NO15G01290.1, NO15G01290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G01290.1
Unique Name	NO15G01290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2508
Alignment location	chr15:362595..365102 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:362595..365102 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO15G01290.1 vs.
Match: EWM22429.1 (Beta-lactamase/transpeptidase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 811.2 bits (2094), Expect = 1.800e-231
Identity = 390/511 (76.32%), Postives = 440/511 (86.11%), Query Frame = 0

Query:    1 MRLRFLTTGALSLAWLGIAMGIGTMSPEDARLDRKRLEKITQELQTQVSRNQLPGAAFQVYRAGKLVFQDAVGFQDRELMRPMGMGTIVRLMSQTKPLTAAGVMILIERGLLKLDDPLWKYHPRFRNMRVLKYDGATETVPADRDITINDLLLHTAGFGYSGGFNDPTGDGPWQTLELPFESLEFFMDDLADKPLFWQPGTTWRYSWSYDVLGYVIKRITNQSPDDWLRQNLFVPLQMYDTDFYVPMSKIDRFAVAYTMTRGNVLIPFIRPRMDPLQAFSPPTFLSCGSGIVSTLHDYSRFALMLLNGGEIDGIRILQSSTVDMMWRNNLNLALLPMDLNGWKSDMNTGWGYGFTVSAPGPLPGVDWSKHTGANKTGSIGWGGGMMTNWIASADNDLLVVFATQRLATPIPNTFQEIVVEGVMKSIKGNSPRKLPGPEGPAVDYEVDDGTNHAGGSGGNNRGFGLGRAARNPLPGLWGNQW-VQTDQMELLESLTQEQAERSETYQAVEKD 511
            MRL  L  G  +L  LGI  GIGTMSPE A LDR+RLE+IT++LQ QVSRNQLPGAAFQVYRAGKLVFQDAVG+QDRELMRPMGM TIVRLMSQTKPL AAGVMIL+ER L+ LDDPLWKY+P+FRN+RVLK DGA ETVPA+RDITI DLLLHTAG GY GGFNDP+GD P  T+E+PFE+LE+FM++ A KPL+WQPGTTWRYSWSYDVLGYVIKR+T QSPD WLRQNLF PL+MYDTDFYVPM KI RFAVAYTMTR N+LIP IRPRMDP+QAF+PP F+SCGSGIVSTLHDY RF +ML+NGG IDG RIL+S TVDMMWRN L+L+LLPMDLNGW+SDMNTGWG+GFTVSAPGPLP VDWSKH G+N+TG+IGWGGGMMTNWIASADNDL+V+FATQRLATPIPNTFQEIVV+GVM SIKGNSPRKLPGPEGPAV++EVDDG NHAGG   NN GFG          GLWGNQW +  D+ E+L SL  ++A RS+  Q + ++
Sbjct:    5 MRLHVLVGGLTALMCLGIVRGIGTMSPEAANLDRQRLEEITRDLQAQVSRNQLPGAAFQVYRAGKLVFQDAVGYQDRELMRPMGMNTIVRLMSQTKPLVAAGVMILLERDLISLDDPLWKYYPKFRNVRVLKSDGAKETVPANRDITILDLLLHTAGLGYGGGFNDPSGDSPLATMEIPFETLEYFMNEQASKPLYWQPGTTWRYSWSYDVLGYVIKRVTGQSPDIWLRQNLFEPLEMYDTDFYVPMDKIGRFAVAYTMTRSNILIPIIRPRMDPIQAFNPPPFISCGSGIVSTLHDYGRFTMMLMNGGVIDGKRILKSETVDMMWRNQLDLSLLPMDLNGWQSDMNTGWGFGFTVSAPGPLPDVDWSKHKGSNRTGAIGWGGGMMTNWIASADNDLIVLFATQRLATPIPNTFQEIVVQGVMDSIKGNSPRKLPGPEGPAVEFEVDDGINHAGGRNNNNGGFG----------GLWGNQWRLAADEEEVLTSLEPKEAGRSQPQQEMTEE 505

The following BLAST results are available for this feature:

BLAST of NO15G01290.1 vs.

