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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr15 | genome | chr15:353115..356245 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G01250.1 vs.
Match: EWM22418.1 (adenosine trna methylthiotransferase [Nannochloropsis gaditana]) HSP 1 Score: 1027.7 bits (2656), Expect = 1.600e-296 Identity = 509/606 (83.99%), Postives = 566/606 (93.40%), Query Frame = 0
Query: 64 CSAIAPQTGQKP-SKVKGESMNLSLKELKERTEAERQKNVIAVRARHLLVETEPLCDSLYEDIKKGAEFHIMAQAISACSVTREAGGDVGWIGVADDFLEDVVPHQVREAALKQKPGDVIKVSSTRGFHLVKIEDVMFDLSYTSKPQGRVQGRGLMPTPLKQLMAKEGADADAALTYAVESMGCAMNTADSERMAGQLMALGFKEASTPQEVTKADVVVVNTCSIRDHAEQKVYSFLGPYINRKKRGDNLAIVVAGCVAQQEGQAIITRFPEVDLVIGPQYANRLGDLLEEVMDGNQVVATEATHIMEDVTKPRRDSDLRAWVNIIYGCNERCTYCVVPTTRGTEQSRPRESVIREIEELARTGYREITLLGQNIDAYGRDLTPKQKFSDLLLAVGKVKGIERVRFVTSHPRYMSMGVIDAVASTPNMCEMFHLPVQAGDDEILRRMSRGYTVAKYLEIVDRIRTLLPDAAVTSDIIVGFPGETEEQFQNTLRLMETVKFDQVNTAAYSPRPNTPAAIYEEQVPDDVKSDRLQRINRLAADHALERNQRYLGREMEVLVEGRYVKDPRLVKGRNRQGRPVLFEGDIAELRGKLVPVLITEVKSFML 669
CSA A + Q +K ESMNLSLK+ KER EA+R+K+VIAVRARHLLVE +PLCDSL+ED+KKGAEFH +A AISACSVTR+AGGDVGWIG+AD+F+EDV+P VRE AL+ KPGDV K++S RGFHLVKIEDVMFDLSYTSKPQGRVQGRGL+PTPLK+LMAK+ DAAL YAVE+MGCAMNTADSERMAGQL ALGF+EA++ +EV KADVVVVNTCSIRDHAEQKVYS+LGPY+NRKKRGDNLAIVVAGCVAQQEGQAI++RFPEVDLVIGPQYANRLGDLLEEVMDGNQVVATEATHIMEDV+KPRRDSD+RAWVNIIYGCNERCTYCVVPTTRGTEQSRPRESVIREIEELAR+GYREITLLGQNIDA+GRDLTPKQKFSDLL AVG+V+GI+RVRFVTSHPRYMSM V+DAVAS PNMCEMFH+PVQ+GDD+IL++MSRGYTV+K+LEIV+RIR+LLPDAAVTSDIIVGFPGETE QFQNTLRLME VKFDQVNTAAYSPRPNTPAA YE+Q+ DDVKSDRLQRIN+LAA+HA+ERN RYLGRE+EVLVE R+VKDPRLVKGRNRQGRPVLFEG+I ELRGKLVPVLI EV+S+ML
