NO15G01790.1, NO15G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01790.1
Unique NameNO15G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1902
Alignment locationchr15:511250..513151 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:511250..513151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01790.1 vs.
Match: EWM22391.1 (hypothetical protein Naga_100067g3 [Nannochloropsis gaditana])

HSP 1 Score: 828.6 bits (2139), Expect = 1.400e-236
Identity = 438/600 (73.00%), Postives = 495/600 (82.50%), Query Frame = 0 
Query:   18 MAALVLAFLPSESWAFRLSAPLRPLSFVPFSPFTSSTPSAMLQDTQ--------RNRLCTIHIWPHSSRRPKTQLGAGNLPQAEQLAIPPPEKVLAAVEKAGGRVTVQDVAALAGVDLLTAQKGLVKLAALVEGDLEVGKDGDLVYNFPRNFRTALRTRSITQQAKELWIKVWPSLFYATRVSFGLCLVLSIVLVFATITFAGSASQEGDRDDDRRRERGGGFGGGMGMYFGPSPFDFFMYRPYGYYYGYGGQRQRGRDEGAPVEMGFLESCFSYIFGDGNPNVGLEEVRYTEIAGVIRRSGGAVVAEQLAPYLDVPAPKDPTGYAMSGGGPLTAVVDESFVLPVLTRLNGRPEVTAEGEIVYVFPDLMTTAAAPGGEGGREMLNANWARQERVDEEVRGYQGLTAFELREALQAKRVPVQDCFDKASLLERLKGFLLSAPSTAQAVGTASYLEENPIPFSLAPGTNRLFAGILGVANLGGAIVLGDVLRNYASVYGANTPLPGILGLSQALYPALLVYAVGFNLIPFLRSRWVNAKNKEILQRNEARQAWAVILERAVGPLYEKILSARHYRSKMKVVRKEDMTYSSSGSMAERQGMDK 610
            ++ L +AF+P  + AFR      PL   P     +++PS  +   Q        ++ LC+ +      RR +T+LG G L  +EQL IPPPEK+LAAVEKAGGRVTVQDVAALAG DL  AQKGLVKLAALVEGDLEVGKDGDLVYNFPRNFRTALRTRS TQQAKELW+K+WPSLFY TRVSFGLCL+LSIVLVFATI FAGSA+Q GDR+DDRRR+RGG FGGGMGMYFGPSPFDFF YRPYGYYY  G Q  RGR EG P EMGFLESCFSYIFGDG+PN GLEE RY EIAGVIRR+GGAVVAEQLAPYLDVPAP DPT YA  GGG LTAVVDESFVLP+LTRLNGRPEVT+EG+I+YVFP+ MT+A   G E GRE L+A WARQ RVDEEVR YQGL+A E+R+AL  KRVPVQDCFDKASLLERLKGFLLSAPSTAQA+G A YL E P+PFSLAP TNR+FAGILGVANLGGAIVLGD+L  Y+++YG +T LPG+LGLSQALYPAL+VYAVGFNLIPFLRSRW+N KN EI +RNEARQ+WA IL RAVGPLYEKIL+ARHYRS +KV++KED+ Y+S  S+AE+   +K
