NO15G01900.1, NO15G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01900.1
Unique NameNO15G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1757
Alignment locationchr15:533220..535487 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:533220..535487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO15G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01900NO15G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01900.1NO15G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01900.1.cds1NO15G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01900.1.cds2NO15G01900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01900.1.cds3NO15G01900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01900.1 ID=NO15G01900.1|Name=NO15G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
AACAGAAAAAAGACACACACCTGCATGCGCCTACAACGGCGGTGGCGACC
TCCGGTGGAGAAGGAGGAAGACGCAAAGGCATTGGCGTAGCGGGTGGTAT
GTTCGGCAAGGCGGGAAGTCTCAACCAAAAAGCAGCGCGAGCATTTACAA
ACAAGAGGCATCGATCGAAGTACGCCTCCCCCGCGCTCTGCCGTCTCCCG
CCCTCTTCCCTCACTCCTGCCAGAACAACAGCAACAGCAACAGCAGGACC
ACACCCGAAGCCAGCACCTGCGGCAGCAACAGCCGGCAACCATCACCACA
AACTGAAGCGCCACTTTCCTCGTCGCCCCCACCTCTCTTGTCGATACGCC
GAAAAGGCGGCGATAGCAGCAGTGTCTCCTATGACAATGTCTCTTGGTCT
TTTTCCGGGAAGTCCAAATGCTTTGGATAATCACACGACATACGTCCAAG
CTCAAGGCATCCTAGGGGCTGAAAACAATATTTATCATATGCTACGAGAA
GATCTCGCATCTCCACCAAGCCCAATTGAAGCCTCTTGGATCTCATTAGA
AAGAAGTAAAGAAGAAAGAGCAGGGGCTGCCGCCTCTGCCGCGGAATTTG
CGGCTCTAGAAGCCGACCAAATTTCATGTACATTTAAAGCCAAGAAGCGA
ACGGGCAGCATGGGTGGATGCAGCAGTAATTGCAGAGATCTTTTCCAAGT
GGCCATTTATGCGGGCAACACCATCACCAGCAGCAGCACCAGCAGTGGCA
CCACCGGCAAGAACATAGACGACTTTCCCGTGTCGGGCGGCTTGAATGCC
CTTCTTCAGGTTTGCTGACGGGCCACACCATCCTCTCGCCGACAATAGTA
ACAACATCAAATACATCTTCTTGTACTTTTTTCCTTCTCCTCCTCCTCCT
TCTCCTCCTGCCTCCATTCACTTTCCTTTCCTCCCCCCCCCCCCCCCCCA
AGTACGTCCTTGGCCTCCATGGGATATTACACCCTATCTTTCGACACCGC
CCATGGACTCAAAGTCCGCCTCCCCGCCCGCGAGAATCTCGCCCCAGTAG
ATTTTTCCCGCCTCTCTCCTCGTGATTTATCTATGATCGCGTTAGGAACG
AGAGGGAAGAGCAGTGGTAGCACCAGCACCAGCAGTTGTAGTGGTGGCAG
TAGTAGTTATAGCACGACTAGTGATACAAGTGCAAATAACAGTAGTAATA
GAAGCAGTTGTAATAATAGCTGCAATAGTAATAATAGATGGAGGGGAGGA
AATAGTGTCGCTGCGTAGAGGATGGTTAGGGTTGGTCGGAGGAGTAGAAA
ATGTAAGAAAGTGGGGGGTTGAGTGTGGCAACAGCAGCAGCACCAGCAGC
AGCATTGGGAAAACGACGGGGGCCAGTGGTGGAGCAGATGGGGAAAGTTG