BLAST of NO15G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22429.1	1.800e-231	76.32	Beta-lactamase/transpeptidase-like protein [Nannoc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G01290	NO15G01290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G01290.1	NO15G01290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G01290.1.cds1	NO15G01290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:362595..365102-
coding sequence from alignment at chr15:362595..365102-

mRNA sequence

>NO15G01290.1 ID=NO15G01290.1|Name=NO15G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2508bp
CGTTCCTCATCCCTCCAGCTCTGCAATTCCCCCAGGCCTTTCCTTTGTCT
TATCTTACCAGACATTTCGTCTTTATCACCCAGTCTTGGGATGGTGAATG
CCTCCATGCTTCTACATACGTTTTGATGCTCTTTGGGGCGGCCACGCGTT
TTCACACCCAGAGCAAACATGGGCCACGAACGTCCCTGCAGGCCTCCCCA
ACCTCGGACCAAGCAAAGGACCTTCAAAGCCCGTCGCCCACTGCGTTCAC
GCATTAGGAAATCTGTGCCAGCCTTGTGAAGAACAAACCTCACACAGGCA
ACACGACTCAATCAATGCACGACTAGATACTGAAACTCACCTTCACCGTC
CCTTTGTCCCATCCACCGTCCCTTTGCCCCATCCACTTTCCCTTCCATCA
AATCAGACGAAACATGAGGCTGAGGTTTCTCACAACTGGTGCATTAAGCT
TGGCGTGGCTCGGCATAGCCATGGGAATCGGCACCATGAGCCCGGAGGAT
GCCCGGCTGGACCGCAAGCGCCTGGAAAAGATTACGCAAGAACTGCAGAC
GCAAGTGAGCCGCAATCAGTTGCCGGGCGCGGCCTTCCAAGTCTATCGGG
CTGGTAAGCTCGTATTTCAAGATGCCGTCGGGTTTCAGGACCGGGAGCTG
ATGCGGCCCATGGGCATGGGCACCATTGTGCGCCTAATGTCCCAGACGAA
GCCCTTAACGGCGGCCGGCGTCATGATTCTGATCGAGCGAGGCTTGCTTA
AGTTGGACGACCCGCTCTGGAAGTACCATCCCAGGTTTCGTAACATGAGA
GTTCTCAAGTACGATGGGGCCACGGAAACCGTCCCTGCCGACCGTGACAT
CACCATCAACGACCTCCTCCTGCACACGGCCGGCTTCGGCTACTCCGGAG
GCTTCAACGACCCTACTGGGGATGGGCCTTGGCAGACCCTGGAGCTGCCC
TTTGAATCCCTCGAATTCTTTATGGACGACCTGGCTGACAAGCCCTTATT
CTGGCAGCCTGGCACAACTTGGCGATACTCCTGGAGTTATGACGTGCTGG
GGTACGTGATCAAGCGCATCACCAATCAGAGCCCCGATGACTGGCTTCGC
CAGAATTTGTTCGTACCCCTGCAGATGTACGACACGGACTTCTATGTCCC
CATGTCCAAGATTGATCGCTTTGCCGTCGCCTACACTATGACGCGCGGGA
ATGTCCTCATTCCATTTATCCGCCCTCGCATGGACCCTCTTCAGGCCTTC
AGTCCCCCGACCTTCCTATCTTGTGGCTCGGGCATCGTCTCCACGCTCCA
CGACTACAGCCGCTTCGCACTCATGTTGCTCAATGGCGGGGAGATCGACG
GGATCCGTATTTTGCAATCTTCAACGGTAGATATGATGTGGCGCAATAAC
CTGAACCTAGCCTTGCTGCCCATGGACCTCAATGGATGGAAGTCCGATAT
GAACACAGGCTGGGGTTATGGTTTCACTGTGTCTGCCCCTGGCCCCTTGC
CGGGCGTCGACTGGAGCAAGCACACGGGTGCAAACAAAACTGGTTCTATT
GGATGGGGTGGCGGGATGATGACCAATTGGATTGCTTCCGCTGATAATGA
CTTGCTGGTAGTTTTTGCCACGCAGCGTTTAGCTACACCTATTCCCAACA
CATTCCAGGAGATCGTGGTGGAGGGTGTGATGAAGTCCATCAAGGGCAAC
TCTCCCCGCAAGCTCCCCGGCCCCGAGGGTCCTGCTGTGGACTATGAGGT
CGACGATGGGACCAACCATGCAGGGGGGAGCGGCGGTAACAACCGCGGGT
TTGGACTAGGTCGGGCTGCTAGGAACCCTCTGCCCGGGTTGTGGGGTAAT
CAGTGGGTGCAGACAGACCAGATGGAGCTGTTGGAGTCCTTGACTCAGGA
GCAGGCCGAGAGATCTGAGACTTATCAGGCAGTCGAAAAGGATGTGGTGG
GGACCAAGACGACGACTCGTTTCCGCAACAATGCGTAAATGTATAACAAG
TATAAAATATAGATTTGACAGGAGAACTGGAACAGGGATTAAGATTTTCG
TCTGGGACTCTCCGTACCAGTTCATCTCAGTTCGCTCACTCATAAGTATA
ATCGGAATCGTCTTATCATCACCAGCAATCAACACACGAACCATCGATAT
TGTAGTTTTAGTGTAGCACGTGCACTCACAAGTGTCTGTTTAGAGGAATA
TGTATGTAGACTTCTCTTTGTGTCGCACATGTCATTTGTTTTCCACCACT
CCGAAGGGATAGCGTGATGAAAAGTTGTAAATGACTTTTGAACTTGGGTC
AAGACGAAAAGGGAAGATCAAGCAGGATGGCATTCGAGGGAGATAGCAGA
GAGGAGGAAGGCAGGGGGGAGTCACGAACAGGGCCAGATTGCATTTTTGT
TGGAGGACAAACATAAAGGGACTTTGTATAACCATGGAAAGATACACATT
CAAGAAGAAAAGGAATATAAAGTGGTCCTTGCAACTAATTTACATGCTTG
TGGTAGGC

