NO15G01740.1, NO15G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01740.1
Unique NameNO15G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr15:490959..492200 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:490959..492200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01740.1 vs.
Match: ELS34852.1 (YD repeat protein [Pseudanabaena biceps PCC 7429])

HSP 1 Score: 205.7 bits (522), Expect = 2.800e-49
Identity = 140/387 (36.18%), Postives = 201/387 (51.94%), Query Frame = 0 
Query:   19 NANPVTAWNDVLQDQVRGNKIDPNTACRYGALLHTAQWQAFRDSIGQ------GAMPETQAAAVAAVASAGKTVLLSIFPNVTDRVNELYAQ---QAAAAVPTDRSATLTRALLND----RAKDGSSPAPPPYKGVEEVGKWRPTPPAFKAGLTPHWGQVKPFNLEKGDQFRVAAPPALDSLAFKMSYLEVKQVGTKNSTSRSADQTETVYFWS-GANIEMPWYGVLKQVAENF------TLAESVKAYACMATAMADARIAAFDSKYFYNSWRPVTSIQV----GNNVTDFPADPAFESEIMTPPHPEYPQGHTATAEAAATVLRAIAGKDEVPFVLTSEKVPGKIRAYPSFSAASYEIKESRTMAGVHFRFSGDRSLPLGQNVGN 382
            N++ +  WN  L + +  +K  P TA R  A++ TA + A               +    A+  AA ASA    L++++P  T   +   A    Q A     +      RA+ +D    R+ DGSS  P  Y     +G W+PT P+F   L P+WG V PF L  G QFR A  PAL S  +   + +VK +G+ NST+R+ADQTE   FW+ GA    P  G   Q+A+N       +L ++ + +A +   +ADA IAA+D+KY YNSWRP+T+IQ     GN+ T   ADP ++  I TPP PEY  GH+  +  A T+L A+ G D + F   S   PG  R + +F++A+ E   SR   G+HF FS    L  G++VGN
Sbjct:  850 NSDVILDWNATLLNAIAIDKSAPPTASRNMAIVQTAIFDAINSFTNTYKNYHFAGLAPAGASIEAAAASAAYRTLVNLYPTQTVYFDSALATSLAQIADGTAEEAGVAFGRAVADDILAFRSTDGSSN-PATYIPGTTLGDWKPTAPSFATALLPNWGLVTPFGLTSGSQFRPAGDPALTSDQYTTDFNQVKDLGSLNSTTRTADQTEIAKFWADGAGTYTP-PGHWNQIAQNIVANQGNSLLDNARLFALLDIGLADAGIAAWDAKYTYNSWRPITAIQQADTDGNSNT--LADPNWKPLITTPPFPEYVSGHSTFSGTAETILSALLGSD-ISFTTNSLGTPGIYRTFDNFTSAANEAGISRIYGGIHFYFSNVDGLATGRSVGN 1231
The following BLAST results are available for this feature:
BLAST of NO15G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ELS34852.12.800e-4936.18YD repeat protein [Pseudanabaena biceps PCC 7429][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01740NO15G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01740.1NO15G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01740.1.cds1NO15G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01740.1 ID=NO15G01740.1|Name=NO15G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ATGCGATATATTTCGGTCCTTCTCCTCCTGCTCCATTGGTTCTTAACTAC
GACAAATGCCAACCCGGTGACCGCCTGGAACGACGTACTGCAAGATCAGG
TTCGCGGTAATAAGATCGACCCCAACACGGCTTGCCGCTATGGTGCTCTC
TTGCACACGGCACAATGGCAGGCCTTCCGAGACAGCATTGGCCAGGGTGC
