NO15G00850.1, NO15G00850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00850.1
Unique NameNO15G00850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr15:260949..262511 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:260949..262511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G00850.1 vs.
Match: XP_005854054.1 (adipocyte plasma membrane-associated [Nannochloropsis gaditana CCMP526]; EKU22301.1 adipocyte plasma membrane-associated [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 672.5 bits (1734), Expect = 1.000e-189
Identity = 348/528 (65.91%), Postives = 405/528 (76.70%), Query Frame = 0 
Query:    1 MPPRTRSQTRGSSDITGTSAKSRAKGINGEEEGVEEEGLGLCPLVTPFYVLLAIAVAVGSGITHKILQGPFHPVTWQNPPELVVLYVNHDLEGAEHLFLNQVVGPESIAMGSNDELYLSLNDGRVVRTDSLYRHKTTVFFTGGVIKAERGGKGKEGGT----LPNGESEKELMAWCSAEMDAMRFSESTEGKCGRPLGLRFINESNILYIADAYHGIFTLDAATLHVQHLVAPSAPSFLPPSSI---PLHPGVQLPLRFSNDLDIVPGTGGDFFFSDSTWGWSRAEHAVDILDGAPRGRLFRYVALTREIEPVICGLHFANGVQCLGEVKEVGEKGWLPHFVLVVESTRFRILKVDMWAWAEEAGKEGREDALRNYCDEGCGFPPFVSVFAEGLPGLPDNIRLHRQVEGG---REGGLVGMGVEENVLLLGMGAKNARPFALLQFLYQRPWLRLVLGALVPLKYFHTFMPKYGLGGILSLEGSVLRVLQDPSGRTPFVSELHIHPRTGDLLLGSFRNRFLSKVTLSAL 519
            MPPRTRSQ  G++     S   +   ++GEEEGV EEG+G  P +TPFYVL+A+ V +GS +  KIL GPF PV W+ PPELV L VNHDL GAEHLFLN+VVGPESIA+GS  E+Y SLNDGR+VRTDS Y + TTVFFTGGV+KAE+ G+ K+G      LPNG  E+ LMAWCSAEMDAMRFS STE  CGRPLGLRF+ E N LYIADAYHGIFTLD  TLHV+HLVAPSA S  PPSS     LHPGV+ PL F+NDL +V  T GD FFSDSTW WSRA HAV++LDG PRGRLFRYV  T  +EPV+CGLHFANGVQ LGE +E    G LP  VLVVESTRFRILKVD+ AWA  A ++ +  AL+  C+E    PPF SV  EGLPGLPDN+RL R+ E G   +EG L G G EE VL+LGMG KNA+PF+LL FLYQ   LRL+LGAL+PL YFH FMPKYG+ G+LSLEG +LRVLQDP+GRTPF+SE+H+HP TGDLLLGSFRN+F+ +VT+SAL
Sbjct:    1 MPPRTRSQIAGNAG----SRTGKGNSLSGEEEGVSEEGMGYLPFITPFYVLMAVVVVIGSFLAFKILHGPFKPVLWKEPPELVSLLVNHDLAGAEHLFLNRVVGPESIAVGSEKEMYFSLNDGRIVRTDSKYGNMTTVFFTGGVVKAEKAGQ-KDGNARERRLPNGGQERSLMAWCSAEMDAMRFSTSTESLCGRPLGLRFVRELNQLYIADAYHGIFTLDPVTLHVRHLVAPSA-STPPPSSSSSPALHPGVRAPLGFTNDLSVVAST-GDIFFSDSTWAWSRALHAVEVLDGGPRGRLFRYVGATGAVEPVLCGLHFANGVQVLGEEEET-RAGRLPASVLVVESTRFRILKVDLGAWA-RAEEDVKARALQ-ACEEESALPPFASVLVEGLPGLPDNLRLLRREEAGACSKEGWLGGEG-EEAVLMLGMGVKNAKPFSLLHFLYQHLALRLLLGALIPLPYFHYFMPKYGVAGVLSLEGRLLRVLQDPTGRTPFLSEVHVHPETGDLLLGSFRNKFVGRVTVSAL 517
