NO15G00970.1, NO15G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00970.1
Unique NameNO15G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1435
Alignment locationchr15:293465..294899 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:293465..294899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00970.1 vs.
Match: EWM22462.1 (myo-inositol 2-dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 606.3 bits (1562), Expect = 6.400e-170
Identity = 291/371 (78.44%), Postives = 335/371 (90.30%), Query Frame = 0 
Query:    1 MAFKQAVVVLLSLALHFPVLTWGFFLRMSRTPLGVGVVGCGRIGQIHGNTLAFHTPGARLVAITDPFEEMGKKLIEQTGGMPTYHKDYLELLDRDDVHAVVVASPTPYHVEQIMSAVERGKHVFCEKPISNDLSAIDACTQAAAKAGTKLILGFQRRFDINFQNVKKQITQGAIGKMRTFRIVSRDPAPPPAEYLKTSGGIFLDMSSHDFDMARFLVGSEIEEVYVQGASWGPEAKAAGDLDTQITLLRFQNGVFGTIENSRLCSFGYDQRVEVFGELGSLQGENRSPSTVLRSDAKGVTAGLPYSFFMDRYSEAYVGIIKAFVNKVTGGEGEGVEHLAGAMDGKATVLAGMAAKASVETGRPVHITEVGK 372
            M + ++  ++L  AL  PV+ + FFLRMS++PLGVGV+GCGRIGQIH NTLAF TPGARLVAITDPFE+MGKK+++QTGG+P+YHK+YL+LLD +D+ AVVVASPTPYHVEQIM+AVERGKHVFCEKPISNDL+ ID+C +AAAKAGTKLILGFQRRFD NFQ VK+QI QGAIGK+RT RIVSRDPAPPPA+YLKTSGGIFLDMSSHDFDMARFLVGS+IEEV+VQG +WGPEA  AGDLDTQITLLRF+NGVFGT+ENSRLCSFGYDQRVEVFGELGSLQGENRSPSTV RSDA+GVTAGLPYSFFMDRY +AYV I++AFV +V+G  G GVEHLA A DGKATV+AGMAAKASV+  R V ++E+G+
Sbjct:   39 MTYARSSALILIPALLLPVMPYAFFLRMSQSPLGVGVIGCGRIGQIHSNTLAFRTPGARLVAITDPFEDMGKKVLDQTGGIPSYHKNYLDLLDEEDIKAVVVASPTPYHVEQIMAAVERGKHVFCEKPISNDLATIDSCIEAAAKAGTKLILGFQRRFDANFQAVKQQIVQGAIGKVRTIRIVSRDPAPPPADYLKTSGGIFLDMSSHDFDMARFLVGSDIEEVFVQGTAWGPEAAGAGDLDTQITLLRFENGVFGTLENSRLCSFGYDQRVEVFGELGSLQGENRSPSTVTRSDAEGVTAGLPYSFFMDRYGDAYVDIVRAFVREVSGDGGGGVEHLASAADGKATVMAGMAAKASVQGRRLVKVSEMGR 409
The following BLAST results are available for this feature:
BLAST of NO15G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22462.16.400e-17078.44myo-inositol 2-dehydrogenase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00970NO15G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00970.1NO15G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00970.1.cds1NO15G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00970.1 ID=NO15G00970.1|Name=NO15G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp
AGCCTATCATCAGACCCACTGGTCTCGCCACGCAAGCAAGCGTCCGCCGT
CCGCCTGCCGCATCCGTATTACATCGGTCACACTCGAATCGAAGCATGGC
CTTCAAGCAGGCTGTCGTCGTCCTTCTAAGTCTCGCCCTCCATTTCCCGG
TCCTAACTTGGGGCTTCTTTCTCCGCATGTCCCGAACACCGTTGGGAGTA
GGCGTCGTTGGCTGCGGGCGCATCGGACAGATACACGGCAATACCCTCGC
TTTCCACACGCCAGGCGCGCGGCTTGTGGCCATTACGGACCCCTTCGAGG