Sbjct:   16 ISVLGVAFMPGATRAFR-----PPLLGPPLRAPEATSPSVSILTHQFPERRAWSKHALCSAY--QPFDRRSRTRLGLGTLA-SEQLMIPPPEKILAAVEKAGGRVTVQDVAALAGEDLAVAQKGLVKLAALVEGDLEVGKDGDLVYNFPRNFRTALRTRSFTQQAKELWLKLWPSLFYVTRVSFGLCLILSIVLVFATIAFAGSATQGGDREDDRRRDRGG-FGGGMGMYFGPSPFDFFYYRPYGYYYATGSQG-RGR-EGEPAEMGFLESCFSYIFGDGDPNAGLEEERYREIAGVIRRNGGAVVAEQLAPYLDVPAPPDPTAYATGGGGALTAVVDESFVLPILTRLNGRPEVTSEGDIIYVFPEFMTSAVEEGRERGREALDAGWARQVRVDEEVRQYQGLSASEIRQALLVKRVPVQDCFDKASLLERLKGFLLSAPSTAQALGEAPYLSEQPVPFSLAPTTNRVFAGILGVANLGGAIVLGDILSKYSAMYG-STGLPGLLGLSQALYPALIVYAVGFNLIPFLRSRWLNLKNAEIARRNEARQSWAGILGRAVGPLYEKILAARHYRSNLKVIKKEDVLYTSGKSVAEQSNREK 603
The following BLAST results are available for this feature:
BLAST of NO15G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22391.11.400e-23673.00hypothetical protein Naga_100067g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01790NO15G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01790.1NO15G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01790.1.cds1NO15G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01790.1 ID=NO15G01790.1|Name=NO15G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
ATGCCAAGAAGATCGCGAAAGCTGCAGCTGGCTGCAACCGCAGCGCTGCT
AATGGCTGCCCTTGTCTTGGCTTTTCTGCCTTCCGAGTCCTGGGCGTTTA
GACTGTCAGCGCCGCTACGCCCCCTCTCCTTTGTTCCGTTTTCCCCCTTC
ACCTCCTCCACCCCGTCAGCAATGCTGCAGGACACCCAGCGAAATCGTCT
CTGCACCATACATATCTGGCCTCACTCCTCTCGTCGGCCGAAAACGCAAC
TCGGCGCAGGCAACTTGCCTCAAGCAGAACAGCTCGCCATCCCCCCTCCA
GAGAAGGTCCTCGCCGCCGTCGAAAAAGCCGGCGGTCGAGTCACGGTTCA
AGACGTCGCAGCGTTGGCCGGTGTCGACCTCTTAACTGCGCAGAAGGGGC
TGGTCAAGCTGGCGGCGCTGGTGGAGGGTGATCTGGAAGTGGGGAAGGAT
GGAGATTTGGTTTACAACTTCCCGAGGAATTTTCGGACTGCTCTGAGGAC
ACGATCGATTACGCAGCAAGCAAAGGAGCTTTGGATTAAGGTATGGCCGT
CGTTGTTTTACGCAACAAGGGTGTCTTTTGGTTTGTGTTTAGTGTTGTCG
ATCGTGTTGGTCTTTGCAACCATTACCTTTGCGGGGTCCGCGTCGCAAGA
GGGAGATCGCGACGATGACCGAAGGAGGGAGAGAGGGGGAGGGTTCGGAG
GAGGGATGGGAATGTACTTTGGGCCTAGCCCGTTTGACTTTTTTATGTAT
CGGCCGTATGGTTATTACTACGGCTATGGAGGGCAGAGGCAGAGAGGAAG
AGATGAGGGGGCGCCGGTGGAGATGGGGTTTTTGGAGAGTTGTTTTTCAT
ACATTTTTGGGGATGGAAATCCAAATGTGGGGCTGGAGGAGGTGAGGTAC
ACGGAGATTGCGGGTGTCATAAGACGGAGTGGAGGAGCAGTGGTGGCGGA
GCAGCTAGCACCTTATCTTGATGTGCCAGCGCCGAAGGATCCCACGGGCT
ATGCGATGTCGGGAGGAGGGCCTCTGACTGCGGTGGTAGACGAATCGTTT
GTCTTGCCGGTTCTGACAAGATTGAATGGTCGGCCGGAAGTCACGGCAGA
GGGAGAGATTGTGTATGTTTTCCCTGACTTGATGACCACGGCGGCGGCCC