The following BLAST results are available for this feature:
BLAST of NO15G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854054.11.000e-18965.91adipocyte plasma membrane-associated [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00850NO15G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00850.1NO15G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00850.1.cds1NO15G00850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00850.1 ID=NO15G00850.1|Name=NO15G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
ATGCCACCACGCACACGATCACAGACTAGAGGGAGCAGCGATATCACTGG
CACCTCCGCCAAAAGCAGAGCAAAGGGCATCAACGGGGAGGAAGAAGGCG
TGGAAGAGGAAGGCCTTGGACTCTGTCCCTTGGTGACACCCTTTTATGTC
CTTCTAGCAATCGCGGTAGCCGTAGGCTCGGGCATCACCCACAAAATCCT
ACAGGGCCCTTTTCATCCTGTAACATGGCAAAATCCGCCTGAGCTGGTGG
TATTGTATGTAAATCATGACTTGGAAGGGGCAGAGCACCTCTTTCTCAAT
CAGGTGGTGGGACCCGAGAGTATCGCTATGGGCAGCAACGACGAGCTTTA
CTTGAGCTTGAATGACGGCCGGGTAGTGCGCACGGACAGTTTGTACAGGC
ATAAGACCACTGTTTTTTTCACTGGTGGGGTCATCAAGGCTGAGCGAGGG
GGAAAGGGGAAAGAAGGAGGGACTTTGCCAAATGGGGAAAGCGAGAAGGA
GCTCATGGCCTGGTGCAGCGCCGAGATGGACGCCATGCGTTTTTCTGAAT
CCACCGAAGGCAAATGCGGCCGTCCCCTGGGGTTGCGCTTTATTAATGAG
TCCAATATTCTATACATCGCCGATGCCTACCACGGCATCTTCACCCTCGA
CGCCGCCACCCTCCACGTCCAGCACCTTGTCGCGCCCTCCGCGCCTTCCT
TCCTCCCTCCCTCCTCCATCCCTCTGCACCCAGGGGTTCAGCTGCCCCTC
CGTTTCTCTAACGACTTGGACATTGTCCCTGGCACGGGCGGAGACTTCTT
TTTCTCGGATTCGACCTGGGGCTGGTCCCGAGCGGAACATGCTGTCGATA
TCCTGGACGGAGCGCCTCGTGGGCGATTGTTTCGGTACGTCGCATTAACG
AGAGAAATAGAACCTGTGATCTGCGGACTGCATTTTGCGAATGGTGTACA
GTGTTTGGGGGAGGTGAAGGAGGTGGGGGAGAAGGGCTGGTTGCCTCATT
TCGTGCTGGTAGTGGAGAGCACCCGTTTCAGGATCTTGAAGGTTGATATG
TGGGCGTGGGCGGAGGAGGCGGGGAAGGAAGGCAGGGAGGATGCATTAAG
GAATTACTGTGATGAGGGTTGTGGGTTTCCACCGTTTGTCAGTGTCTTTG
CGGAGGGCTTGCCAGGTTTGCCTGACAACATCAGGTTACACCGCCAGGTG
GAGGGAGGGAGGGAGGGAGGGCTTGTGGGAATGGGAGTGGAGGAGAACGT
GTTGCTCTTGGGGATGGGCGCCAAGAACGCCCGGCCCTTTGCCCTCCTTC
AGTTCCTTTACCAGCGACCGTGGCTCCGACTGGTCCTCGGAGCGCTAGTC
CCGTTGAAGTACTTCCATACCTTCATGCCCAAGTACGGTCTCGGGGGGAT
CCTCTCACTCGAGGGCTCAGTGTTACGCGTATTGCAGGACCCCTCGGGAC
GAACCCCCTTCGTGTCTGAGTTACACATTCATCCACGCACGGGTGATTTG
TTGTTGGGCTCGTTCAGGAATCGGTTTTTGAGCAAGGTGACCTTGTCGGC
GTTGGAGCATTGA