protein sequence of NO15G01290.1

>NO15G01290.1-protein ID=NO15G01290.1-protein|Name=NO15G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MRLRFLTTGALSLAWLGIAMGIGTMSPEDARLDRKRLEKITQELQTQVSR
NQLPGAAFQVYRAGKLVFQDAVGFQDRELMRPMGMGTIVRLMSQTKPLTA
AGVMILIERGLLKLDDPLWKYHPRFRNMRVLKYDGATETVPADRDITIND
LLLHTAGFGYSGGFNDPTGDGPWQTLELPFESLEFFMDDLADKPLFWQPG
TTWRYSWSYDVLGYVIKRITNQSPDDWLRQNLFVPLQMYDTDFYVPMSKI
DRFAVAYTMTRGNVLIPFIRPRMDPLQAFSPPTFLSCGSGIVSTLHDYSR
FALMLLNGGEIDGIRILQSSTVDMMWRNNLNLALLPMDLNGWKSDMNTGW
GYGFTVSAPGPLPGVDWSKHTGANKTGSIGWGGGMMTNWIASADNDLLVV
FATQRLATPIPNTFQEIVVEGVMKSIKGNSPRKLPGPEGPAVDYEVDDGT
NHAGGSGGNNRGFGLGRAARNPLPGLWGNQWVQTDQMELLESLTQEQAER
SETYQAVEKDVVGTKTTTRFRNNA*