CGGGGGGAGAGGGAGGAAGGGAGATGCTGAATGCGAACTGGGCGAGGCAA
GAGAGGGTGGATGAGGAGGTGAGGGGGTATCAGGGGTTGACGGCATTTGA
GTTGAGGGAAGCTTTGCAAGCGAAGCGGGTCCCAGTGCAAGATTGCTTTG
ACAAAGCGTCGTTGCTTGAACGACTCAAAGGCTTTCTTCTCTCCGCTCCT
TCGACTGCACAAGCTGTTGGCACTGCTTCCTACCTCGAAGAGAATCCCAT
TCCCTTCTCACTCGCCCCTGGGACCAACCGATTATTTGCTGGTATTTTGG
GGGTGGCAAATTTGGGGGGGGCGATCGTGTTAGGCGATGTATTGAGAAAC
TATGCGTCTGTCTACGGAGCAAACACCCCCTTGCCGGGTATCCTTGGGTT
GAGCCAAGCCCTCTACCCCGCCCTCCTTGTGTACGCGGTCGGATTCAACC
TGATCCCTTTCTTGCGTTCTCGGTGGGTCAACGCGAAGAATAAAGAAATT
TTACAGCGAAACGAGGCAAGGCAAGCATGGGCGGTGATTTTGGAGAGAGC
TGTTGGGCCACTGTACGAGAAAATTTTATCGGCAAGACACTACCGATCTA
AAATGAAGGTGGTGAGGAAAGAGGATATGACGTACAGTAGCTCGGGGAGT
ATGGCAGAGCGGCAGGGAATGGATAAGATGACAAAGGATTTAGAGGATTT
TGATAGGCAATTTGAGGAAAAAGATATGAAGAGGGGAGGAAAGACGTTGT
AG
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protein sequence of NO15G01790.1

>NO15G01790.1-protein ID=NO15G01790.1-protein|Name=NO15G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=634bp
MPRRSRKLQLAATAALLMAALVLAFLPSESWAFRLSAPLRPLSFVPFSPF
TSSTPSAMLQDTQRNRLCTIHIWPHSSRRPKTQLGAGNLPQAEQLAIPPP
EKVLAAVEKAGGRVTVQDVAALAGVDLLTAQKGLVKLAALVEGDLEVGKD
GDLVYNFPRNFRTALRTRSITQQAKELWIKVWPSLFYATRVSFGLCLVLS
IVLVFATITFAGSASQEGDRDDDRRRERGGGFGGGMGMYFGPSPFDFFMY
RPYGYYYGYGGQRQRGRDEGAPVEMGFLESCFSYIFGDGNPNVGLEEVRY
TEIAGVIRRSGGAVVAEQLAPYLDVPAPKDPTGYAMSGGGPLTAVVDESF
VLPVLTRLNGRPEVTAEGEIVYVFPDLMTTAAAPGGEGGREMLNANWARQ
ERVDEEVRGYQGLTAFELREALQAKRVPVQDCFDKASLLERLKGFLLSAP
STAQAVGTASYLEENPIPFSLAPGTNRLFAGILGVANLGGAIVLGDVLRN
YASVYGANTPLPGILGLSQALYPALLVYAVGFNLIPFLRSRWVNAKNKEI
LQRNEARQAWAVILERAVGPLYEKILSARHYRSKMKVVRKEDMTYSSSGS
MAERQGMDKMTKDLEDFDRQFEEKDMKRGGKTL*
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mRNA from alignment at chr15:511250..513151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01790.1 ID=NO15G01790.1|Name=NO15G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp|location=Sequence derived from alignment at chr15:511250..513151+ (Nannochloropsis oceanica)
ATGCCAAGAAGATCGCGAAAGCTGCAGCTGGCTGCAACCGCAGCGCTGCT
AATGGCTGCCCTTGTCTTGGCTTTTCTGCCTTCCGAGTCCTGGGCGTTTA