Sbjct: 73 CSATAQKLWQTSGAKTMEESMNLSLKDFKERIEAQRRKSVIAVRARHLLVEVKPLCDSLFEDVKKGAEFHALAAAISACSVTRDAGGDVGWIGMADEFMEDVLPRHVRELALQHKPGDVFKITSLRGFHLVKIEDVMFDLSYTSKPQGRVQGRGLLPTPLKELMAKD--KDDAALVYAVETMGCAMNTADSERMAGQLSALGFREAASSEEVAKADVVVVNTCSIRDHAEQKVYSYLGPYVNRKKRGDNLAIVVAGCVAQQEGQAIVSRFPEVDLVIGPQYANRLGDLLEEVMDGNQVVATEATHIMEDVSKPRRDSDIRAWVNIIYGCNERCTYCVVPTTRGTEQSRPRESVIREIEELARSGYREITLLGQNIDAWGRDLTPKQKFSDLLHAVGRVEGIKRVRFVTSHPRYMSMNVVDAVASIPNMCEMFHVPVQSGDDDILKKMSRGYTVSKFLEIVERIRSLLPDAAVTSDIIVGFPGETEAQFQNTLRLMEIVKFDQVNTAAYSPRPNTPAATYEDQISDDVKSDRLQRINKLAAEHAMERNHRYLGREVEVLVESRHVKDPRLVKGRNRQGRPVLFEGNIEELRGKLVPVLIKEVRSYML 676
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G01250.1 ID=NO15G01250.1|Name=NO15G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp ATGCAAGACCAACGGGCTCGACGGTCGCAAGCTGCTGCACTGCTACAGAT GGCTTGTCTCGTGCACTGCCTCCCCACCGTACACAGTTTCGTCGGCGGAG GAAGCAGGGCTCTGTGGACACCACAATATACGGGCGCGCTACTCAGGCCC GTGTCGGGACCACAGCGTGCCCGGATAGGAGGGACAATCTGCAGTGCGAT TGCGCCACAGACAGGACAAAAGCCCAGCAAGGTCAAAGGAGAGAGCATGA ATCTCTCCTTAAAAGAGCTCAAAGAACGGACCGAGGCCGAGCGGCAAAAG AACGTCATAGCAGTGCGTGCCCGGCACTTGCTCGTGGAGACGGAGCCTTT GTGTGATTCTCTTTACGAGGATATCAAAAAGGGGGCGGAATTTCACATCA TGGCACAAGCCATCTCGGCTTGCTCGGTGACACGCGAGGCTGGCGGGGAC GTGGGTTGGATTGGTGTAGCGGACGATTTCCTCGAAGACGTGGTCCCGCA CCAGGTGCGGGAAGCGGCCCTCAAGCAGAAGCCGGGGGATGTGATAAAGG TCTCAAGCACGCGGGGTTTCCACCTGGTCAAAATAGAGGATGTCATGTTC GACCTTAGCTACACCTCCAAGCCTCAGGGTCGAGTGCAGGGCCGGGGTTT GATGCCGACGCCTCTCAAACAGCTCATGGCTAAGGAGGGGGCCGATGCGG ACGCCGCGCTGACGTACGCAGTAGAATCAATGGGCTGTGCGATGAACACG GCAGACTCGGAGCGTATGGCAGGACAATTGATGGCGCTGGGCTTCAAGGA GGCCTCCACGCCACAGGAGGTCACAAAGGCCGATGTGGTGGTTGTTAATA CTTGTTCCATCCGTGATCACGCCGAGCAAAAAGTCTACAGCTTTCTTGGC CCGTACATCAACCGGAAGAAGCGCGGCGACAACCTGGCCATTGTCGTGGC AGGCTGTGTGGCGCAGCAGGAAGGGCAGGCTATCATCACGCGCTTCCCGG AGGTGGACTTGGTGATAGGGCCGCAGTACGCGAATAGGCTGGGGGATCTC TTGGAGGAAGTGATGGACGGGAATCAGGTGGTTGCGACCGAGGCCACACA CATCATGGAAGACGTCACCAAGCCGAGACGCGACAGTGATTTGCGGGCGT GGGTTAATATAATTTACGGTTGCAACGAACGCTGCACGTATTGCGTCGTT CCCACTACCCGCGGCACAGAGCAAAGTAGGCCACGCGAGTCCGTGATCCG CGAGATCGAAGAGCTGGCTCGCACTGGCTATCGTGAAATTACTCTGCTTG