NO15G00890.2, NO15G00890.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00890.2
Unique NameNO15G00890.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2613
Alignment locationchr15:272932..275926 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:272932..275926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00890.2 vs.
Match: XP_005852783.1 (ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526]; EKU23052.1 ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526]; EWM22458.1 ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana])

HSP 1 Score: 261.2 bits (666), Expect = 3.700e-66
Identity = 139/205 (67.80%), Postives = 159/205 (77.56%), Query Frame = 0 
Query:   65 VRPWRALPLLIFRLVLLSTLQPTMSFIAFQTQRLASTLRICSTTATTTIYPTRAFRATPTCGLQINIHIRGKRTGGEEYLNDAYLEYTKRLRPVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELADVLYKRLEEGGSRLVFVIGGAEGLPSALK-NKELWSLSKLTFTHQWARVLLTEQIYRATEIKKGSGYHKE 269
            +R W A  +L F    L+ +Q  M F AF      S  R C     +  + T AFR TP CGLQ+ IHIRGKR+GGEE+LNDAYLEYTKRLRPVL L T+WHKTD EL+AA+AKEKAPVICLDE GKQL S+ELAD+LYKRLEEGG+RL  VIGGAEGLP  L+ +KELWSLS+LTFTHQWARVLL EQIYRA+EIK+GSGYHKE
Sbjct:   21 IRFWTAFSVLFF----LNFVQSNM-FFAF------SHTRYCRRLVRSPTF-THAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
The following BLAST results are available for this feature:
BLAST of NO15G00890.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852783.13.700e-6667.80ribosomal rna large subunit methyltransferase h [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00890NO15G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00890.2NO15G00890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00890.2.cds1NO15G00890.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00890.2.cds2NO15G00890.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00890.2.cds3NO15G00890.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00890.2 ID=NO15G00890.2|Name=NO15G00890.2|organism=Nannochloropsis oceanica|type=mRNA|length=2613bp
GTCGTTGTCCTCCTCATCTTCTTTCCTTCGCATTCACCCATTCCTCATCA
TATTCCTCCTTCATTTTTAAAATTCTTCACAAATACCACGACTTCTCCCA
CCATTCCCTCTCACTCATTTGAAACCACACCCTCTTCGCTTTTCCTGCCA
TGCACTCTTTTCTTCTAATTAATCTGACAACTCCTTCTTGCAATCATTCT
TCTTCTTATTCATCATCATGCCGAGACTTTTGACGATGGCGACGACTCCG
TCTCAGCGGCCCCCGCCCTCTCCTCCTTTCCCTCCCCCTCCTCCTCCTTC
CTATTCTTCTCCACCAACTCCTCCTGCTCCTCCCTCTCTAGCCCCTCCAA
AAAGGAAACCAAGGACTGTGTGCTCGAAGCCAAGCCCGTCACTTCAGCTG
CCTTAGAGGAAGCCGACGAGGTCAAGGACAGGAGCGACGATCGTTCCTCC