GACTGTCAGCGCCGCTACGCCCCCTCTCCTTTGTTCCGTTTTCCCCCTTC
ACCTCCTCCACCCCGTCAGCAATGCTGCAGGACACCCAGCGAAATCGTCT
CTGCACCATACATATCTGGCCTCACTCCTCTCGTCGGCCGAAAACGCAAC
TCGGCGCAGGCAACTTGCCTCAAGCAGAACAGCTCGCCATCCCCCCTCCA
GAGAAGGTCCTCGCCGCCGTCGAAAAAGCCGGCGGTCGAGTCACGGTTCA
AGACGTCGCAGCGTTGGCCGGTGTCGACCTCTTAACTGCGCAGAAGGGGC
TGGTCAAGCTGGCGGCGCTGGTGGAGGGTGATCTGGAAGTGGGGAAGGAT
GGAGATTTGGTTTACAACTTCCCGAGGAATTTTCGGACTGCTCTGAGGAC
ACGATCGATTACGCAGCAAGCAAAGGAGCTTTGGATTAAGGTATGGCCGT
CGTTGTTTTACGCAACAAGGGTGTCTTTTGGTTTGTGTTTAGTGTTGTCG
ATCGTGTTGGTCTTTGCAACCATTACCTTTGCGGGGTCCGCGTCGCAAGA
GGGAGATCGCGACGATGACCGAAGGAGGGAGAGAGGGGGAGGGTTCGGAG
GAGGGATGGGAATGTACTTTGGGCCTAGCCCGTTTGACTTTTTTATGTAT
CGGCCGTATGGTTATTACTACGGCTATGGAGGGCAGAGGCAGAGAGGAAG
AGATGAGGGGGCGCCGGTGGAGATGGGGTTTTTGGAGAGTTGTTTTTCAT
ACATTTTTGGGGATGGAAATCCAAATGTGGGGCTGGAGGAGGTGAGGTAC
ACGGAGATTGCGGGTGTCATAAGACGGAGTGGAGGAGCAGTGGTGGCGGA
GCAGCTAGCACCTTATCTTGATGTGCCAGCGCCGAAGGATCCCACGGGCT
ATGCGATGTCGGGAGGAGGGCCTCTGACTGCGGTGGTAGACGAATCGTTT
GTCTTGCCGGTTCTGACAAGATTGAATGGTCGGCCGGAAGTCACGGCAGA
GGGAGAGATTGTGTATGTTTTCCCTGACTTGATGACCACGGCGGCGGCCC
CGGGGGGAGAGGGAGGAAGGGAGATGCTGAATGCGAACTGGGCGAGGCAA
GAGAGGGTGGATGAGGAGGTGAGGGGGTATCAGGGGTTGACGGCATTTGA
GTTGAGGGAAGCTTTGCAAGCGAAGCGGGTCCCAGTGCAAGATTGCTTTG
ACAAAGCGTCGTTGCTTGAACGACTCAAAGGCTTTCTTCTCTCCGCTCCT
TCGACTGCACAAGCTGTTGGCACTGCTTCCTACCTCGAAGAGAATCCCAT
TCCCTTCTCACTCGCCCCTGGGACCAACCGATTATTTGCTGGTATTTTGG
GGGTGGCAAATTTGGGGGGGGCGATCGTGTTAGGCGATGTATTGAGAAAC
TATGCGTCTGTCTACGGAGCAAACACCCCCTTGCCGGGTATCCTTGGGTT
GAGCCAAGCCCTCTACCCCGCCCTCCTTGTGTACGCGGTCGGATTCAACC
TGATCCCTTTCTTGCGTTCTCGGTGGGTCAACGCGAAGAATAAAGAAATT
TTACAGCGAAACGAGGCAAGGCAAGCATGGGCGGTGATTTTGGAGAGAGC
TGTTGGGCCACTGTACGAGAAAATTTTATCGGCAAGACACTACCGATCTA
AAATGAAGGTGGTGAGGAAAGAGGATATGACGTACAGTAGCTCGGGGAGT
ATGGCAGAGCGGCAGGGAATGGATAAGATGACAAAGGATTTAGAGGATTT
TGATAGGCAATTTGAGGAAAAAGATATGAAGAGGGGAGGAAAGACGTTGT
AG
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Coding sequence (CDS) from alignment at chr15:511250..513151+

>NO15G01790.1 ID=NO15G01790.1|Name=NO15G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at chr15:511250..513151+ (Nannochloropsis oceanica)
