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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr15 | genome | chr15:297363..299897 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G00990.1 vs.
Match: EWM22483.1 (phage spo1 dna polymerase-related protein [Nannochloropsis gaditana]) HSP 1 Score: 347.8 bits (891), Expect = 4.300e-92 Identity = 178/252 (70.63%), Postives = 205/252 (81.35%), Query Frame = 0
Query: 127 APEASTSATEAVISSSTSPASVPQSGVTPTPNTRYASHTDFVQAMQGLTGDPLQSTGTNVVIYRGNIKAKIMVVGEAPGETEDIEGKPFVGRAGKLLDDILAAVGLDEDSVYITNVVLRRPPKNRTPLAPEVAWYRPLLMENIRLVDPHIILLAGACACKAVLTDEKRGITKIRGEWFERQFGGEGGMDGEGLRLCMPMFHPSYLLRNPSRRVDGPKWLTWQDIKEVRRRYDEVQRE---EGEW--GKEGEQ 374
A + +SA E V T P S+ V+P P+ RYA H DFVQA+QGL GDPLQ+ GT VVI+RGN AKIMV+GEAPGETED+EGKPFVGRAGKLLD ILA+VGLDE SVYITNVVLRRPP NRTP A EVAWY P LMEN+RLVDP IILLAGACACKA+L EK+GIT+IRG+WFER+FG EGG+DG+G RL MP+FHPSYLLRNPSR+V+GPKWLTWQDI+ VRRRYDE+ EG W GK+G++
Sbjct: 52 AERSPSSAAEQV---PTPPTSLT---VSPLPDARYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLDESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRYDELAGAGGGEGVWAPGKQGKE 297
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G00990.1 ID=NO15G00990.1|Name=NO15G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2462bp
TTGCCGGCCTCCGATCACCCCAATGAAGCGCTCTCTCCGCATATTTTTTG
AAAAATAAAAATGGTGCGCTCATAAGCAAACACAGAGTCTCATTCCAACA
TTTTGGAGCGCAGGGGACCACAAAGGCTGAACGACTATTCCAAACTCCAT
GCTCGCTCGCTCTCACATTTTGTTCCTTCTTCCCGCTGTAGTAATTTATA
TATTAACACATTTGCTTTCGTCATTTTAACCCATCAAGCTCTTCACTCAA
CCCTCCTGCCGCCCCCCAATCCCCCCCGATCCAGTTCCCGCCCGATTTCT
TCGACCCGTACCATCTCCCCCGCCTCCTGACAAAGCTTCATTACCAATGC
CAGCATGTCCTTGCCTGGCGCCACGCCTGCCTCCTTCATGGTTTTCAACA
ATTCGTGGGCCCGAGTCGCTTGTTTGGCCTTGTGCAGCGCCTGCATGGCG
AGATCGTAACTAGCATAGTCGCAAGTCACCCCCCGCCGGTCAGCCTCCAG
CACCAGTGTCAAGGCCATCTCCCACTCCCCTTCCTCGCCGCAGCCGCCTA
TCGCGCGATTGTAGGTCACCAGATCAGGAACCAATTCCCTGTATGTCATT
TCGTCAAGCGTCCATTGGAGCTGCCGCCAATTCTTGGCCGCCTCACAGGC
GCGGGCAACGAACCCGTATACCTCGTTGTCTAGCTTGTGCTCCGCGTCTT
TCATGTAGCTCAACACGTGGTTGGCCTCCTCGTACCGGCCTTGCTCCCCA
CACGCCTCAATAGCTAACACAAAACTCTGCCGATCTGGCTCTAAGCCCAG
CTCGACCATCTCTTCTAAGAGCCAGCAACCCGGTTCCCACTGTCCCTCCC
TCGCGCATGCCTTCAGTACCTTGTTGTAGATCTCGACCGTGGGAGTCTCG