AGATGGGTAAGAAGTTAATAGAACAAACGGGTGGCATGCCCACCTACCAC
AAGGACTACTTGGAGCTGCTTGACCGCGACGATGTGCATGCCGTGGTGGT
GGCTTCACCCACGCCCTACCACGTGGAGCAAATCATGTCGGCCGTCGAGC
GTGGCAAACACGTCTTCTGTGAGAAACCGATCTCGAACGATCTCTCTGCT
ATTGACGCCTGCACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTCATCCT
CGGCTTCCAACGTCGCTTCGACATCAACTTTCAAAATGTCAAGAAGCAGA
TTACGCAAGGCGCAATTGGCAAAATGCGGACTTTCCGCATCGTAAGTCGG
GATCCGGCCCCACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGCATCTT
TTTGGACATGAGCAGCCACGATTTTGATATGGCTCGTTTCTTGGTGGGGA
GCGAGATTGAGGAGGTCTACGTGCAAGGAGCCTCGTGGGGGCCCGAGGCT
AAGGCGGCAGGGGACCTGGACACTCAAATCACACTCTTACGGTTCCAAAA
TGGGGTGTTTGGAACAATTGAAAACTCTCGTTTGTGTTCTTTCGGGTATG
ACCAGCGTGTGGAGGTCTTTGGGGAGCTGGGGTCGCTGCAGGGGGAGAAT
CGGAGCCCGAGCACAGTGCTGCGTTCGGATGCCAAGGGCGTGACTGCTGG
TCTGCCGTACTCGTTTTTTATGGACCGGTACAGCGAGGCCTATGTGGGGA
TTATCAAGGCGTTTGTGAACAAAGTAACAGGCGGAGAAGGGGAGGGAGTC
GAGCATTTGGCGGGTGCGATGGACGGGAAGGCCACGGTTCTGGCGGGCAT
GGCGGCGAAGGCGTCGGTGGAGACAGGAAGGCCGGTCCATATCACGGAGG
TGGGAAAGTAGAATTTGGAGGCAGGAAAAAGGAGGGAGAGAGAGATGGCT
GATAAATTATTTTCGAAGTAAGGGAAAAGGAAGGAGGAAGAAGAGACGAT
GTGTGTATAGTGAGGTCAAAAGCTGTTACTGCGCTTTGTGTTGTCACGGT
CGGAAGGAGTCCTTCTTCACTTGTGTCGTTACGAGACGTGCACGGGCAAG
GAAAAAAAAGGAGACCAAGAACTTAAGACTCGTCT
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protein sequence of NO15G00970.1

>NO15G00970.1-protein ID=NO15G00970.1-protein|Name=NO15G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MAFKQAVVVLLSLALHFPVLTWGFFLRMSRTPLGVGVVGCGRIGQIHGNT
LAFHTPGARLVAITDPFEEMGKKLIEQTGGMPTYHKDYLELLDRDDVHAV
VVASPTPYHVEQIMSAVERGKHVFCEKPISNDLSAIDACTQAAAKAGTKL
ILGFQRRFDINFQNVKKQITQGAIGKMRTFRIVSRDPAPPPAEYLKTSGG
IFLDMSSHDFDMARFLVGSEIEEVYVQGASWGPEAKAAGDLDTQITLLRF
QNGVFGTIENSRLCSFGYDQRVEVFGELGSLQGENRSPSTVLRSDAKGVT
AGLPYSFFMDRYSEAYVGIIKAFVNKVTGGEGEGVEHLAGAMDGKATVLA
GMAAKASVETGRPVHITEVGK*
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mRNA from alignment at chr15:293465..294899+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00970.1 ID=NO15G00970.1|Name=NO15G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp|location=Sequence derived from alignment at chr15:293465..294899+ (Nannochloropsis oceanica)
AGCCTATCATCAGACCCACTGGTCTCGCCACGCAAGCAAGCGTCCGCCGT
CCGCCTGCCGCATCCGTATTACATCGGTCACACTCGAATCGAAGCATGGC
CTTCAAGCAGGCTGTCGTCGTCCTTCTAAGTCTCGCCCTCCATTTCCCGG
TCCTAACTTGGGGCTTCTTTCTCCGCATGTCCCGAACACCGTTGGGAGTA
GGCGTCGTTGGCTGCGGGCGCATCGGACAGATACACGGCAATACCCTCGC
TTTCCACACGCCAGGCGCGCGGCTTGTGGCCATTACGGACCCCTTCGAGG
AGATGGGTAAGAAGTTAATAGAACAAACGGGTGGCATGCCCACCTACCAC
AAGGACTACTTGGAGCTGCTTGACCGCGACGATGTGCATGCCGTGGTGGT
GGCTTCACCCACGCCCTACCACGTGGAGCAAATCATGTCGGCCGTCGAGC
