NO15G01830.1, NO15G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01830.1
Unique NameNO15G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1842
Alignment locationchr15:520539..522380 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:520539..522380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01830.1 vs.
Match: EWM22395.1 (homodimeric type [Nannochloropsis gaditana])

HSP 1 Score: 592.4 bits (1526), Expect = 9.000e-166
Identity = 286/347 (82.42%), Postives = 319/347 (91.93%), Query Frame = 0 
Query:    1 MATTALTITKPDDFHHHFRDGEALEALVPLVASRFRRAIAMPNLKPPVTTTAQALAYRERLMAAVPAGVDFTPLMTLYLTDQTTAEEIYAARDSGAVYAVKLYPAGATTNSDSGVTDMQTIRPALEAMAQVGMPLLVHSEVTDANVDIFDREAAFVVSVLGPLVRENPGLKVVMEHITTSEGVDFVMACGPNVGATITPQHLLYNRNAIFQGGLQPHMYCLPVLKHERHRQALLRAIASGSPKFFLGTDSAPHPKTAKETSCGCAGCFSAFAGLELYAEVFESLGVMDKFESFTSKNGAAFYGLPENQEKLTLRREPWTVPATYPLGKDVAVVPLKAGEEMAWAVKQ 348
            M T  LTI KPDDFHHHFRDG+AL+++VPLVASRFRRAIAMPNLKPPVTTT QA+AYRER++AA+PAG  FTPLMTLYLTD+TTA+EIYAAR SG V+AVKLYPAGATTNSDSGVTDMQ IRPAL+AMA+VG+PLLVHSEVTDA+VD+F REAAF+V +L PLV ENP LKVVMEHITTSEGVDFVMACG NV ATITPQHL+YNRNAIFQGGLQPH+YCLPVLKHERHRQALL AIASGS KFFLGTDSAPHP+TAKE++ GCAGCFSAFAGLELYAEVFES+G +DKFE+FTSKNGAAFYGL +N EKLTL+R+ W VP TYPLG+D  VVPL+AG+EMAW+VKQ
Sbjct:   63 MVTNELTIIKPDDFHHHFRDGDALKSVVPLVASRFRRAIAMPNLKPPVTTTTQAVAYRERILAALPAGAIFTPLMTLYLTDRTTADEIYAARASGIVFAVKLYPAGATTNSDSGVTDMQAIRPALKAMAEVGIPLLVHSEVTDADVDVFHREAAFIVRILQPLVDENPDLKVVMEHITTSEGVDFVMACGSNVAATITPQHLMYNRNAIFQGGLQPHVYCLPVLKHERHRQALLGAIASGSSKFFLGTDSAPHPQTAKESTSGCAGCFSAFAGLELYAEVFESIGALDKFEAFTSKNGAAFYGLADNTEKLTLQRKAWRVPMTYPLGQDTVVVPLRAGQEMAWSVKQ 409
The following BLAST results are available for this feature:
BLAST of NO15G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22395.19.000e-16682.42homodimeric type [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01830NO15G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01830.1NO15G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01830.1.cds1NO15G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01830.1 ID=NO15G01830.1|Name=NO15G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp
CGTTGAGGGGGGCGGAAAACGAGTGTCTGTTCTCCTCTCCGCTCTTCCTG
TTGTCAGTCACCTCGGAGAGAGGCGTAAATTTGCCTCATGTATCGACCCA
TGAGAGGTTGTTTTAAATAAATGGTAATTATCTTCAAATTATAACATGTT
AGAACGCCAAATAACCTTAGAGCTTGGATTGCCTGGCGCCACTGATACGG
CCGTGACATGCATGAGGGGGAGCAAGAATTGGGGAAGAAATTTTCCGACT
TAAAGCCCCAAAAGACTGGCAAATTTTTGTCGTCTTGCCTTGAATTGATT
ATCTCTTAATTTAGGAGCTCGTTTTCTCATTTTGTTTAATGTTTTGACCA
TTCCCAGGTGTGCTCTTGCTTGCCCGAGGGAACCCGCCGCCCTCCTCCAA
GCGAGCCTCAGTGTTACACACCAACATGAAGACCAACCAGGCCCGCATTC
ACAACACATTAAACATATCTTGTTAAACTGTTTACTAACTCCAAAGTATT
TCAATAGCTTGCGTGAACAGCTTTTGGGTTGCGGAAAGGGCACGAGGATG
GGGAGGTTGGATGACCGCTCAACGCTTCGCCATTTTGCGCCGGGACACTC