mRNA from alignment at chr15:362595..365102-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G01290.1 ID=NO15G01290.1|Name=NO15G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2508bp|location=Sequence derived from alignment at chr15:362595..365102- (Nannochloropsis oceanica)
CGTTCCTCATCCCTCCAGCTCTGCAATTCCCCCAGGCCTTTCCTTTGTCT
TATCTTACCAGACATTTCGTCTTTATCACCCAGTCTTGGGATGGTGAATG
CCTCCATGCTTCTACATACGTTTTGATGCTCTTTGGGGCGGCCACGCGTT
TTCACACCCAGAGCAAACATGGGCCACGAACGTCCCTGCAGGCCTCCCCA
ACCTCGGACCAAGCAAAGGACCTTCAAAGCCCGTCGCCCACTGCGTTCAC
GCATTAGGAAATCTGTGCCAGCCTTGTGAAGAACAAACCTCACACAGGCA
ACACGACTCAATCAATGCACGACTAGATACTGAAACTCACCTTCACCGTC
CCTTTGTCCCATCCACCGTCCCTTTGCCCCATCCACTTTCCCTTCCATCA
AATCAGACGAAACATGAGGCTGAGGTTTCTCACAACTGGTGCATTAAGCT
TGGCGTGGCTCGGCATAGCCATGGGAATCGGCACCATGAGCCCGGAGGAT
GCCCGGCTGGACCGCAAGCGCCTGGAAAAGATTACGCAAGAACTGCAGAC
GCAAGTGAGCCGCAATCAGTTGCCGGGCGCGGCCTTCCAAGTCTATCGGG
CTGGTAAGCTCGTATTTCAAGATGCCGTCGGGTTTCAGGACCGGGAGCTG
ATGCGGCCCATGGGCATGGGCACCATTGTGCGCCTAATGTCCCAGACGAA
GCCCTTAACGGCGGCCGGCGTCATGATTCTGATCGAGCGAGGCTTGCTTA
AGTTGGACGACCCGCTCTGGAAGTACCATCCCAGGTTTCGTAACATGAGA
GTTCTCAAGTACGATGGGGCCACGGAAACCGTCCCTGCCGACCGTGACAT
CACCATCAACGACCTCCTCCTGCACACGGCCGGCTTCGGCTACTCCGGAG
GCTTCAACGACCCTACTGGGGATGGGCCTTGGCAGACCCTGGAGCTGCCC
TTTGAATCCCTCGAATTCTTTATGGACGACCTGGCTGACAAGCCCTTATT
CTGGCAGCCTGGCACAACTTGGCGATACTCCTGGAGTTATGACGTGCTGG
GGTACGTGATCAAGCGCATCACCAATCAGAGCCCCGATGACTGGCTTCGC
CAGAATTTGTTCGTACCCCTGCAGATGTACGACACGGACTTCTATGTCCC
CATGTCCAAGATTGATCGCTTTGCCGTCGCCTACACTATGACGCGCGGGA
ATGTCCTCATTCCATTTATCCGCCCTCGCATGGACCCTCTTCAGGCCTTC
AGTCCCCCGACCTTCCTATCTTGTGGCTCGGGCATCGTCTCCACGCTCCA
CGACTACAGCCGCTTCGCACTCATGTTGCTCAATGGCGGGGAGATCGACG
GGATCCGTATTTTGCAATCTTCAACGGTAGATATGATGTGGCGCAATAAC
CTGAACCTAGCCTTGCTGCCCATGGACCTCAATGGATGGAAGTCCGATAT
GAACACAGGCTGGGGTTATGGTTTCACTGTGTCTGCCCCTGGCCCCTTGC
CGGGCGTCGACTGGAGCAAGCACACGGGTGCAAACAAAACTGGTTCTATT
GGATGGGGTGGCGGGATGATGACCAATTGGATTGCTTCCGCTGATAATGA
CTTGCTGGTAGTTTTTGCCACGCAGCGTTTAGCTACACCTATTCCCAACA
CATTCCAGGAGATCGTGGTGGAGGGTGTGATGAAGTCCATCAAGGGCAAC
TCTCCCCGCAAGCTCCCCGGCCCCGAGGGTCCTGCTGTGGACTATGAGGT
CGACGATGGGACCAACCATGCAGGGGGGAGCGGCGGTAACAACCGCGGGT
TTGGACTAGGTCGGGCTGCTAGGAACCCTCTGCCCGGGTTGTGGGGTAAT
CAGTGGGTGCAGACAGACCAGATGGAGCTGTTGGAGTCCTTGACTCAGGA
GCAGGCCGAGAGATCTGAGACTTATCAGGCAGTCGAAAAGGATGTGGTGG
GGACCAAGACGACGACTCGTTTCCGCAACAATGCGTAAATGTATAACAAG
TATAAAATATAGATTTGACAGGAGAACTGGAACAGGGATTAAGATTTTCG
TCTGGGACTCTCCGTACCAGTTCATCTCAGTTCGCTCACTCATAAGTATA
ATCGGAATCGTCTTATCATCACCAGCAATCAACACACGAACCATCGATAT
TGTAGTTTTAGTGTAGCACGTGCACTCACAAGTGTCTGTTTAGAGGAATA
TGTATGTAGACTTCTCTTTGTGTCGCACATGTCATTTGTTTTCCACCACT
CCGAAGGGATAGCGTGATGAAAAGTTGTAAATGACTTTTGAACTTGGGTC
AAGACGAAAAGGGAAGATCAAGCAGGATGGCATTCGAGGGAGATAGCAGA
GAGGAGGAAGGCAGGGGGGAGTCACGAACAGGGCCAGATTGCATTTTTGT
TGGAGGACAAACATAAAGGGACTTTGTATAACCATGGAAAGATACACATT
CAAGAAGAAAAGGAATATAAAGTGGTCCTTGCAACTAATTTACATGCTTG
TGGTAGGC