CCTGCCAGCGGCCCAACATACTCATAGATTGTTACGAACACGGACTGGGT
CGCAGGGTCCCTTATCTTCTCGATCCATATGACGCCGTCCATGTAGCTGA
CATCTGCGAAGGCAGTGCCTAGATTTCCCACATTTTGAGGGAGGGGGAGC
TTCCATTGTTTGCCTGCCTTGGAGAAGGGGCTGTTGATGTTGACGTAGTT
GGAAGTGAATTCGAAAACCAGGCGGCCTTGTGGCGTCAGGTTGTATTTTG
CGGAGGATACGAGAGACTCCCAGTACTTGTCTTTAAACTTCATGACATTC
TCGAGGCGGTCGTCGCGGTGGATATCATAATACACACGAGTGCCGGGGGG
GAGGATTTTATACCTCTCTTCCGTGGTGAATGCCAACTTCCATCTTCCCT
TCATCGCCTCAGCCAAGCCTTCCAAAGTACGAACAGGGGAGCCGTTCTTG
ATCAAGGTATCGGCGTACCCAATCATCATATCCCGGGTCTCGGGGGCGAG
CATCCCGGCGTTGACATCTTTTTCTTCCATGAATTTGAGGCAGCACAAAA
GCTCTTGCCATTCAAAGAGGACTTCGTCGGGCGGTCGATACATCTCACGG
TCCCATCCTTTGGGTATGTACTTGGTCTGAGAACGTTGTAGTGGGCTGGA
GGGGGGAGGGGTGGGCGTGGAGGTGGCGTATCTGAATAGGCTGCTGCGGG
TTGAGGAGGATAATGAGGAAGAGGAGGATGGTCTGCTGATGACGAGGGCA
TGCGGGATGAAGGCGCTTGCAATCGGAGCGCATAGGCCCAGGGCAGCCGT
GACAACACCAGCAGCCGTCCCTGCTAGTAGCATAGCAGTACCTCTTATTC
TTCTTGGTGGTGGTGCCATGGCCTACGTACTGGAGTGCTAGTTGCTGTGT
GTGTCATGTTGGGAAGGAAGAGGGGAGGTCGATCAGTGTTGAGAAGTTGA
ATAACTGAGCAAAGCAAAACCACAGACTACAACAGCACAAGTGTGGTGTA
ATCTACCCGTACTTCTGATACTACTTGTGCGTGCCTGGGTGTGTCATGGT
CAACTGCATTGCGAGAAATATCTAGATGGAATCAGGTTTTCTTCAAGAAA
GTTGCTTCAACCCACCACAGTTCTTCACTTCTCTAACAAACCTTACCACT
GTGTCCACACGCACCGACAGGCATATACAAGGGCAACGAAGTTTATATCA
AGGAGCGACCGCAGCATGCGCGAAGCTGGGACACGATTTCTGTAAAGGGT
TCTGGCGGATGGGAGACGTGCGGCCGTGGAGGGCACTTCCTCTTCTGATT
TTTCGCCTCGTACTCTTGAGCACGTTGCAGCCGACCATGTCTTTCATAGC
TTTCCAAACCCAGCGCCTCGCCTCCACCCTGCGCATCTGTTCTACAACAG
CCACCACCACCATTTACCCCACACGCGCCTTTCGGGCCACCCCGACCTGC
GGCCTCCAAATCAACATTCACATACGGGGCAAGCGCACGGGCGGCGAAGA
ATACCTCAACGACGCTTACCTTGAGTACACAAAGCGCCTGAGACCTGTTT
TAGAACTCGAGACCATATGGCACAAGACAGATGAGGAGCTAAAGGCTGCC
GTAGCCAAGGAGAAAGCACCTGTTATTTGTCTCGATGAACGGGGGAAACA
GCTACCGTCATTAGAGTTAGCGGACGTGCTTTATAAGCGATTGGAAGAGG
GTGGTTCTCGGCTAGTGTTTGTGATCGGGGGCGCCGAGGGCCTGCCCTCC
GCCTTGAAAAACAAGGAGCTTTGGAGTTTGTCCAAGTTGACCTTCACACA
TCAGTGGGCTCGTGTTTTGCTGACAGAGCAGATATATCGAGCGACGGAGA
TAAAGAAGGGAAGTGGATATCATAAGGAGTAGTGAGAGCTTCGTTGTGGG
AGAGGGAATCCCCCATTCTAGGTGTGCTTATTCAGGGTTCACATTTATTT
TGTTCGTAAGTGAGCTGGGAAGAGGGGATGAAAGCTCAGGGAAAGTGTGA
ATTCTTATGGATCTTAAACATAATGAAGGGAAATTCAAATGAAGAAAAGC
AATGAGTCACGGATATGAAGATCCGGGTACATGCTTATCTTGGATAGAAA
CACACAGGGAAGTGCGAGGAAAGGAAGTGGAAGAGGACGTTGGAACTCGC
GTGGATAGTTCTG
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protein sequence of NO15G00890.2

>NO15G00890.2-protein ID=NO15G00890.2-protein|Name=NO15G00890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MESGFLQESCFNPPQFFTSLTNLTTVSTRTDRHIQGQRSLYQGATAACAK
