATCTAAGGCAAAGGACAAGCACATTGGGCAAAGTC
TCACGATCGCACATTACAGAAGCAGTATCATCATCATTTCTATTATCTCT
ACCGGCAGCAACAGCAGCTGTAGGGGCAACACAGGTCTTCCCTCTCTTGC
GCCGCCGAGGGGGCGCCTGGGACTTTATCAGAAGAGAAAAGATCGGCACA
GCCAAGGCGCTCGCCAAGCCAAAGCCTGCCAAGAAGGGTGCAGTCAACAG
CAACAGCAAAAGCAGCAGCATCAGTAGTAGCAGCAGCAGCAGCGCCACCA
CTACTAAGGCCGGCAAACCCAAGAGACCGAAAGCAGCGCTCTTAACCCGG
AAGGAAGCCCCCAAGTTTTTCGCGTTAAGCCTGATGATGTTCTGCATCAT
CTACGTTTTCACCATGACCCGCGACACAAAAGACACCCTCATTGTTTCTT
ATTGTGGGGCGGAGGCCATCGCTTTCCTGAAAGTTTACGGCGTCGTTCCC
GCCGCCATGGCCTTCATGGTGGGGTACTCCTGGGCTGCGAACCACCTGTC
AAAGCGCTCCTTATTCTACGTGACCATCGTCCCGTTCTTCGCATTTTATG
CGCTTTTTGCCTACGTGCTGTACCCGAACCGTCATAACCTCCACCTAGAG
CAACTCGCCCCTATTGCCGGTGCTAGTCTCCCCTACGTTCGCAATCTGTT
TCGGTACTGGATCTTTTCGATTTATTACATCACTTCCGAGTTATGGGGCT
CGGCAGGAGTGCCCTTGTTGTTTTGGCAGTGTGCGAATGACGTGACCCCC
ATTGATCAAGCCAAGAGGTTCTATCCCCTTTTTGCCGTTTTGGGAAATAT
GGCTCCGATCGTCTCGGGACAGACCACAGCGTTCGTGAGCAAGTGGATCA
AGAAACTGCATCCGCACGACGAGCATCTCGCTTTTGAAAACACGTTGAAG
GTGTTGACTTCCTTCATGATGGCCGCCGGCGGGATCGTCATGGCGCTCTA
CTGGTATGTGATGGACGTCAGCTCCGCGCAAGCCGCCCAAGCCCAAGCCA
TGCTCTCCAAGTCGGCCTTGAAGAAACAATCCATCGCGATTGAGCACAGC
AGTAAGAAGGCGAAGCCCGGCTTGCTTGAAAGTATGAAGATTCTTTCAAA
ATCTCGTTGGTTGGAATGCATTGCCGTCATGGTCGTCTCGTACGGCCTGA
CCATGGAATTTACGGAAATCATTTGGAAGGCGACGGTGAAAATGGCATTT
CCCAACAAGCAGGACTACATGGAGTTCATGGGGAATTACTCCACTGTTGT
CGGGATTATGACCGTGTTGATGTTGTTGTTAGGCAGCAATACGATTAAGA
TTCTGGGATGGAGGGTTGGGGCAATGGCGACACCTGTTTTGATGGCTACC
TTGGCTGCGCCGTTCTTTGCTTATATTTCGTTTGGGGATATGCATGGGTC
GAGGCAGGCGTTGATGACAGCTTTGACAATTGGGACGATTCAAAATATTT
TAAGCAAGGCGACGAAGTATGCTTTCTTTGACCCGACGAAGGAGATGGCG
TATATTCCCTTAGATCAGGAGGCGAAGGTGAAGGGGAAGGCAGCGATCGA
TGTGTTGGGGGCACGGCTGGGCAAGAGTGGGGGCGCACTGGGTCAGCAGG
CGTTGGTATTAGCGTTTGGAGGGATTATGAGGGGGGCGCCGGTGCTCGCG
GGACTATTCTATCTGGTGATTTTTGGATGGTTGTCGAGTGTGAATCGATT
GTCGAAGATGTTTTTGGATAATGAGAAGAAGACGACGGAGGGGTGCACAA
AGACGGCAGCGAATGGACATCATTAA

Synonyms

Publications