AATGCCTGAGACCCAGGCGGCGGCAGTCGCGGCAGTTGCGAGCGCGGGCA
AAACGGTGCTCCTCTCTATCTTCCCCAACGTGACTGATAGAGTAAATGAG
TTGTATGCCCAGCAAGCAGCAGCAGCGGTGCCCACAGACCGAAGCGCCAC
CCTCACTAGGGCGCTACTAAATGACCGCGCTAAGGACGGTTCTAGCCCCG
CCCCGCCTCCGTACAAAGGGGTGGAGGAGGTGGGCAAGTGGCGCCCCACT
CCTCCCGCCTTCAAGGCAGGCTTGACGCCGCACTGGGGTCAGGTCAAGCC
TTTTAATTTAGAGAAGGGCGATCAATTTCGTGTTGCTGCACCGCCAGCCT
TGGACTCGCTCGCCTTTAAAATGAGTTACCTAGAGGTGAAGCAGGTGGGC
ACGAAAAATTCCACTTCACGCTCTGCGGACCAAACCGAAACTGTGTACTT
CTGGAGCGGGGCAAACATTGAGATGCCCTGGTATGGTGTTCTCAAGCAAG
TGGCTGAAAACTTCACCCTCGCCGAAAGCGTCAAGGCCTACGCCTGCATG
GCCACCGCGATGGCTGACGCCCGCATTGCTGCTTTTGACTCAAAATATTT
TTACAACAGCTGGCGGCCCGTGACTTCGATTCAGGTTGGCAATAATGTGA
CAGACTTCCCGGCGGATCCGGCATTCGAGAGTGAAATTATGACACCGCCC
CACCCTGAATATCCCCAGGGGCACACTGCCACTGCAGAGGCAGCCGCCAC
CGTGTTGAGGGCGATTGCTGGGAAAGACGAGGTGCCCTTTGTACTGACCT
CAGAGAAAGTTCCGGGGAAGATTCGCGCCTACCCTTCCTTCAGCGCTGCC
TCATATGAAATTAAAGAGAGTCGCACTATGGCAGGGGTTCATTTTCGTTT
TAGCGGAGACCGGAGCTTGCCGTTGGGTCAAAACGTGGGGAATGCTGCAG
TGGTGGCGTACTCTTACAAGCCGGTCGCAGCTCCCGGGTTGCCGGCGAAA
AAGGTGAAGAGTATGAACAAAAATCTGTTTCGACGTGAATAA
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protein sequence of NO15G01740.1

>NO15G01740.1-protein ID=NO15G01740.1-protein|Name=NO15G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MRYISVLLLLLHWFLTTTNANPVTAWNDVLQDQVRGNKIDPNTACRYGAL
LHTAQWQAFRDSIGQGAMPETQAAAVAAVASAGKTVLLSIFPNVTDRVNE
LYAQQAAAAVPTDRSATLTRALLNDRAKDGSSPAPPPYKGVEEVGKWRPT
PPAFKAGLTPHWGQVKPFNLEKGDQFRVAAPPALDSLAFKMSYLEVKQVG
TKNSTSRSADQTETVYFWSGANIEMPWYGVLKQVAENFTLAESVKAYACM
ATAMADARIAAFDSKYFYNSWRPVTSIQVGNNVTDFPADPAFESEIMTPP
HPEYPQGHTATAEAAATVLRAIAGKDEVPFVLTSEKVPGKIRAYPSFSAA
SYEIKESRTMAGVHFRFSGDRSLPLGQNVGNAAVVAYSYKPVAAPGLPAK
KVKSMNKNLFRRE*
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mRNA from alignment at chr15:490959..492200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01740.1 ID=NO15G01740.1|Name=NO15G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at chr15:490959..492200- (Nannochloropsis oceanica)
ATGCGATATATTTCGGTCCTTCTCCTCCTGCTCCATTGGTTCTTAACTAC
GACAAATGCCAACCCGGTGACCGCCTGGAACGACGTACTGCAAGATCAGG
TTCGCGGTAATAAGATCGACCCCAACACGGCTTGCCGCTATGGTGCTCTC
TTGCACACGGCACAATGGCAGGCCTTCCGAGACAGCATTGGCCAGGGTGC
AATGCCTGAGACCCAGGCGGCGGCAGTCGCGGCAGTTGCGAGCGCGGGCA
AAACGGTGCTCCTCTCTATCTTCCCCAACGTGACTGATAGAGTAAATGAG
TTGTATGCCCAGCAAGCAGCAGCAGCGGTGCCCACAGACCGAAGCGCCAC
CCTCACTAGGGCGCTACTAAATGACCGCGCTAAGGACGGTTCTAGCCCCG
CCCCGCCTCCGTACAAAGGGGTGGAGGAGGTGGGCAAGTGGCGCCCCACT