LGHDFCKGFWRMGDVRPWRALPLLIFRLVLLSTLQPTMSFIAFQTQRLAS
TLRICSTTATTTIYPTRAFRATPTCGLQINIHIRGKRTGGEEYLNDAYLE
YTKRLRPVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELAD
VLYKRLEEGGSRLVFVIGGAEGLPSALKNKELWSLSKLTFTHQWARVLLT
EQIYRATEIKKGSGYHKE*
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mRNA from alignment at chr15:272932..275926+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00890.2 ID=NO15G00890.2|Name=NO15G00890.2|organism=Nannochloropsis oceanica|type=mRNA|length=2995bp|location=Sequence derived from alignment at chr15:272932..275926+ (Nannochloropsis oceanica)
GTCGTTGTCCTCCTCATCTTCTTTCCTTCGCATTCACCCATTCCTCATCA
TATTCCTCCTTCATTTTTAAAATTCTTCACAAATACCACGACTTCTCCCA
CCATTCCCTCTCACTCATTTGAAACCACACCCTCTTCGCTTTTCCTGCCA
TGCACTCTTTTCTTCTAATTAATCTGACAACTCCTTCTTGCAATCATTCT
TCTTCTTATTCATCATCATGCCGAGACTTTTGACGATGGCGACGACTCCG
TCTCAGCGGCCCCCGCCCTCTCCTCCTTTCCCTCCCCCTCCTCCTCCTTC
CTATTCTTCTCCACCAACTCCTCCTGCTCCTCCCTCTCTAGCCCCTCCAA
AAAGGAAACCAAGGACTGTGTGCTCGAAGCCAAGCCCGTCACTTCAGCTG
CCTTAGAGGAAGCCGACGAGGTCAAGGACAGGAGCGACGATCGTTCCTCC
CCTGCCAGCGGCCCAACATACTCATAGATTGTTACGAACACGGACTGGGT
CGCAGGGTCCCTTATCTTCTCGATCCATATGACGCCGTCCATGTAGCTGA
CATCTGCGAAGGCAGTGCCTAGATTTCCCACATTTTGAGGGAGGGGGAGC
TTCCATTGTTTGCCTGCCTTGGAGAAGGGGCTGTTGATGTTGACGTAGTT
GGAAGTGAATTCGAAAACCAGGCGGCCTTGTGGCGTCAGGTTGTATTTTG
CGGAGGATACGAGAGACTCCCAGTACTTGTCTTTAAACTTCATGACATTC
TCGAGGCGGTCGTCGCGGTGGATATCATAATACACACGAGTGCCGGGGGG
GAGGATTTTATACCTCTCTTCCGTGGTGAATGCCAACTTCCATCTTCCCT
TCATCGCCTCAGCCAAGCCTTCCAAAGTACGAACAGGGGAGCCGTTCTTG
ATCAAGGTATCGGCGTACCCAATCATCATATCCCGGGTCTCGGGGGCGAG
CATCCCGGCGTTGACATCTTTTTCTTCCATGAATTTGAGGCAGCACAAAA
GCTCTTGCCATTCAAAGAGGACTTCGTCGGGCGGTCGATACATCTCACGG
TCCCATCCTTTGGGTATGTACTTGGTCTGAGAACGTTGTAGTGGGCTGGA
GGGGGGAGGGGTGGGCGTGGAGGTGGCGTATCTGAATAGGCTGCTGCGGG
TTGAGGAGGATAATGAGGAAGAGGAGGATGGTCTGCTGATGACGAGGGCA
TGCGGGATGAAGGCGCTTGCAATCGGAGCGCATAGGCCCAGGGCAGCCGT
GACAACACCAGCAGCCGTCCCTGCTAGTAGCATAGCAGTACCTCTTATTC
TTCTTGGTGGTGGTGCCATGGCCTACGTACTGGAGTGCTAGTTGCTGTGT
GTGTCATGTTGGGAAGGAAGAGGGGAGGTCGATCAGTGTTGAGAAGTTGA
ATAACTGAGCAAAGCAAAACCACAGACTACAACAGCACAAGTGTGGTGTA
ATCTACCCGTACTTCTGATACTACTTGTGCGTGCCTGGGTGTGTCATGGT
CAACTGCATTGCGAGAAATATCTAGATGGAATCAGGTTTTCTTCAAGAAA
GTTGCTTCAACCCACCACAGTTCTTCACTTCTCTAACAAACCTTACCACT
GTGTCCACACGCACCGACAGGCATATACAAGGGCAACGAAGTTTATATCA
AGGAGCGACCGCAGCATGCGCGAAGCTGGGACACGATTTCTGTAAAGGGT
TCTGGCGGATGGGAGACGTGCGGCCGTGGAGGTACGCCAAAAAAAAAGAC