GTCAGAACATTGACGCTTACGGCCGAGACCTCACCCCGAAGCAGAAATTC TCGGACCTGCTGCTTGCGGTGGGCAAGGTGAAGGGCATTGAGCGCGTGCG TTTTGTGACGAGCCATCCCAGGTACATGTCCATGGGCGTCATCGACGCTG TAGCCTCCACCCCCAATATGTGCGAGATGTTTCACCTTCCGGTGCAGGCC GGCGACGATGAAATCCTGAGGCGGATGAGCCGGGGCTACACCGTGGCCAA GTACCTGGAGATCGTCGACCGAATCCGGACCCTGCTCCCAGACGCCGCGG TCACCTCTGATATCATCGTTGGCTTCCCCGGAGAGACGGAAGAGCAGTTC CAGAACACGCTCCGGCTCATGGAGACTGTCAAGTTTGACCAGGTCAACAC TGCAGCCTACAGCCCCAGACCCAATACGCCTGCCGCCATTTATGAGGAGC AGGTTCCCGATGATGTCAAATCAGACCGGCTGCAGCGGATCAACAGGCTG GCTGCCGACCACGCCTTGGAGCGAAACCAGCGCTACCTGGGCCGGGAGAT GGAGGTGTTGGTAGAGGGGCGGTACGTCAAGGACCCTCGTCTGGTCAAGG GCCGCAACCGCCAGGGCCGGCCTGTGCTGTTTGAAGGAGACATTGCCGAA CTCCGGGGCAAGCTCGTGCCAGTACTCATCACGGAGGTCAAATCATTCAT GCTGCTCGGGAAAGCGACAGGCGAAGCGACGTGA back to topprotein sequence of NO15G01250.1 >NO15G01250.1-protein ID=NO15G01250.1-protein|Name=NO15G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=678bp MQDQRARRSQAAALLQMACLVHCLPTVHSFVGGGSRALWTPQYTGALLRP VSGPQRARIGGTICSAIAPQTGQKPSKVKGESMNLSLKELKERTEAERQK NVIAVRARHLLVETEPLCDSLYEDIKKGAEFHIMAQAISACSVTREAGGD VGWIGVADDFLEDVVPHQVREAALKQKPGDVIKVSSTRGFHLVKIEDVMF DLSYTSKPQGRVQGRGLMPTPLKQLMAKEGADADAALTYAVESMGCAMNT ADSERMAGQLMALGFKEASTPQEVTKADVVVVNTCSIRDHAEQKVYSFLG PYINRKKRGDNLAIVVAGCVAQQEGQAIITRFPEVDLVIGPQYANRLGDL LEEVMDGNQVVATEATHIMEDVTKPRRDSDLRAWVNIIYGCNERCTYCVV PTTRGTEQSRPRESVIREIEELARTGYREITLLGQNIDAYGRDLTPKQKF SDLLLAVGKVKGIERVRFVTSHPRYMSMGVIDAVASTPNMCEMFHLPVQA GDDEILRRMSRGYTVAKYLEIVDRIRTLLPDAAVTSDIIVGFPGETEEQF QNTLRLMETVKFDQVNTAAYSPRPNTPAAIYEEQVPDDVKSDRLQRINRL AADHALERNQRYLGREMEVLVEGRYVKDPRLVKGRNRQGRPVLFEGDIAE LRGKLVPVLITEVKSFMLLGKATGEAT* back to topmRNA from alignment at chr15:353115..356245+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G01250.1 ID=NO15G01250.1|Name=NO15G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3131bp|location=Sequence derived from alignment at chr15:353115..356245+ (Nannochloropsis oceanica) ATGCAAGACCAACGGGCTCGACGGTCGCAAGCTGCTGCACTGCTACAGAT