Coding sequence (CDS) from alignment at chr15:362595..365102-

>NO15G01290.1 ID=NO15G01290.1|Name=NO15G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr15:362595..365102- (Nannochloropsis oceanica)
ATGAGGCTGAGGTTTCTCACAACTGGTGCATTAAGCTTGGCGTGGCTCGG
CATAGCCATGGGAATCGGCACCATGAGCCCGGAGGATGCCCGGCTGGACC
GCAAGCGCCTGGAAAAGATTACGCAAGAACTGCAGACGCAAGTGAGCCGC
AATCAGTTGCCGGGCGCGGCCTTCCAAGTCTATCGGGCTGGTAAGCTCGT
ATTTCAAGATGCCGTCGGGTTTCAGGACCGGGAGCTGATGCGGCCCATGG
GCATGGGCACCATTGTGCGCCTAATGTCCCAGACGAAGCCCTTAACGGCG
GCCGGCGTCATGATTCTGATCGAGCGAGGCTTGCTTAAGTTGGACGACCC
GCTCTGGAAGTACCATCCCAGGTTTCGTAACATGAGAGTTCTCAAGTACG
ATGGGGCCACGGAAACCGTCCCTGCCGACCGTGACATCACCATCAACGAC
CTCCTCCTGCACACGGCCGGCTTCGGCTACTCCGGAGGCTTCAACGACCC
TACTGGGGATGGGCCTTGGCAGACCCTGGAGCTGCCCTTTGAATCCCTCG
AATTCTTTATGGACGACCTGGCTGACAAGCCCTTATTCTGGCAGCCTGGC
ACAACTTGGCGATACTCCTGGAGTTATGACGTGCTGGGGTACGTGATCAA
GCGCATCACCAATCAGAGCCCCGATGACTGGCTTCGCCAGAATTTGTTCG
TACCCCTGCAGATGTACGACACGGACTTCTATGTCCCCATGTCCAAGATT
GATCGCTTTGCCGTCGCCTACACTATGACGCGCGGGAATGTCCTCATTCC
ATTTATCCGCCCTCGCATGGACCCTCTTCAGGCCTTCAGTCCCCCGACCT
TCCTATCTTGTGGCTCGGGCATCGTCTCCACGCTCCACGACTACAGCCGC
TTCGCACTCATGTTGCTCAATGGCGGGGAGATCGACGGGATCCGTATTTT
GCAATCTTCAACGGTAGATATGATGTGGCGCAATAACCTGAACCTAGCCT
TGCTGCCCATGGACCTCAATGGATGGAAGTCCGATATGAACACAGGCTGG
GGTTATGGTTTCACTGTGTCTGCCCCTGGCCCCTTGCCGGGCGTCGACTG
GAGCAAGCACACGGGTGCAAACAAAACTGGTTCTATTGGATGGGGTGGCG
GGATGATGACCAATTGGATTGCTTCCGCTGATAATGACTTGCTGGTAGTT
TTTGCCACGCAGCGTTTAGCTACACCTATTCCCAACACATTCCAGGAGAT
CGTGGTGGAGGGTGTGATGAAGTCCATCAAGGGCAACTCTCCCCGCAAGC
TCCCCGGCCCCGAGGGTCCTGCTGTGGACTATGAGGTCGACGATGGGACC
AACCATGCAGGGGGGAGCGGCGGTAACAACCGCGGGTTTGGACTAGGTCG
GGCTGCTAGGAACCCTCTGCCCGGGTTGTGGGGTAATCAGTGGGTGCAGA
CAGACCAGATGGAGCTGTTGGAGTCCTTGACTCAGGAGCAGGCCGAGAGA
TCTGAGACTTATCAGGCAGTCGAAAAGGATGTGGTGGGGACCAAGACGAC
GACTCGTTTCCGCAACAATGCGTAA

Synonyms

Publications