NO15G01940.1, NO15G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01940.1
Unique NameNO15G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1218
Alignment locationchr15:542241..543458 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:542241..543458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01940.1 vs.
Match: EWM22386.1 (Protein kinase, ATP binding site [Nannochloropsis gaditana])

HSP 1 Score: 521.9 bits (1343), Expect = 1.700e-144
Identity = 282/380 (74.21%), Postives = 304/380 (80.00%), Query Frame = 0 
Query:   25 DTSLTGTAAK-TITTLLTPHFENES-GVIGRSSRRRSKERLATVAKGEATGAGVSSDSILQHVDGTVVSPRTTNLATTTPRSGTLAPPDEGEEGKKPEEGEEGGWKVGPEDFTPMCVIGQGAFGRVLQVRSKLDDCMYAMKVISKRMLRKKNHLSYMRAERDIMTKIDFPFVVGLKFSFQTEEKLFLIMDYLSGGELFFHLRKHGLILEDTARFYVAEMVLALEHLHAKGIIHRDLKPENVLLGKDGHLCLTDFGLAKELTAPTVGAEREGDEAAGEEGGRARTVCGTNEYMCPEMILKKGYGKAADWWSLGALMYEMMAGHAPFRAKTVKELNRKILHEKLSLPPFLSSEAHAVLKGLLERNVQKRLGATRSTMFEVGG 403
            D + TGTAA  TIT LLTP  E E  G  G               K  A+G G + D       G++ SP            GTL     G +  K  EG  GGWKVGPEDFTP+CVIGQGAFGRVLQVRSKLD+ +YAMKVISKRMLRKKNHLSYMRAERDIMTK+DFPFVVGLKFSFQT+EKLFL+MDYLSGGELFFHLRK GLILEDTARFYVAEMVLALEHLH++GIIHRDLKPENVL+GKDGHLCLTDFGLAKELTA +VG E  GD    E+G RA+TVCGTNEYMCPEMILKKGYGKAADWWSLGALMYEMMAGH PFRAKTVK+LNRKILHEKLSLPPFL+S+AHAVLKGLLERNVQKRLGATR+TMFEVGG
Sbjct:   23 DPTCTGTAAALTITDLLTPLLETEEPGTDGH--------------KSTASGEGDAEDLAA----GSLSSPELLG-------PGTLPA---GADLLKAAEGHPGGWKVGPEDFTPLCVIGQGAFGRVLQVRSKLDEGVYAMKVISKRMLRKKNHLSYMRAERDIMTKVDFPFVVGLKFSFQTDEKLFLVMDYLSGGELFFHLRKQGLILEDTARFYVAEMVLALEHLHSQGIIHRDLKPENVLVGKDGHLCLTDFGLAKELTALSVGGEDGGD----EDGARAQTVCGTNEYMCPEMILKKGYGKAADWWSLGALMYEMMAGHPPFRAKTVKDLNRKILHEKLSLPPFLTSDAHAVLKGLLERNVQKRLGATRATMFEVGG 370
The following BLAST results are available for this feature:
BLAST of NO15G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22386.11.700e-14474.21Protein kinase, ATP binding site [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01940NO15G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01940.1NO15G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01940.1.cds1NO15G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01940.1 ID=NO15G01940.1|Name=NO15G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
ATGGAGACACAGCAGCGGCACCAAAACGTTGATGAAATCCCTGCAGTTCG
CACCACCAGCCCCCTGACTGTCGATACATCCCTGACTGGCACGGCAGCCA
AGACTATTACCACCTTGTTGACGCCACATTTTGAGAACGAGAGTGGTGTC