GGCTTGTCTCGTGCACTGCCTCCCCACCGTACACAGTTTCGTCGGCGGAG
GAAGCAGGGCTCTGTGGACACCACAATATACGGGCGCGCTACTCAGGTAC
GACGGACATAGGTGGGCAAAATATCTGCCTAATTTTGACTGGATTTTCCC
GTCGTACCCTTTTTCTCTCACCATCTCAACCCACACATACTACCACCAAT
TTGCAAAGGCCCGTGTCGGGACCACAGCGTGCCCGGATAGGAGGGACAAT
CTGCAGTGCGATTGCGCCACAGACAGGACAAAAGCCCAGCAAGGTCAAAG
GAGGTGAGGTTCTTGGTGGCACATAGGGGTGGGGAGGGGGGGGAATAGCT
GGGAACTAATGTGCACTGACACAGCGTCGCGTGCGCATAATCAAACAGAG
AGCATGAATCTCTCCTTAAAAGAGCTCAAAGAACGGACCGAGGCCGAGCG
GCAAAAGAACGTCATAGCAGTGCGTGCCCGGCACTTGCTCGTGGAGGTGA
GAGAGGGGGCTTTGGGGGGTGGGTAGAAAAGAAACGAGAGACGATTAGAA
GGGGGGCTGAAATTGCTCTCATTTTGAATTAATGTTTACTAAATGTCCCC
TTCCTTATCATTTCACGTGCATGCATTACAATGCACAACCAGACGGAGCC
TTTGTGTGATTCTCTTTACGAGGATATCAAAAAGGGGGCGGAATTTCACA
TCATGGCACAAGCCATCTCGGCTTGCTCGGTAAGACTTTGGAAGGGATGA
AAAATGATAATCGACTGTATAGAGAATATGGAAATGCGTCGCAGGCCATG
TAGGAGGCAATTTAAGGAGAGACAGAAGGAGCTCCGTCCCGGAGGAAAAC
TCTTCTATTTAGCTCTTTGGTAAAGTTATGTCAACTTTTTTCTTTCCTCT
ACCTCTCTTATCACACCGTCAGGTGACACGCGAGGCTGGCGGGGACGTGG
GTTGGATTGGTGTAGCGGACGATTTCCTCGAAGACGTGGTCCCGCACCAG
GTGCGGGAAGCGGCCCTCAAGCAGAAGCCGGGGGATGTGATAAAGGTCTC
AAGCACGCGGGGTTTCCACCTGGTCAAAATAGAGGATGTCATGTTCGACC
TTAGCTACACCTCCAAGCCTCAGGGTCGAGTGCAGGGCCGGGGTTTGATG
CCGACGCCTCTCAAACAGCTCATGGCTAAGGAGGGGGCCGATGCGGACGC
CGCGCTGACGTACGCAGTAGAATCAATGGGCTGTGCGATGAACACGGCAG
ACTCGGAGCGTATGGCAGGACAATTGATGGCGCTGGGCTTCAAGGAGGCC
TCCACGCCACAGGAGGTCACAAAGGCCGATGTGGTGGTTGTTAATACTTG
TTCCATCCGTGATCACGCCGAGCAAAAAGTCTACAGCTTTCTTGGCCCGT
ACATCAACCGGAAGAAGCGCGGCGACAACCTGGCCATTGTCGTGGCAGGC
TGTGTGGCGCAGCAGGAAGGGCAGGCTATCATCACGCGCTTCCCGGAGGT
GGACTTGGTGATAGGGCCGCAGTACGCGAATAGGCTGGGGGATCTCTTGG
AGGAAGTGATGGACGGGAATCAGGTGGTTGCGACCGAGGCCACACACATC
ATGGAAGACGTCACCAAGCCGAGACGCGACAGTGATTTGCGGGCGTGGGT
TAATATAATTTACGGTTGCAACGAACGCTGCACGTATTGCGTCGTTCCCA
CTACCCGCGGCACAGGTAAGGTTATCCCCTCTAGTTATTGACTCAGGGTC