back to top

protein sequence of NO15G00850.1

>NO15G00850.1-protein ID=NO15G00850.1-protein|Name=NO15G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MPPRTRSQTRGSSDITGTSAKSRAKGINGEEEGVEEEGLGLCPLVTPFYV
LLAIAVAVGSGITHKILQGPFHPVTWQNPPELVVLYVNHDLEGAEHLFLN
QVVGPESIAMGSNDELYLSLNDGRVVRTDSLYRHKTTVFFTGGVIKAERG
GKGKEGGTLPNGESEKELMAWCSAEMDAMRFSESTEGKCGRPLGLRFINE
SNILYIADAYHGIFTLDAATLHVQHLVAPSAPSFLPPSSIPLHPGVQLPL
RFSNDLDIVPGTGGDFFFSDSTWGWSRAEHAVDILDGAPRGRLFRYVALT
REIEPVICGLHFANGVQCLGEVKEVGEKGWLPHFVLVVESTRFRILKVDM
WAWAEEAGKEGREDALRNYCDEGCGFPPFVSVFAEGLPGLPDNIRLHRQV
EGGREGGLVGMGVEENVLLLGMGAKNARPFALLQFLYQRPWLRLVLGALV
PLKYFHTFMPKYGLGGILSLEGSVLRVLQDPSGRTPFVSELHIHPRTGDL
LLGSFRNRFLSKVTLSALEH*
back to top

mRNA from alignment at chr15:260949..262511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00850.1 ID=NO15G00850.1|Name=NO15G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at chr15:260949..262511- (Nannochloropsis oceanica)
ATGCCACCACGCACACGATCACAGACTAGAGGGAGCAGCGATATCACTGG
CACCTCCGCCAAAAGCAGAGCAAAGGGCATCAACGGGGAGGAAGAAGGCG
TGGAAGAGGAAGGCCTTGGACTCTGTCCCTTGGTGACACCCTTTTATGTC
CTTCTAGCAATCGCGGTAGCCGTAGGCTCGGGCATCACCCACAAAATCCT
ACAGGGCCCTTTTCATCCTGTAACATGGCAAAATCCGCCTGAGCTGGTGG
TATTGTATGTAAATCATGACTTGGAAGGGGCAGAGCACCTCTTTCTCAAT
CAGGTGGTGGGACCCGAGAGTATCGCTATGGGCAGCAACGACGAGCTTTA
CTTGAGCTTGAATGACGGCCGGGTAGTGCGCACGGACAGTTTGTACAGGC
ATAAGACCACTGTTTTTTTCACTGGTGGGGTCATCAAGGCTGAGCGAGGG
GGAAAGGGGAAAGAAGGAGGGACTTTGCCAAATGGGGAAAGCGAGAAGGA
GCTCATGGCCTGGTGCAGCGCCGAGATGGACGCCATGCGTTTTTCTGAAT
CCACCGAAGGCAAATGCGGCCGTCCCCTGGGGTTGCGCTTTATTAATGAG
TCCAATATTCTATACATCGCCGATGCCTACCACGGCATCTTCACCCTCGA
CGCCGCCACCCTCCACGTCCAGCACCTTGTCGCGCCCTCCGCGCCTTCCT
TCCTCCCTCCCTCCTCCATCCCTCTGCACCCAGGGGTTCAGCTGCCCCTC
CGTTTCTCTAACGACTTGGACATTGTCCCTGGCACGGGCGGAGACTTCTT
TTTCTCGGATTCGACCTGGGGCTGGTCCCGAGCGGAACATGCTGTCGATA
TCCTGGACGGAGCGCCTCGTGGGCGATTGTTTCGGTACGTCGCATTAACG
AGAGAAATAGAACCTGTGATCTGCGGACTGCATTTTGCGAATGGTGTACA
GTGTTTGGGGGAGGTGAAGGAGGTGGGGGAGAAGGGCTGGTTGCCTCATT
TCGTGCTGGTAGTGGAGAGCACCCGTTTCAGGATCTTGAAGGTTGATATG
TGGGCGTGGGCGGAGGAGGCGGGGAAGGAAGGCAGGGAGGATGCATTAAG
GAATTACTGTGATGAGGGTTGTGGGTTTCCACCGTTTGTCAGTGTCTTTG
CGGAGGGCTTGCCAGGTTTGCCTGACAACATCAGGTTACACCGCCAGGTG