GTGGCAAACACGTCTTCTGTGAGAAACCGATCTCGAACGATCTCTCTGCT
ATTGACGCCTGCACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTCATCCT
CGGCTTCCAACGTCGCTTCGACATCAACTTTCAAAATGTCAAGAAGCAGA
TTACGCAAGGCGCAATTGGCAAAATGCGGACTTTCCGCATCGTAAGTCGG
GATCCGGCCCCACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGCATCTT
TTTGGACATGAGCAGCCACGATTTTGATATGGCTCGTTTCTTGGTGGGGA
GCGAGATTGAGGAGGTCTACGTGCAAGGAGCCTCGTGGGGGCCCGAGGCT
AAGGCGGCAGGGGACCTGGACACTCAAATCACACTCTTACGGTTCCAAAA
TGGGGTGTTTGGAACAATTGAAAACTCTCGTTTGTGTTCTTTCGGGTATG
ACCAGCGTGTGGAGGTCTTTGGGGAGCTGGGGTCGCTGCAGGGGGAGAAT
CGGAGCCCGAGCACAGTGCTGCGTTCGGATGCCAAGGGCGTGACTGCTGG
TCTGCCGTACTCGTTTTTTATGGACCGGTACAGCGAGGCCTATGTGGGGA
TTATCAAGGCGTTTGTGAACAAAGTAACAGGCGGAGAAGGGGAGGGAGTC
GAGCATTTGGCGGGTGCGATGGACGGGAAGGCCACGGTTCTGGCGGGCAT
GGCGGCGAAGGCGTCGGTGGAGACAGGAAGGCCGGTCCATATCACGGAGG
TGGGAAAGTAGAATTTGGAGGCAGGAAAAAGGAGGGAGAGAGAGATGGCT
GATAAATTATTTTCGAAGTAAGGGAAAAGGAAGGAGGAAGAAGAGACGAT
GTGTGTATAGTGAGGTCAAAAGCTGTTACTGCGCTTTGTGTTGTCACGGT
CGGAAGGAGTCCTTCTTCACTTGTGTCGTTACGAGACGTGCACGGGCAAG
GAAAAAAAAGGAGACCAAGAACTTAAGACTCGTCT
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Coding sequence (CDS) from alignment at chr15:293465..294899+

>NO15G00970.1 ID=NO15G00970.1|Name=NO15G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr15:293465..294899+ (Nannochloropsis oceanica)
ATGGCCTTCAAGCAGGCTGTCGTCGTCCTTCTAAGTCTCGCCCTCCATTT
CCCGGTCCTAACTTGGGGCTTCTTTCTCCGCATGTCCCGAACACCGTTGG
GAGTAGGCGTCGTTGGCTGCGGGCGCATCGGACAGATACACGGCAATACC
CTCGCTTTCCACACGCCAGGCGCGCGGCTTGTGGCCATTACGGACCCCTT
CGAGGAGATGGGTAAGAAGTTAATAGAACAAACGGGTGGCATGCCCACCT
ACCACAAGGACTACTTGGAGCTGCTTGACCGCGACGATGTGCATGCCGTG
GTGGTGGCTTCACCCACGCCCTACCACGTGGAGCAAATCATGTCGGCCGT
CGAGCGTGGCAAACACGTCTTCTGTGAGAAACCGATCTCGAACGATCTCT
CTGCTATTGACGCCTGCACTCAAGCTGCGGCTAAGGCGGGCACCAAGCTC
ATCCTCGGCTTCCAACGTCGCTTCGACATCAACTTTCAAAATGTCAAGAA
GCAGATTACGCAAGGCGCAATTGGCAAAATGCGGACTTTCCGCATCGTAA
GTCGGGATCCGGCCCCACCCCCTGCTGAGTACCTCAAGACAAGCGGCGGC
ATCTTTTTGGACATGAGCAGCCACGATTTTGATATGGCTCGTTTCTTGGT
GGGGAGCGAGATTGAGGAGGTCTACGTGCAAGGAGCCTCGTGGGGGCCCG
AGGCTAAGGCGGCAGGGGACCTGGACACTCAAATCACACTCTTACGGTTC
CAAAATGGGGTGTTTGGAACAATTGAAAACTCTCGTTTGTGTTCTTTCGG
GTATGACCAGCGTGTGGAGGTCTTTGGGGAGCTGGGGTCGCTGCAGGGGG
AGAATCGGAGCCCGAGCACAGTGCTGCGTTCGGATGCCAAGGGCGTGACT
GCTGGTCTGCCGTACTCGTTTTTTATGGACCGGTACAGCGAGGCCTATGT
GGGGATTATCAAGGCGTTTGTGAACAAAGTAACAGGCGGAGAAGGGGAGG
GAGTCGAGCATTTGGCGGGTGCGATGGACGGGAAGGCCACGGTTCTGGCG
GGCATGGCGGCGAAGGCGTCGGTGGAGACAGGAAGGCCGGTCCATATCAC
GGAGGTGGGAAAGTAG
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Synonyms
Publications