AGCGTTTCGAGCAGGTTCAGACCTTCTTGCCAGCTCATATCCTCTCCGCC
CAGCGTTGTTACTTCGCGAGCAGAAGCTCTTGCACGAATTGTGGGAGAGG
AGCGGAAGGAGGGCTGCGGATGCCCCGGCACGAATGCCTGCGCAGTTGGC
AGCAGGACGACAAGGGTAAGGAGCAACGCTAGGGCCAGGGTGCCACCCAA
AGCGTCCAAGCGGCTTTGCCCCATGGTCATCTGTGAAACGACCATTATCG
CATGAGGTGTTTTGGTGAGAGTGGTCGAGTATGGGTGTGAGAAGGGTTAC
AAGAGTTAAAGTGTTCTTCTCATCATCATTTTTGCGTTCACGCAATGCAC
TCTCGAGACCAGACTCAGATCCTTCGTGTGTACACACCTAGCGCAGAACG
GAGCGATCTTCGAGGAAGCCAGGGGCTACATCGTGGGCTGCGTGGGGCCA
CTGATCTACAGAGGCTTGGCTGCGTGAGCACTGAGATGCGCTTTCCGAGC
AGTGCAAGTCGCATATCCATGTCAATGCTGCTGCTGGCGCGCATGTTGCG
ACTTGCCGCTCCGTCGTCGTTGTCGTCGCCGTCTTGCTTTTTGGTGTCTG
TCTCCCCCCTCAGGCTCCAAACCTCCTGCCGCTCGTTCATGAAGAAAAGG
CTGGCTACTTCCTTCTTATCCCACGCTAAGTCCTTTGAGGAGTCGTCTAT
CTCCTTGTTATCCTCTACAAATGCGCCAGAAGCCTCCACAAGCGCGACCG
AAGCAGTCATATCCTCATCCACTTCTCCAGCTTCAGTTCCCCAATCAGGG
GTCACCCCCACGCCCAACACACGCTACGCAAGTCATACCGACTTCGTCCA
AGCTATGCAAGGCCTGACGGGAGACCCCTTACAGTCTACGGGCACCAACG
TGGTAATCTATCGCGGCAACATAAAAGCCAAAATCATGGTTGTGGGAGAA
GCACCTGGTGAAACGGAGGACATCGAAGGTAAACCCTTTGTGGGCCGTGC
GGGGAAGCTGCTCGACGATATTCTGGCAGCTGTTGGCTTGGATGAGGACT
CTGTATATATAACCAATGTTGTCCTACGTCGTCCACCGAAGAACCGAACA
CCTCTCGCACCAGAAGTGGCGTGGTACCGACCTCTGCTAATGGAGAATAT
CCGTCTAGTCGATCCGCACATCATCTTGTTGGCGGGAGCGTGTGCCTGCA
AAGCCGTGCTGACGGATGAAAAGCGAGGCATTACCAAAATTCGGGGCGAG
TGGTTTGAGCGGCAGTTTGGAGGGGAGGGAGGGATGGATGGGGAGGGTCT
GAGGCTGTGCATGCCGATGTTTCACCCTTCTTACTTACTGAGGAATCCGA
GTAGGAGGGTGGACGGCCCCAAGTGGTTGACTTGGCAAGATATCAAGGAG
GTGCGTAGGCGATATGACGAGGTACAGCGGGAAGAGGGTGAGTGGGGTAA
GGAGGGGGAACAGGAGGGTAGTGACGGCAAGGTGCCGGCAGGGACCTTGA
CACCAGACGTGTGAGTAGCAGCCAGTCAAGGCATTGAAAGCAGCCCAATC
TGTGAAACGGCG back to topprotein sequence of NO15G00990.1 >NO15G00990.1-protein ID=NO15G00990.1-protein|Name=NO15G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MHSRDQTQILRVYTPSAERSDLRGSQGLHRGLRGATDLQRLGCVSTEMRF
PSSASRISMSMLLLARMLRLAAPSSLSSPSCFLVSVSPLRLQTSCRSFMK
KRLATSFLSHAKSFEESSISLLSSTNAPEASTSATEAVISSSTSPASVPQ
SGVTPTPNTRYASHTDFVQAMQGLTGDPLQSTGTNVVIYRGNIKAKIMVV
GEAPGETEDIEGKPFVGRAGKLLDDILAAVGLDEDSVYITNVVLRRPPKN
RTPLAPEVAWYRPLLMENIRLVDPHIILLAGACACKAVLTDEKRGITKIR
GEWFERQFGGEGGMDGEGLRLCMPMFHPSYLLRNPSRRVDGPKWLTWQDI