CCTCCCGCCTTCAAGGCAGGCTTGACGCCGCACTGGGGTCAGGTCAAGCC
TTTTAATTTAGAGAAGGGCGATCAATTTCGTGTTGCTGCACCGCCAGCCT
TGGACTCGCTCGCCTTTAAAATGAGTTACCTAGAGGTGAAGCAGGTGGGC
ACGAAAAATTCCACTTCACGCTCTGCGGACCAAACCGAAACTGTGTACTT
CTGGAGCGGGGCAAACATTGAGATGCCCTGGTATGGTGTTCTCAAGCAAG
TGGCTGAAAACTTCACCCTCGCCGAAAGCGTCAAGGCCTACGCCTGCATG
GCCACCGCGATGGCTGACGCCCGCATTGCTGCTTTTGACTCAAAATATTT
TTACAACAGCTGGCGGCCCGTGACTTCGATTCAGGTTGGCAATAATGTGA
CAGACTTCCCGGCGGATCCGGCATTCGAGAGTGAAATTATGACACCGCCC
CACCCTGAATATCCCCAGGGGCACACTGCCACTGCAGAGGCAGCCGCCAC
CGTGTTGAGGGCGATTGCTGGGAAAGACGAGGTGCCCTTTGTACTGACCT
CAGAGAAAGTTCCGGGGAAGATTCGCGCCTACCCTTCCTTCAGCGCTGCC
TCATATGAAATTAAAGAGAGTCGCACTATGGCAGGGGTTCATTTTCGTTT
TAGCGGAGACCGGAGCTTGCCGTTGGGTCAAAACGTGGGGAATGCTGCAG
TGGTGGCGTACTCTTACAAGCCGGTCGCAGCTCCCGGGTTGCCGGCGAAA
AAGGTGAAGAGTATGAACAAAAATCTGTTTCGACGTGAATAA
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Coding sequence (CDS) from alignment at chr15:490959..492200-

>NO15G01740.1 ID=NO15G01740.1|Name=NO15G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr15:490959..492200- (Nannochloropsis oceanica)
ATGCGATATATTTCGGTCCTTCTCCTCCTGCTCCATTGGTTCTTAACTAC
GACAAATGCCAACCCGGTGACCGCCTGGAACGACGTACTGCAAGATCAGG
TTCGCGGTAATAAGATCGACCCCAACACGGCTTGCCGCTATGGTGCTCTC
TTGCACACGGCACAATGGCAGGCCTTCCGAGACAGCATTGGCCAGGGTGC
AATGCCTGAGACCCAGGCGGCGGCAGTCGCGGCAGTTGCGAGCGCGGGCA
AAACGGTGCTCCTCTCTATCTTCCCCAACGTGACTGATAGAGTAAATGAG
TTGTATGCCCAGCAAGCAGCAGCAGCGGTGCCCACAGACCGAAGCGCCAC
CCTCACTAGGGCGCTACTAAATGACCGCGCTAAGGACGGTTCTAGCCCCG
CCCCGCCTCCGTACAAAGGGGTGGAGGAGGTGGGCAAGTGGCGCCCCACT
CCTCCCGCCTTCAAGGCAGGCTTGACGCCGCACTGGGGTCAGGTCAAGCC
TTTTAATTTAGAGAAGGGCGATCAATTTCGTGTTGCTGCACCGCCAGCCT
TGGACTCGCTCGCCTTTAAAATGAGTTACCTAGAGGTGAAGCAGGTGGGC
ACGAAAAATTCCACTTCACGCTCTGCGGACCAAACCGAAACTGTGTACTT
CTGGAGCGGGGCAAACATTGAGATGCCCTGGTATGGTGTTCTCAAGCAAG
TGGCTGAAAACTTCACCCTCGCCGAAAGCGTCAAGGCCTACGCCTGCATG
GCCACCGCGATGGCTGACGCCCGCATTGCTGCTTTTGACTCAAAATATTT
TTACAACAGCTGGCGGCCCGTGACTTCGATTCAGGTTGGCAATAATGTGA
CAGACTTCCCGGCGGATCCGGCATTCGAGAGTGAAATTATGACACCGCCC
CACCCTGAATATCCCCAGGGGCACACTGCCACTGCAGAGGCAGCCGCCAC
CGTGTTGAGGGCGATTGCTGGGAAAGACGAGGTGCCCTTTGTACTGACCT
CAGAGAAAGTTCCGGGGAAGATTCGCGCCTACCCTTCCTTCAGCGCTGCC
TCATATGAAATTAAAGAGAGTCGCACTATGGCAGGGGTTCATTTTCGTTT
TAGCGGAGACCGGAGCTTGCCGTTGGGTCAAAACGTGGGGAATGCTGCAG
TGGTGGCGTACTCTTACAAGCCGGTCGCAGCTCCCGGGTTGCCGGCGAAA
AAGGTGAAGAGTATGAACAAAAATCTGTTTCGACGTGAATAA
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Synonyms
Publications