GAGGGAGGGAGGGAGGGAGGGCTTGTGGGAATGGGAGTGGAGGAGAACGT
GTTGCTCTTGGGGATGGGCGCCAAGAACGCCCGGCCCTTTGCCCTCCTTC
AGTTCCTTTACCAGCGACCGTGGCTCCGACTGGTCCTCGGAGCGCTAGTC
CCGTTGAAGTACTTCCATACCTTCATGCCCAAGTACGGTCTCGGGGGGAT
CCTCTCACTCGAGGGCTCAGTGTTACGCGTATTGCAGGACCCCTCGGGAC
GAACCCCCTTCGTGTCTGAGTTACACATTCATCCACGCACGGGTGATTTG
TTGTTGGGCTCGTTCAGGAATCGGTTTTTGAGCAAGGTGACCTTGTCGGC
GTTGGAGCATTGA
back to top

Coding sequence (CDS) from alignment at chr15:260949..262511-

>NO15G00850.1 ID=NO15G00850.1|Name=NO15G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr15:260949..262511- (Nannochloropsis oceanica)
ATGCCACCACGCACACGATCACAGACTAGAGGGAGCAGCGATATCACTGG
CACCTCCGCCAAAAGCAGAGCAAAGGGCATCAACGGGGAGGAAGAAGGCG
TGGAAGAGGAAGGCCTTGGACTCTGTCCCTTGGTGACACCCTTTTATGTC
CTTCTAGCAATCGCGGTAGCCGTAGGCTCGGGCATCACCCACAAAATCCT
ACAGGGCCCTTTTCATCCTGTAACATGGCAAAATCCGCCTGAGCTGGTGG
TATTGTATGTAAATCATGACTTGGAAGGGGCAGAGCACCTCTTTCTCAAT
CAGGTGGTGGGACCCGAGAGTATCGCTATGGGCAGCAACGACGAGCTTTA
CTTGAGCTTGAATGACGGCCGGGTAGTGCGCACGGACAGTTTGTACAGGC
ATAAGACCACTGTTTTTTTCACTGGTGGGGTCATCAAGGCTGAGCGAGGG
GGAAAGGGGAAAGAAGGAGGGACTTTGCCAAATGGGGAAAGCGAGAAGGA
GCTCATGGCCTGGTGCAGCGCCGAGATGGACGCCATGCGTTTTTCTGAAT
CCACCGAAGGCAAATGCGGCCGTCCCCTGGGGTTGCGCTTTATTAATGAG
TCCAATATTCTATACATCGCCGATGCCTACCACGGCATCTTCACCCTCGA
CGCCGCCACCCTCCACGTCCAGCACCTTGTCGCGCCCTCCGCGCCTTCCT
TCCTCCCTCCCTCCTCCATCCCTCTGCACCCAGGGGTTCAGCTGCCCCTC
CGTTTCTCTAACGACTTGGACATTGTCCCTGGCACGGGCGGAGACTTCTT
TTTCTCGGATTCGACCTGGGGCTGGTCCCGAGCGGAACATGCTGTCGATA
TCCTGGACGGAGCGCCTCGTGGGCGATTGTTTCGGTACGTCGCATTAACG
AGAGAAATAGAACCTGTGATCTGCGGACTGCATTTTGCGAATGGTGTACA
GTGTTTGGGGGAGGTGAAGGAGGTGGGGGAGAAGGGCTGGTTGCCTCATT
TCGTGCTGGTAGTGGAGAGCACCCGTTTCAGGATCTTGAAGGTTGATATG
TGGGCGTGGGCGGAGGAGGCGGGGAAGGAAGGCAGGGAGGATGCATTAAG
GAATTACTGTGATGAGGGTTGTGGGTTTCCACCGTTTGTCAGTGTCTTTG
CGGAGGGCTTGCCAGGTTTGCCTGACAACATCAGGTTACACCGCCAGGTG
GAGGGAGGGAGGGAGGGAGGGCTTGTGGGAATGGGAGTGGAGGAGAACGT
GTTGCTCTTGGGGATGGGCGCCAAGAACGCCCGGCCCTTTGCCCTCCTTC
AGTTCCTTTACCAGCGACCGTGGCTCCGACTGGTCCTCGGAGCGCTAGTC
CCGTTGAAGTACTTCCATACCTTCATGCCCAAGTACGGTCTCGGGGGGAT
CCTCTCACTCGAGGGCTCAGTGTTACGCGTATTGCAGGACCCCTCGGGAC
GAACCCCCTTCGTGTCTGAGTTACACATTCATCCACGCACGGGTGATTTG
TTGTTGGGCTCGTTCAGGAATCGGTTTTTGAGCAAGGTGACCTTGTCGGC
GTTGGAGCATTGA
back to top
Synonyms
Publications