ATCGGTAGGAGCAGCAGGAGGAGGAGCAAGGAACGTCTTGCTACTGTTGC
TAAGGGGGAAGCCACGGGGGCAGGCGTTAGCAGCGACAGTATTTTGCAGC
ATGTGGATGGTACGGTAGTGTCTCCTAGAACGACAAACTTAGCCACGACG
ACGCCCCGGTCTGGTACCCTTGCTCCTCCCGATGAGGGCGAGGAAGGGAA
GAAGCCGGAGGAGGGGGAGGAAGGTGGGTGGAAAGTGGGCCCTGAGGACT
TCACACCAATGTGTGTAATTGGCCAGGGAGCGTTTGGGCGTGTATTGCAA
GTGAGGAGTAAGCTTGATGACTGTATGTATGCAATGAAGGTTATCTCCAA
GAGGATGCTGAGGAAGAAGAACCATCTTTCGTACATGCGTGCAGAGCGTG
ATATCATGACCAAGATCGACTTCCCTTTTGTCGTGGGCCTTAAGTTCTCT
TTCCAGACGGAGGAAAAACTCTTCCTCATCATGGATTACCTCTCTGGAGG
GGAGCTCTTTTTCCACCTTAGAAAACATGGCTTAATTTTAGAAGATACCG
CCCGCTTTTATGTGGCAGAGATGGTACTGGCACTCGAGCACCTCCATGCC
AAGGGCATCATTCACAGAGACCTTAAACCAGAAAATGTGCTCCTGGGGAA
GGATGGACATTTGTGTTTGACTGATTTCGGTTTAGCTAAGGAACTGACAG
CCCCAACAGTGGGTGCGGAGAGAGAGGGAGATGAGGCAGCGGGGGAGGAG
GGGGGGAGGGCACGGACTGTGTGTGGGACGAATGAGTACATGTGTCCGGA
GATGATTTTGAAGAAGGGCTATGGTAAGGCGGCGGATTGGTGGAGTTTGG
GTGCGCTGATGTATGAGATGATGGCGGGACATGCTCCTTTTCGAGCTAAG
ACGGTGAAGGAGTTGAACAGGAAAATTCTGCATGAGAAGCTCTCCCTCCC
TCCCTTCCTCTCCTCAGAGGCACATGCTGTCCTCAAGGGGTTGCTCGAGA
GGAATGTCCAAAAGAGGTTGGGGGCGACCCGGAGTACGATGTTTGAGGTA
GGGGGGTGGCGGCATTGA
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protein sequence of NO15G01940.1

>NO15G01940.1-protein ID=NO15G01940.1-protein|Name=NO15G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
METQQRHQNVDEIPAVRTTSPLTVDTSLTGTAAKTITTLLTPHFENESGV
IGRSSRRRSKERLATVAKGEATGAGVSSDSILQHVDGTVVSPRTTNLATT
TPRSGTLAPPDEGEEGKKPEEGEEGGWKVGPEDFTPMCVIGQGAFGRVLQ
VRSKLDDCMYAMKVISKRMLRKKNHLSYMRAERDIMTKIDFPFVVGLKFS
FQTEEKLFLIMDYLSGGELFFHLRKHGLILEDTARFYVAEMVLALEHLHA
KGIIHRDLKPENVLLGKDGHLCLTDFGLAKELTAPTVGAEREGDEAAGEE
GGRARTVCGTNEYMCPEMILKKGYGKAADWWSLGALMYEMMAGHAPFRAK
TVKELNRKILHEKLSLPPFLSSEAHAVLKGLLERNVQKRLGATRSTMFEV
GGWRH*
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mRNA from alignment at chr15:542241..543458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01940.1 ID=NO15G01940.1|Name=NO15G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at chr15:542241..543458- (Nannochloropsis oceanica)
ATGGAGACACAGCAGCGGCACCAAAACGTTGATGAAATCCCTGCAGTTCG
CACCACCAGCCCCCTGACTGTCGATACATCCCTGACTGGCACGGCAGCCA
AGACTATTACCACCTTGTTGACGCCACATTTTGAGAACGAGAGTGGTGTC
ATCGGTAGGAGCAGCAGGAGGAGGAGCAAGGAACGTCTTGCTACTGTTGC
TAAGGGGGAAGCCACGGGGGCAGGCGTTAGCAGCGACAGTATTTTGCAGC
ATGTGGATGGTACGGTAGTGTCTCCTAGAACGACAAACTTAGCCACGACG
ACGCCCCGGTCTGGTACCCTTGCTCCTCCCGATGAGGGCGAGGAAGGGAA
GAAGCCGGAGGAGGGGGAGGAAGGTGGGTGGAAAGTGGGCCCTGAGGACT