GTGAGAATGCAGTTTTTCTGGATTTTCTTATGCCTATTTCGGTTTTTCAG
GCGTTAGGTGTGGCGATAATGGCGTATGAGGCGTGAAGCTTGGGAGAGGG
AGGGGGGGGCGAGGGATGGTGGTAAGATGTTCTGTGCTGTAAATAGAGAA
AGAATGTGTGTGTAAGTGTGCAATGACCATAGAACACGCATAGCGGTGGC
CAAGACTCCCCTTCGCGATTCCCTCGGTGTGCTGACACTTTTTCGTGAAG
GAACACTTTTTCGTGAAGGATGTCAAGGGAGTTTGAATTAGTTGTAGGGA
GCAGGCAGGCACTCAAGACAAAAACACAGCACCCTCAAAATGAACCAGAG
GCACCAC
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protein sequence of NO15G01900.1

>NO15G01900.1-protein ID=NO15G01900.1-protein|Name=NO15G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MFGKAGSLNQKAARAFTNKRHRSKYASPALCRLPPSSLTPARTTATATAG
PHPKPAPAAATAGNHHHKLKRHFPRRPHLSCRYAEKAAIAAVSPMTMSLG
LFPGSPNALDNHTTYVQAQGILGAENNIYHMLREDLASPPSPIEASWISL
ERSKEERAGAAASAAEFAALEADQISCTFKAKKRTGSMGGCSSNCRDLFQ
VAIYAGNTITSSSTSSGTTGKNIDDFPVSGGLNALLQVC*
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mRNA from alignment at chr15:533220..535487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01900.1 ID=NO15G01900.1|Name=NO15G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp|location=Sequence derived from alignment at chr15:533220..535487- (Nannochloropsis oceanica)
AACAGAAAAAAGACACACACCTGCATGCGCCTACAACGGCGGTGGCGACC
TCCGGTGGAGAAGGAGGAAGACGCAAAGGCATTGGCGTAGCGGGTGGTAT
GTTCGGCAAGGCGGGAAGTCTCAACCAAAAAGCAGCGCGAGCATTTACAA
ACAAGAGGTACAGTATTCACTTTTATTCTCCACTATGGACAAACGTACAA
GCGATCTGGTAGATCAGCTGGAGCGTGGTAGCTCTGACCTTCGGACCGCC
TCCATCCTTCCTATCCTGCCTCAACTCGCCCCGGACACCTCTCCCTCAGT
CCCCTTTTCCTACCTACGAAGATGTCACGTACATGCCCAAGGGCCGACAC
GTGCAGAGTTAGCGCGCGAAGAAGGAATCACCAATAGGCAATGAGATCAG
GCCAGGCACTGCGGCAAAATTCTCGCTCAGCGCGGCATCTTGTGAGAAGA
TTTCCCTCTTATGAAGCTTCTGTCCTTCTGCCCTACTACCTCCCAGGCAT
CGATCGAAGTACGCCTCCCCCGCGCTCTGCCGTCTCCCGCCCTCTTCCCT
CACTCCTGCCAGAACAACAGCAACAGCAACAGCAGGACCACACCCGAAGC
CAGCACCTGCGGCAGCAACAGCCGGCAACCATCACCACAAACTGAAGCGC
CACTTTCCTCGTCGCCCCCACCTCTCTTGTCGATACGCCGAAAAGGCGGC
GATAGCAGCAGTGTCTCCTATGACAATGTCTCTTGGTCTTTTTCCGGGAA
GTCCAAATGCTTTGGATAATCACACGACATACGTCCAAGCTCAAGGTTTG
AGCTTGGGCATTCTTTTTCTCCATCCATTCTTCTTCATTGATTTTTCTCA
AGAGAGGAACTTCTTCGGCTATAATGCATTTATATGTTACTCACCCACAT
GCCCTCTCTCCCCCTCTTCCTCCCTCCCACCCACACTGTATCAACCGTCT
TTGCCTCTACCTCGAAGGCATCCTAGGGGCTGAAAACAATATTTATCATA
TGCTACGAGAAGATCTCGCATCTCCACCAAGCCCAATTGAAGCCTCTTGG
ATCTCATTAGAAAGAAGTAAAGAAGAAAGAGCAGGGGCTGCCGCCTCTGC