KEVRRRYDEVQREEGEWGKEGEQEGSDGKVPAGTLTPDV* back to topmRNA from alignment at chr15:297363..299897+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G00990.1 ID=NO15G00990.1|Name=NO15G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp|location=Sequence derived from alignment at chr15:297363..299897+ (Nannochloropsis oceanica)
TTGCCGGCCTCCGATCACCCCAATGAAGCGCTCTCTCCGCATATTTTTTG
AAAAATAAAAATGGTGCGCTCATAAGCAAACACAGAGTCTCATTCCAACA
TTTTGGAGCGCAGGGGACCACAAAGGCTGAACGACTATTCCAAACTCCAT
GCTCGCTCGCTCTCACATTTTGTTCCTTCTTCCCGCTGTAGTAATTTATA
TATTAACACATTTGCTTTCGTCATTTTAACCCATCAAGCTCTTCACTCAA
CCCTCCTGCCGCCCCCCAATCCCCCCCGATCCAGTTCCCGCCCGATTTCT
TCGACCCGTACCATCTCCCCCGCCTCCTGACAAAGCTTCATTACCAATGC
CAGCATGTCCTTGCCTGGCGCCACGCCTGCCTCCTTCATGGTTTTCAACA
ATTCGTGGGCCCGAGTCGCTTGTTTGGCCTTGTGCAGCGCCTGCATGGCG
AGATCGTAACTAGCATAGTCGCAAGTCACCCCCCGCCGGTCAGCCTCCAG
CACCAGTGTCAAGGCCATCTCCCACTCCCCTTCCTCGCCGCAGCCGCCTA
TCGCGCGATTGTAGGTCACCAGATCAGGAACCAATTCCCTGTATGTCATT
TCGTCAAGCGTCCATTGGAGCTGCCGCCAATTCTTGGCCGCCTCACAGGC
GCGGGCAACGAACCCGTATACCTCGTTGTCTAGCTTGTGCTCCGCGTCTT
TCATGTAGCTCAACACGTGGTTGGCCTCCTCGTACCGGCCTTGCTCCCCA
CACGCCTCAATAGCTAACACAAAACTCTGCCGATCTGGCTCTAAGCCCAG
CTCGACCATCTCTTCTAAGAGCCAGCAACCCGGTTCCCACTGTCCCTCCC
TCGCGCATGCCTTCAGTACCTTGTTGTAGATCTCGACCGTGGGAGTCTCG
AGCGTTTCGAGCAGGTTCAGACCTTCTTGCCAGCTCATATCCTCTCCGCC
CAGCGTTGTTACTTCGCGAGCAGAAGCTCTTGCACGAATTGTGGGAGAGG
AGCGGAAGGAGGGCTGCGGATGCCCCGGCACGAATGCCTGCGCAGTTGGC
AGCAGGACGACAAGGGTAAGGAGCAACGCTAGGGCCAGGGTGCCACCCAA
AGCGTCCAAGCGGCTTTGCCCCATGGTCATCTGTGAAACGACCATTATCG
CATGAGGTGTTTTGGTGAGAGTGGTCGAGTATGGGTGTGAGAAGGGTTAC
AAGAGTTAAAGTGTTCTTCTCATCATCATTTTTGCGTTCACGCAATGCAC
TCTCGAGACCAGACTCAGATCCTTCGTGTGTACACACCTAGCGCAGAACG
GAGCGATCTTCGAGGAAGCCAGGGGCTACATCGTGGGCTGCGTGGGGCCA
CTGATCTACAGAGGCTTGGCTGCGTGAGCACTGAGATGGTACGTGCCGAT
CACCGCCCCTCCCTCCGTCCCTCTCCCTCTCATACTTCTGCTGATATTTC
ACAACATGCAGCGCTTTCCGAGCAGTGCAAGTCGCATATCCATGTCAATG
CTGCTGCTGGCGCGCATGTTGCGACTTGCCGCTCCGTCGTCGTTGTCGTC
GCCGTCTTGCTTTTTGGTGTCTGTCTCCCCCCTCAGGCTCCAAACCTCCT
GCCGCTCGTTCATGAAGAAAAGGCTGGCTACTTCCTTCTTATCCCACGCT
AAGTCCTTTGAGGAGTCGTCTATCTCCTTGTTATCCTCTACAAATGCGCC
AGAAGCCTCCACAAGCGCGACCGAAGCAGTCATATCCTCATCCACTTCTC
CAGCTTCAGTTCCCCAATCAGGGGTCACCCCCACGCCCAACACACGCTAC
GCAAGTCATACCGACTTCGTCCAAGCTATGCAAGGCCTGACGGGAGACCC