ATGCCAAGAAGATCGCGAAAGCTGCAGCTGGCTGCAACCGCAGCGCTGCT
AATGGCTGCCCTTGTCTTGGCTTTTCTGCCTTCCGAGTCCTGGGCGTTTA
GACTGTCAGCGCCGCTACGCCCCCTCTCCTTTGTTCCGTTTTCCCCCTTC
ACCTCCTCCACCCCGTCAGCAATGCTGCAGGACACCCAGCGAAATCGTCT
CTGCACCATACATATCTGGCCTCACTCCTCTCGTCGGCCGAAAACGCAAC
TCGGCGCAGGCAACTTGCCTCAAGCAGAACAGCTCGCCATCCCCCCTCCA
GAGAAGGTCCTCGCCGCCGTCGAAAAAGCCGGCGGTCGAGTCACGGTTCA
AGACGTCGCAGCGTTGGCCGGTGTCGACCTCTTAACTGCGCAGAAGGGGC
TGGTCAAGCTGGCGGCGCTGGTGGAGGGTGATCTGGAAGTGGGGAAGGAT
GGAGATTTGGTTTACAACTTCCCGAGGAATTTTCGGACTGCTCTGAGGAC
ACGATCGATTACGCAGCAAGCAAAGGAGCTTTGGATTAAGGTATGGCCGT
CGTTGTTTTACGCAACAAGGGTGTCTTTTGGTTTGTGTTTAGTGTTGTCG
ATCGTGTTGGTCTTTGCAACCATTACCTTTGCGGGGTCCGCGTCGCAAGA
GGGAGATCGCGACGATGACCGAAGGAGGGAGAGAGGGGGAGGGTTCGGAG
GAGGGATGGGAATGTACTTTGGGCCTAGCCCGTTTGACTTTTTTATGTAT
CGGCCGTATGGTTATTACTACGGCTATGGAGGGCAGAGGCAGAGAGGAAG
AGATGAGGGGGCGCCGGTGGAGATGGGGTTTTTGGAGAGTTGTTTTTCAT
ACATTTTTGGGGATGGAAATCCAAATGTGGGGCTGGAGGAGGTGAGGTAC
ACGGAGATTGCGGGTGTCATAAGACGGAGTGGAGGAGCAGTGGTGGCGGA
GCAGCTAGCACCTTATCTTGATGTGCCAGCGCCGAAGGATCCCACGGGCT
ATGCGATGTCGGGAGGAGGGCCTCTGACTGCGGTGGTAGACGAATCGTTT
GTCTTGCCGGTTCTGACAAGATTGAATGGTCGGCCGGAAGTCACGGCAGA
GGGAGAGATTGTGTATGTTTTCCCTGACTTGATGACCACGGCGGCGGCCC
CGGGGGGAGAGGGAGGAAGGGAGATGCTGAATGCGAACTGGGCGAGGCAA
GAGAGGGTGGATGAGGAGGTGAGGGGGTATCAGGGGTTGACGGCATTTGA
GTTGAGGGAAGCTTTGCAAGCGAAGCGGGTCCCAGTGCAAGATTGCTTTG
ACAAAGCGTCGTTGCTTGAACGACTCAAAGGCTTTCTTCTCTCCGCTCCT
TCGACTGCACAAGCTGTTGGCACTGCTTCCTACCTCGAAGAGAATCCCAT
TCCCTTCTCACTCGCCCCTGGGACCAACCGATTATTTGCTGGTATTTTGG
GGGTGGCAAATTTGGGGGGGGCGATCGTGTTAGGCGATGTATTGAGAAAC
TATGCGTCTGTCTACGGAGCAAACACCCCCTTGCCGGGTATCCTTGGGTT
GAGCCAAGCCCTCTACCCCGCCCTCCTTGTGTACGCGGTCGGATTCAACC
TGATCCCTTTCTTGCGTTCTCGGTGGGTCAACGCGAAGAATAAAGAAATT
TTACAGCGAAACGAGGCAAGGCAAGCATGGGCGGTGATTTTGGAGAGAGC
TGTTGGGCCACTGTACGAGAAAATTTTATCGGCAAGACACTACCGATCTA
AAATGAAGGTGGTGAGGAAAGAGGATATGACGTACAGTAGCTCGGGGAGT
ATGGCAGAGCGGCAGGGAATGGATAAGATGACAAAGGATTTAGAGGATTT
TGATAGGCAATTTGAGGAAAAAGATATGAAGAGGGGAGGAAAGACGTTGT
AG
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Synonyms
Publications