TTGCACACGTAATGACACTCACAGCTACATGTCTTCCCCTTTCCTTCATG
TACAGTCTGTCGCCCGTCGCTTGTTCATCGCTTCCCGTGCTCGTCTCTCT
GTAGATCAATCTCTTTCCCACAAATCTTACCACCCAGCAGCCATCACTTA
CTATGGCGACTACCGCACTTACAATCACCAAGCCCGACGACTTTCACCAT
CACTTCCGAGATGGAGAAGCCTTGGAGGCTCTTGTACCCTTAGTTGCCTC
TCGATTTCGCCGCGCGATCGCGATGCCCAACCTGAAGCCCCCCGTCACCA
CCACAGCCCAGGCCCTTGCTTATCGGGAGCGCCTGATGGCCGCCGTGCCA
GCGGGCGTAGACTTCACGCCCTTGATGACACTCTACCTCACAGACCAAAC
TACAGCGGAGGAGATCTATGCCGCCCGAGACTCGGGCGCTGTGTACGCCG
TCAAGTTGTACCCCGCGGGCGCTACGACCAACTCGGACTCGGGCGTCACA
GACATGCAGACTATCCGCCCCGCGCTTGAGGCCATGGCCCAGGTGGGCAT
GCCCTTGCTCGTGCATAGTGAAGTAACGGATGCAAATGTGGACATTTTTG
ACCGTGAGGCTGCGTTTGTGGTGAGTGTTTTGGGACCCTTGGTAAGGGAA
AATCCAGGCTTGAAGGTGGTGATGGAGCATATTACCACTTCGGAGGGTGT
GGACTTTGTCATGGCGTGCGGACCCAACGTGGGGGCCACTATTACGCCGC
AGCACCTTTTATACAATCGTAATGCCATCTTCCAAGGTGGGCTTCAACCT
CATATGTATTGCTTGCCTGTTCTGAAGCACGAGCGGCACCGTCAAGCCTT
GCTCCGCGCGATTGCTAGTGGCTCGCCTAAATTCTTCTTAGGCACGGATA
GCGCACCGCATCCCAAGACTGCTAAGGAGACTTCGTGTGGATGCGCGGGT
TGTTTCTCGGCATTCGCAGGACTGGAGTTATATGCGGAAGTGTTTGAGTC
CTTGGGCGTGATGGACAAGTTCGAATCATTCACGTCCAAGAACGGTGCGG
CATTTTACGGCTTGCCCGAGAACCAAGAGAAGCTGACATTGCGCAGAGAA
CCGTGGACTGTTCCTGCTACGTACCCACTGGGCAAAGACGTTGCGGTAGT
TCCCTTGAAGGCTGGAGAAGAAATGGCGTGGGCCGTAAAACAGGAATAAA
CAAATACGACGAGATGCTCTTTCGAAAGAAACAAGAACACAT
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protein sequence of NO15G01830.1

>NO15G01830.1-protein ID=NO15G01830.1-protein|Name=NO15G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MATTALTITKPDDFHHHFRDGEALEALVPLVASRFRRAIAMPNLKPPVTT
TAQALAYRERLMAAVPAGVDFTPLMTLYLTDQTTAEEIYAARDSGAVYAV
KLYPAGATTNSDSGVTDMQTIRPALEAMAQVGMPLLVHSEVTDANVDIFD
REAAFVVSVLGPLVRENPGLKVVMEHITTSEGVDFVMACGPNVGATITPQ
HLLYNRNAIFQGGLQPHMYCLPVLKHERHRQALLRAIASGSPKFFLGTDS
APHPKTAKETSCGCAGCFSAFAGLELYAEVFESLGVMDKFESFTSKNGAA
FYGLPENQEKLTLRREPWTVPATYPLGKDVAVVPLKAGEEMAWAVKQE*
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mRNA from alignment at chr15:520539..522380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01830.1 ID=NO15G01830.1|Name=NO15G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp|location=Sequence derived from alignment at chr15:520539..522380+ (Nannochloropsis oceanica)
CGTTGAGGGGGGCGGAAAACGAGTGTCTGTTCTCCTCTCCGCTCTTCCTG
TTGTCAGTCACCTCGGAGAGAGGCGTAAATTTGCCTCATGTATCGACCCA
TGAGAGGTTGTTTTAAATAAATGGTAATTATCTTCAAATTATAACATGTT
AGAACGCCAAATAACCTTAGAGCTTGGATTGCCTGGCGCCACTGATACGG
CCGTGACATGCATGAGGGGGAGCAAGAATTGGGGAAGAAATTTTCCGACT
TAAAGCCCCAAAAGACTGGCAAATTTTTGTCGTCTTGCCTTGAATTGATT
ATCTCTTAATTTAGGAGCTCGTTTTCTCATTTTGTTTAATGTTTTGACCA
TTCCCAGGTGTGCTCTTGCTTGCCCGAGGGAACCCGCCGCCCTCCTCCAA
GCGAGCCTCAGTGTTACACACCAACATGAAGACCAACCAGGCCCGCATTC
ACAACACATTAAACATATCTTGTTAAACTGTTTACTAACTCCAAAGTATT
TCAATAGCTTGCGTGAACAGCTTTTGGGTTGCGGAAAGGGCACGAGGATG