CTTACAGTCTACGGGCACCAACGTGGTAATCTATCGCGGCAACATAAAAG
CCAAAATCATGGTTGTGGGAGAAGCACCTGGTGAAACGGAGGACATCGAA
GGTAAACCCTTTGTGGGCCGTGCGGGGAAGCTGCTCGACGATATTCTGGC
AGCTGTTGGCTTGGATGAGGACTCTGTATATATAACCAATGTTGTCCTAC
GTCGTCCACCGAAGAACCGAACACCTCTCGCACCAGAAGTGGCGTGGTAC
CGACCTCTGCTAATGGAGAATATCCGTCTAGTCGATCCGCACATCATCTT
GTTGGCGGGAGCGTGTGCCTGCAAAGCCGTGCTGACGGATGAAAAGCGAG
GCATTACCAAAATTCGGGGCGAGTGGTTTGAGCGGCAGTTTGGAGGGGAG
GGAGGGATGGATGGGGAGGGTCTGAGGCTGTGCATGCCGATGTTTCACCC
TTCTTACTTACTGAGGAATCCGAGTAGGAGGGTGGACGGCCCCAAGTGGT
TGACTTGGCAAGATATCAAGGAGGTGCGTAGGCGATATGACGAGGTACAG
CGGGAAGAGGGTGAGTGGGGTAAGGAGGGGGAACAGGAGGGTAGTGACGG
CAAGGTGCCGGCAGGGACCTTGACACCAGACGTGTGAGTAGCAGCCAGTC
AAGGCATTGAAAGCAGCCCAATCTGTGAAACGGCG back to topCoding sequence (CDS) from alignment at chr15:297363..299897+ >NO15G00990.1 ID=NO15G00990.1|Name=NO15G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr15:297363..299897+ (Nannochloropsis oceanica)
ATGCACTCTCGAGACCAGACTCAGATCCTTCGTGTGTACACACCTAGCGC
AGAACGGAGCGATCTTCGAGGAAGCCAGGGGCTACATCGTGGGCTGCGTG
GGGCCACTGATCTACAGAGGCTTGGCTGCGTGAGCACTGAGATGCGCTTT
CCGAGCAGTGCAAGTCGCATATCCATGTCAATGCTGCTGCTGGCGCGCAT
GTTGCGACTTGCCGCTCCGTCGTCGTTGTCGTCGCCGTCTTGCTTTTTGG
TGTCTGTCTCCCCCCTCAGGCTCCAAACCTCCTGCCGCTCGTTCATGAAG
AAAAGGCTGGCTACTTCCTTCTTATCCCACGCTAAGTCCTTTGAGGAGTC
GTCTATCTCCTTGTTATCCTCTACAAATGCGCCAGAAGCCTCCACAAGCG
CGACCGAAGCAGTCATATCCTCATCCACTTCTCCAGCTTCAGTTCCCCAA
TCAGGGGTCACCCCCACGCCCAACACACGCTACGCAAGTCATACCGACTT
CGTCCAAGCTATGCAAGGCCTGACGGGAGACCCCTTACAGTCTACGGGCA
CCAACGTGGTAATCTATCGCGGCAACATAAAAGCCAAAATCATGGTTGTG
GGAGAAGCACCTGGTGAAACGGAGGACATCGAAGGTAAACCCTTTGTGGG
CCGTGCGGGGAAGCTGCTCGACGATATTCTGGCAGCTGTTGGCTTGGATG
AGGACTCTGTATATATAACCAATGTTGTCCTACGTCGTCCACCGAAGAAC
CGAACACCTCTCGCACCAGAAGTGGCGTGGTACCGACCTCTGCTAATGGA
GAATATCCGTCTAGTCGATCCGCACATCATCTTGTTGGCGGGAGCGTGTG
CCTGCAAAGCCGTGCTGACGGATGAAAAGCGAGGCATTACCAAAATTCGG
GGCGAGTGGTTTGAGCGGCAGTTTGGAGGGGAGGGAGGGATGGATGGGGA
GGGTCTGAGGCTGTGCATGCCGATGTTTCACCCTTCTTACTTACTGAGGA
ATCCGAGTAGGAGGGTGGACGGCCCCAAGTGGTTGACTTGGCAAGATATC
AAGGAGGTGCGTAGGCGATATGACGAGGTACAGCGGGAAGAGGGTGAGTG
GGGTAAGGAGGGGGAACAGGAGGGTAGTGACGGCAAGGTGCCGGCAGGGA
CCTTGACACCAGACGTGTGA back to top
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