CACAGCCCTTTCTTGTCAGGGCAGTAACAGTAGTTTGTCTATCGCCCCAC
TTTTATTCTGACTCCCGCGACCTTTCATGGCGATCATGTGCAAATCTTAA
GGGCAAGGAAGGTACCTGCAAGGTCTCATGAGGACTCTCAATACAGGAAG
ACAATGAGAAACGAGGGGCCAGTTGTGCCACCAACCAGTTTTTGGGAAGG
GAGGGGATGGTGGCGTGGTTGGGTGGAATTGTCTTAAGGCTTTTGAGATT
TTTTTTTTCAACTTTCAGTATTTACTATTTTTTTAGTGTGATTGATAGTG
TTGTCTAAATATATGGCCCTCGCAGGTGGCTCGGCAACCACCCCTGTAGC
AATCTGTTTTGACCTCAACGCTACCCACTTCCACCCACCACCACCCCTCC
AAACAGAGCAAAGTAGGCCACGCGAGTCCGTGATCCGCGAGATCGAAGAG
CTGGCTCGCACTGGCTATCGTGAAATTACTCTGCTTGGTCAGAACATTGA
CGCTTACGGCCGAGACCTCACCCCGAAGCAGAAATTCTCGGACCTGCTGC
TTGCGGTGGGCAAGGTGAAGGGCATTGAGCGCGTGCGTTTTGTGACGAGC
CATCCCAGGTACATGTCCATGGGCGTCATCGACGCTGTAGCCTCCACCCC
CAATATGTGCGAGATGTTTCACCTTCCGGTGCAGGCCGGCGACGATGAAA
TCCTGAGGCGGATGAGCCGGGGCTACACCGTGGCCAAGTACCTGGAGATC
GTCGACCGAATCCGGACCCTGCTCCCAGACGCCGCGGTCACCTCTGATAT
CATCGTTGGCTTCCCCGGAGAGACGGAAGAGCAGTTCCAGAACACGCTCC
GGCTCATGGAGACTGTCAAGTTTGACCAGGTCAACACTGCAGCCTACAGC
CCCAGGTATGTATTCTTGTGGATGGAGTCATTCTCAGCTGGGCTTTTCGT
GTCTTTGAATCATGTTTATTCCGCGAGAGAAATAAATCTTTATCTTCCTC
AATCCAAATGTACAGACCCAATACGCCTGCCGCCATTTATGAGGAGCAGG
TTCCCGATGATGTCAAATCAGACCGGCTGCAGCGGATCAACAGGCTGGCT
GCCGACCACGCCTTGGAGCGAAACCAGCGCTACCTGGGCCGGGAGATGGA
GGTGTTGGTAGAGGGGCGGTACGTCAAGGACCCTCGTCTGGTCAAGGGCC
GCAACCGCCAGGGCCGGCCTGTGCTGTTTGAAGGAGACATTGCCGAACTC
CGGGGCAAGCTCGTGCCAGTACTCATCACGGAGGTCAAATCATTCATGCT
GCTCGGGAAAGCGACAGGCGAAGCGACGTGA back to topCoding sequence (CDS) from alignment at chr15:353115..356245+ >NO15G01250.1 ID=NO15G01250.1|Name=NO15G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=2034bp|location=Sequence derived from alignment at chr15:353115..356245+ (Nannochloropsis oceanica) ATGCAAGACCAACGGGCTCGACGGTCGCAAGCTGCTGCACTGCTACAGAT GGCTTGTCTCGTGCACTGCCTCCCCACCGTACACAGTTTCGTCGGCGGAG GAAGCAGGGCTCTGTGGACACCACAATATACGGGCGCGCTACTCAGGCCC GTGTCGGGACCACAGCGTGCCCGGATAGGAGGGACAATCTGCAGTGCGAT TGCGCCACAGACAGGACAAAAGCCCAGCAAGGTCAAAGGAGAGAGCATGA