CGCGGAATTTGCGGCTCTAGAAGCCGACCAAATTTCATGTACATTTAAAG
CCAAGAAGCGAACGGGCAGCATGGGTGGATGCAGCAGTAATTGCAGAGAT
CTTTTCCAAGTGGCCATTTATGCGGGCAACACCATCACCAGCAGCAGCAC
CAGCAGTGGCACCACCGGCAAGAACATAGACGACTTTCCCGTGTCGGGCG
GCTTGAATGCCCTTCTTCAGGTTTGCTGACGGGCCACACCATCCTCTCGC
CGACAATAGTAACAACATCAAATACATCTTCTTGTACTTTTTTCCTTCTC
CTCCTCCTCCTTCTCCTCCTGCCTCCATTCACTTTCCTTTCCTCCCCCCC
CCCCCCCCCCAAGTACGTCCTTGGCCTCCATGGGATATTACACCCTATCT
TTCGACACCGCCCATGGACTCAAAGTCCGCCTCCCCGCCCGCGAGAATCT
CGCCCCAGTAGATTTTTCCCGCCTCTCTCCTCGTGATTTATCTATGATCG
CGTTAGGAACGAGAGGGAAGAGCAGTGGTAGCACCAGCACCAGCAGTTGT
AGTGGTGGCAGTAGTAGTTATAGCACGACTAGTGATACAAGTGCAAATAA
CAGTAGTAATAGAAGCAGTTGTAATAATAGCTGCAATAGTAATAATAGAT
GGAGGGGAGGAAATAGTGTCGCTGCGTAGAGGATGGTTAGGGTTGGTCGG
AGGAGTAGAAAATGTAAGAAAGTGGGGGGTTGAGTGTGGCAACAGCAGCA
GCACCAGCAGCAGCATTGGGAAAACGACGGGGGCCAGTGGTGGAGCAGAT
GGGGAAAGTTGGTGAGAATGCAGTTTTTCTGGATTTTCTTATGCCTATTT
CGGTTTTTCAGGCGTTAGGTGTGGCGATAATGGCGTATGAGGCGTGAAGC
TTGGGAGAGGGAGGGGGGGGCGAGGGATGGTGGTAAGATGTTCTGTGCTG
TAAATAGAGAAAGAATGTGTGTGTAAGTGTGCAATGACCATAGAACACGC
ATAGCGGTGGCCAAGACTCCCCTTCGCGATTCCCTCGGTGTGCTGACACT
TTTTCGTGAAGGAACACTTTTTCGTGAAGGATGTCAAGGGAGTTTGAATT
AGTTGTAGGGAGCAGGCAGGCACTCAAGACAAAAACACAGCACCCTCAAA
ATGAACCAGAGGCACCAC
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Coding sequence (CDS) from alignment at chr15:533220..535487-

>NO15G01900.1 ID=NO15G01900.1|Name=NO15G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr15:533220..535487- (Nannochloropsis oceanica)
ATGTTCGGCAAGGCGGGAAGTCTCAACCAAAAAGCAGCGCGAGCATTTAC
AAACAAGAGGCATCGATCGAAGTACGCCTCCCCCGCGCTCTGCCGTCTCC
CGCCCTCTTCCCTCACTCCTGCCAGAACAACAGCAACAGCAACAGCAGGA
CCACACCCGAAGCCAGCACCTGCGGCAGCAACAGCCGGCAACCATCACCA
CAAACTGAAGCGCCACTTTCCTCGTCGCCCCCACCTCTCTTGTCGATACG
CCGAAAAGGCGGCGATAGCAGCAGTGTCTCCTATGACAATGTCTCTTGGT
CTTTTTCCGGGAAGTCCAAATGCTTTGGATAATCACACGACATACGTCCA
AGCTCAAGGCATCCTAGGGGCTGAAAACAATATTTATCATATGCTACGAG
AAGATCTCGCATCTCCACCAAGCCCAATTGAAGCCTCTTGGATCTCATTA
GAAAGAAGTAAAGAAGAAAGAGCAGGGGCTGCCGCCTCTGCCGCGGAATT
TGCGGCTCTAGAAGCCGACCAAATTTCATGTACATTTAAAGCCAAGAAGC
GAACGGGCAGCATGGGTGGATGCAGCAGTAATTGCAGAGATCTTTTCCAA
GTGGCCATTTATGCGGGCAACACCATCACCAGCAGCAGCACCAGCAGTGG
CACCACCGGCAAGAACATAGACGACTTTCCCGTGTCGGGCGGCTTGAATG
CCCTTCTTCAGGTTTGCTGA
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Synonyms
Publications