TCACACCAATGTGTGTAATTGGCCAGGGAGCGTTTGGGCGTGTATTGCAA
GTGAGGAGTAAGCTTGATGACTGTATGTATGCAATGAAGGTTATCTCCAA
GAGGATGCTGAGGAAGAAGAACCATCTTTCGTACATGCGTGCAGAGCGTG
ATATCATGACCAAGATCGACTTCCCTTTTGTCGTGGGCCTTAAGTTCTCT
TTCCAGACGGAGGAAAAACTCTTCCTCATCATGGATTACCTCTCTGGAGG
GGAGCTCTTTTTCCACCTTAGAAAACATGGCTTAATTTTAGAAGATACCG
CCCGCTTTTATGTGGCAGAGATGGTACTGGCACTCGAGCACCTCCATGCC
AAGGGCATCATTCACAGAGACCTTAAACCAGAAAATGTGCTCCTGGGGAA
GGATGGACATTTGTGTTTGACTGATTTCGGTTTAGCTAAGGAACTGACAG
CCCCAACAGTGGGTGCGGAGAGAGAGGGAGATGAGGCAGCGGGGGAGGAG
GGGGGGAGGGCACGGACTGTGTGTGGGACGAATGAGTACATGTGTCCGGA
GATGATTTTGAAGAAGGGCTATGGTAAGGCGGCGGATTGGTGGAGTTTGG
GTGCGCTGATGTATGAGATGATGGCGGGACATGCTCCTTTTCGAGCTAAG
ACGGTGAAGGAGTTGAACAGGAAAATTCTGCATGAGAAGCTCTCCCTCCC
TCCCTTCCTCTCCTCAGAGGCACATGCTGTCCTCAAGGGGTTGCTCGAGA
GGAATGTCCAAAAGAGGTTGGGGGCGACCCGGAGTACGATGTTTGAGGTA
GGGGGGTGGCGGCATTGA
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Coding sequence (CDS) from alignment at chr15:542241..543458-

>NO15G01940.1 ID=NO15G01940.1|Name=NO15G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr15:542241..543458- (Nannochloropsis oceanica)
ATGGAGACACAGCAGCGGCACCAAAACGTTGATGAAATCCCTGCAGTTCG
CACCACCAGCCCCCTGACTGTCGATACATCCCTGACTGGCACGGCAGCCA
AGACTATTACCACCTTGTTGACGCCACATTTTGAGAACGAGAGTGGTGTC
ATCGGTAGGAGCAGCAGGAGGAGGAGCAAGGAACGTCTTGCTACTGTTGC
TAAGGGGGAAGCCACGGGGGCAGGCGTTAGCAGCGACAGTATTTTGCAGC
ATGTGGATGGTACGGTAGTGTCTCCTAGAACGACAAACTTAGCCACGACG
ACGCCCCGGTCTGGTACCCTTGCTCCTCCCGATGAGGGCGAGGAAGGGAA
GAAGCCGGAGGAGGGGGAGGAAGGTGGGTGGAAAGTGGGCCCTGAGGACT
TCACACCAATGTGTGTAATTGGCCAGGGAGCGTTTGGGCGTGTATTGCAA
GTGAGGAGTAAGCTTGATGACTGTATGTATGCAATGAAGGTTATCTCCAA
GAGGATGCTGAGGAAGAAGAACCATCTTTCGTACATGCGTGCAGAGCGTG
ATATCATGACCAAGATCGACTTCCCTTTTGTCGTGGGCCTTAAGTTCTCT
TTCCAGACGGAGGAAAAACTCTTCCTCATCATGGATTACCTCTCTGGAGG
GGAGCTCTTTTTCCACCTTAGAAAACATGGCTTAATTTTAGAAGATACCG
CCCGCTTTTATGTGGCAGAGATGGTACTGGCACTCGAGCACCTCCATGCC
AAGGGCATCATTCACAGAGACCTTAAACCAGAAAATGTGCTCCTGGGGAA
GGATGGACATTTGTGTTTGACTGATTTCGGTTTAGCTAAGGAACTGACAG
CCCCAACAGTGGGTGCGGAGAGAGAGGGAGATGAGGCAGCGGGGGAGGAG
GGGGGGAGGGCACGGACTGTGTGTGGGACGAATGAGTACATGTGTCCGGA
GATGATTTTGAAGAAGGGCTATGGTAAGGCGGCGGATTGGTGGAGTTTGG
GTGCGCTGATGTATGAGATGATGGCGGGACATGCTCCTTTTCGAGCTAAG
ACGGTGAAGGAGTTGAACAGGAAAATTCTGCATGAGAAGCTCTCCCTCCC
TCCCTTCCTCTCCTCAGAGGCACATGCTGTCCTCAAGGGGTTGCTCGAGA
GGAATGTCCAAAAGAGGTTGGGGGCGACCCGGAGTACGATGTTTGAGGTA
GGGGGGTGGCGGCATTGA
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Synonyms
Publications