ATCTCTCCTTAAAAGAGCTCAAAGAACGGACCGAGGCCGAGCGGCAAAAG AACGTCATAGCAGTGCGTGCCCGGCACTTGCTCGTGGAGACGGAGCCTTT GTGTGATTCTCTTTACGAGGATATCAAAAAGGGGGCGGAATTTCACATCA TGGCACAAGCCATCTCGGCTTGCTCGGTGACACGCGAGGCTGGCGGGGAC GTGGGTTGGATTGGTGTAGCGGACGATTTCCTCGAAGACGTGGTCCCGCA CCAGGTGCGGGAAGCGGCCCTCAAGCAGAAGCCGGGGGATGTGATAAAGG TCTCAAGCACGCGGGGTTTCCACCTGGTCAAAATAGAGGATGTCATGTTC GACCTTAGCTACACCTCCAAGCCTCAGGGTCGAGTGCAGGGCCGGGGTTT GATGCCGACGCCTCTCAAACAGCTCATGGCTAAGGAGGGGGCCGATGCGG ACGCCGCGCTGACGTACGCAGTAGAATCAATGGGCTGTGCGATGAACACG GCAGACTCGGAGCGTATGGCAGGACAATTGATGGCGCTGGGCTTCAAGGA GGCCTCCACGCCACAGGAGGTCACAAAGGCCGATGTGGTGGTTGTTAATA CTTGTTCCATCCGTGATCACGCCGAGCAAAAAGTCTACAGCTTTCTTGGC CCGTACATCAACCGGAAGAAGCGCGGCGACAACCTGGCCATTGTCGTGGC AGGCTGTGTGGCGCAGCAGGAAGGGCAGGCTATCATCACGCGCTTCCCGG AGGTGGACTTGGTGATAGGGCCGCAGTACGCGAATAGGCTGGGGGATCTC TTGGAGGAAGTGATGGACGGGAATCAGGTGGTTGCGACCGAGGCCACACA CATCATGGAAGACGTCACCAAGCCGAGACGCGACAGTGATTTGCGGGCGT GGGTTAATATAATTTACGGTTGCAACGAACGCTGCACGTATTGCGTCGTT CCCACTACCCGCGGCACAGAGCAAAGTAGGCCACGCGAGTCCGTGATCCG CGAGATCGAAGAGCTGGCTCGCACTGGCTATCGTGAAATTACTCTGCTTG GTCAGAACATTGACGCTTACGGCCGAGACCTCACCCCGAAGCAGAAATTC TCGGACCTGCTGCTTGCGGTGGGCAAGGTGAAGGGCATTGAGCGCGTGCG TTTTGTGACGAGCCATCCCAGGTACATGTCCATGGGCGTCATCGACGCTG TAGCCTCCACCCCCAATATGTGCGAGATGTTTCACCTTCCGGTGCAGGCC GGCGACGATGAAATCCTGAGGCGGATGAGCCGGGGCTACACCGTGGCCAA GTACCTGGAGATCGTCGACCGAATCCGGACCCTGCTCCCAGACGCCGCGG TCACCTCTGATATCATCGTTGGCTTCCCCGGAGAGACGGAAGAGCAGTTC CAGAACACGCTCCGGCTCATGGAGACTGTCAAGTTTGACCAGGTCAACAC TGCAGCCTACAGCCCCAGACCCAATACGCCTGCCGCCATTTATGAGGAGC AGGTTCCCGATGATGTCAAATCAGACCGGCTGCAGCGGATCAACAGGCTG GCTGCCGACCACGCCTTGGAGCGAAACCAGCGCTACCTGGGCCGGGAGAT GGAGGTGTTGGTAGAGGGGCGGTACGTCAAGGACCCTCGTCTGGTCAAGG GCCGCAACCGCCAGGGCCGGCCTGTGCTGTTTGAAGGAGACATTGCCGAA CTCCGGGGCAAGCTCGTGCCAGTACTCATCACGGAGGTCAAATCATTCAT GCTGCTCGGGAAAGCGACAGGCGAAGCGACGTGA back to top
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