CCTCGGGCTCCATCTTTAAGAATCGTTTATGCAATTTGTGCTCTTTCGAA
ATCCATATTCGACAGACCCTCACAATGATTTAGCTCAACGCTTCCTCTCC
GCCCTCGTGTCCTCAATCCCAAACCCCAAACCCCATCCCTTCTGTCCCCA
CCCGTACCAGGGCACTTCCTCTTCTGATTTTTCGCCTCGTACTCTTGAGC
ACGTTGCAGCCGACCATGTCTTTCATAGCTTTCCAAACCCAGCGCCTCGC
CTCCACCCTGCGCATCTGTTCTACAACAGCCACCACCACCATTTACCCCA
CACGCGCCTTTCGGGCCACCCCGACCTGCGGCCTCCAAATCAACATTCAC
ATACGGGGCAAGCGCACGGGCGGCGAAGAATACCTCAACGACGCTTACCT
TGAGTACACAAAGCGCCTGAGACCTGTTTTAGAACTCGAGACCATATGGC
ACAAGACAGATGAGGAGCTAAAGGCTGCCGTAGCCAAGGAGAAAGCACCT
GTTATTTGTCTCGATGAACGGGGGAAACAGCTACCGTCATTAGAGTTAGC
GGACGTGCTTTATAAGCGATTGGAAGAGGGTAAGTGAAAGACAGGCAAAA
AGAGTTTTGGTGTAATATCAAAAAATTGTGACATAGGTCATTGGAAGCAT
TCATGGCTTTCCTTTCATTGTCTTTATGCGACTCCTGGCCGTTTTCTCGC
TTTATCTTCGTCTAGAGCCGCCAAGCATTGTGCCATGTCCGCCCTACACA
TTTCAGCTCCTTTCCCCTACCCCTCCCTTCAGGTGGTTCTCGGCTAGTGT
TTGTGATCGGGGGCGCCGAGGGCCTGCCCTCCGCCTTGAAAAACAAGGAG
CTTTGGAGTTTGTCCAAGTTGACCTTCACACATCAGTGGGCTCGTGTTTT
GCTGACAGAGCAGATATATCGAGCGACGGAGATAAAGAAGGGAAGTGGAT
ATCATAAGGAGTAGTGAGAGCTTCGTTGTGGGAGAGGGAATCCCCCATTC
TAGGTGTGCTTATTCAGGGTTCACATTTATTTTGTTCGTAAGTGAGCTGG
GAAGAGGGGATGAAAGCTCAGGGAAAGTGTGAATTCTTATGGATCTTAAA
CATAATGAAGGGAAATTCAAATGAAGAAAAGCAATGAGTCACGGATATGA
AGATCCGGGTACATGCTTATCTTGGATAGAAACACACAGGGAAGTGCGAG
GAAAGGAAGTGGAAGAGGACGTTGGAACTCGCGTGGATAGTTCTG
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Coding sequence (CDS) from alignment at chr15:272932..275926+

>NO15G00890.2 ID=NO15G00890.2|Name=NO15G00890.2|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr15:272932..275926+ (Nannochloropsis oceanica)
ATGGAATCAGGTTTTCTTCAAGAAAGTTGCTTCAACCCACCACAGTTCTT
CACTTCTCTAACAAACCTTACCACTGTGTCCACACGCACCGACAGGCATA
TACAAGGGCAACGAAGTTTATATCAAGGAGCGACCGCAGCATGCGCGAAG
CTGGGACACGATTTCTGTAAAGGGTTCTGGCGGATGGGAGACGTGCGGCC
GTGGAGGGCACTTCCTCTTCTGATTTTTCGCCTCGTACTCTTGAGCACGT
TGCAGCCGACCATGTCTTTCATAGCTTTCCAAACCCAGCGCCTCGCCTCC
ACCCTGCGCATCTGTTCTACAACAGCCACCACCACCATTTACCCCACACG
CGCCTTTCGGGCCACCCCGACCTGCGGCCTCCAAATCAACATTCACATAC
GGGGCAAGCGCACGGGCGGCGAAGAATACCTCAACGACGCTTACCTTGAG
TACACAAAGCGCCTGAGACCTGTTTTAGAACTCGAGACCATATGGCACAA
GACAGATGAGGAGCTAAAGGCTGCCGTAGCCAAGGAGAAAGCACCTGTTA
TTTGTCTCGATGAACGGGGGAAACAGCTACCGTCATTAGAGTTAGCGGAC
GTGCTTTATAAGCGATTGGAAGAGGGTGGTTCTCGGCTAGTGTTTGTGAT
CGGGGGCGCCGAGGGCCTGCCCTCCGCCTTGAAAAACAAGGAGCTTTGGA
GTTTGTCCAAGTTGACCTTCACACATCAGTGGGCTCGTGTTTTGCTGACA
GAGCAGATATATCGAGCGACGGAGATAAAGAAGGGAAGTGGATATCATAA
GGAGTAG
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Synonyms
Publications