GGGAGGTTGGATGACCGCTCAACGCTTCGCCATTTTGCGCCGGGACACTC
TTGCACACGTAATGACACTCACAGCTACATGTCTTCCCCTTTCCTTCATG
TACAGTCTGTCGCCCGTCGCTTGTTCATCGCTTCCCGTGCTCGTCTCTCT
GTAGATCAATCTCTTTCCCACAAATCTTACCACCCAGCAGCCATCACTTA
CTATGGCGACTACCGCACTTACAATCACCAAGCCCGACGACTTTCACCAT
CACTTCCGAGATGGAGAAGCCTTGGAGGCTCTTGTACCCTTAGTTGCCTC
TCGATTTCGCCGCGCGATCGCGATGCCCAACCTGAAGCCCCCCGTCACCA
CCACAGCCCAGGCCCTTGCTTATCGGGAGCGCCTGATGGCCGCCGTGCCA
GCGGGCGTAGACTTCACGCCCTTGATGACACTCTACCTCACAGACCAAAC
TACAGCGGAGGAGATCTATGCCGCCCGAGACTCGGGCGCTGTGTACGCCG
TCAAGTTGTACCCCGCGGGCGCTACGACCAACTCGGACTCGGGCGTCACA
GACATGCAGACTATCCGCCCCGCGCTTGAGGCCATGGCCCAGGTGGGCAT
GCCCTTGCTCGTGCATAGTGAAGTAACGGATGCAAATGTGGACATTTTTG
ACCGTGAGGCTGCGTTTGTGGTGAGTGTTTTGGGACCCTTGGTAAGGGAA
AATCCAGGCTTGAAGGTGGTGATGGAGCATATTACCACTTCGGAGGGTGT
GGACTTTGTCATGGCGTGCGGACCCAACGTGGGGGCCACTATTACGCCGC
AGCACCTTTTATACAATCGTAATGCCATCTTCCAAGGTGGGCTTCAACCT
CATATGTATTGCTTGCCTGTTCTGAAGCACGAGCGGCACCGTCAAGCCTT
GCTCCGCGCGATTGCTAGTGGCTCGCCTAAATTCTTCTTAGGCACGGATA
GCGCACCGCATCCCAAGACTGCTAAGGAGACTTCGTGTGGATGCGCGGGT
TGTTTCTCGGCATTCGCAGGACTGGAGTTATATGCGGAAGTGTTTGAGTC
CTTGGGCGTGATGGACAAGTTCGAATCATTCACGTCCAAGAACGGTGCGG
CATTTTACGGCTTGCCCGAGAACCAAGAGAAGCTGACATTGCGCAGAGAA
CCGTGGACTGTTCCTGCTACGTACCCACTGGGCAAAGACGTTGCGGTAGT
TCCCTTGAAGGCTGGAGAAGAAATGGCGTGGGCCGTAAAACAGGAATAAA
CAAATACGACGAGATGCTCTTTCGAAAGAAACAAGAACACAT
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Coding sequence (CDS) from alignment at chr15:520539..522380+

>NO15G01830.1 ID=NO15G01830.1|Name=NO15G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr15:520539..522380+ (Nannochloropsis oceanica)
ATGGCGACTACCGCACTTACAATCACCAAGCCCGACGACTTTCACCATCA
CTTCCGAGATGGAGAAGCCTTGGAGGCTCTTGTACCCTTAGTTGCCTCTC
GATTTCGCCGCGCGATCGCGATGCCCAACCTGAAGCCCCCCGTCACCACC
ACAGCCCAGGCCCTTGCTTATCGGGAGCGCCTGATGGCCGCCGTGCCAGC
GGGCGTAGACTTCACGCCCTTGATGACACTCTACCTCACAGACCAAACTA
CAGCGGAGGAGATCTATGCCGCCCGAGACTCGGGCGCTGTGTACGCCGTC
AAGTTGTACCCCGCGGGCGCTACGACCAACTCGGACTCGGGCGTCACAGA
CATGCAGACTATCCGCCCCGCGCTTGAGGCCATGGCCCAGGTGGGCATGC
CCTTGCTCGTGCATAGTGAAGTAACGGATGCAAATGTGGACATTTTTGAC
CGTGAGGCTGCGTTTGTGGTGAGTGTTTTGGGACCCTTGGTAAGGGAAAA
TCCAGGCTTGAAGGTGGTGATGGAGCATATTACCACTTCGGAGGGTGTGG
ACTTTGTCATGGCGTGCGGACCCAACGTGGGGGCCACTATTACGCCGCAG
CACCTTTTATACAATCGTAATGCCATCTTCCAAGGTGGGCTTCAACCTCA
TATGTATTGCTTGCCTGTTCTGAAGCACGAGCGGCACCGTCAAGCCTTGC
TCCGCGCGATTGCTAGTGGCTCGCCTAAATTCTTCTTAGGCACGGATAGC
GCACCGCATCCCAAGACTGCTAAGGAGACTTCGTGTGGATGCGCGGGTTG
TTTCTCGGCATTCGCAGGACTGGAGTTATATGCGGAAGTGTTTGAGTCCT
TGGGCGTGATGGACAAGTTCGAATCATTCACGTCCAAGAACGGTGCGGCA
TTTTACGGCTTGCCCGAGAACCAAGAGAAGCTGACATTGCGCAGAGAACC
GTGGACTGTTCCTGCTACGTACCCACTGGGCAAAGACGTTGCGGTAGTTC
CCTTGAAGGCTGGAGAAGAAATGGCGTGGGCCGTAAAACAGGAATAA
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Synonyms
Publications