NO15G00810.1, NO15G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00810.1
Unique NameNO15G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2095
Alignment locationchr15:251593..254269 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:251593..254269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00810.1 vs.
Match: XP_005759977.1 (triose-phosphate isomerase [Emiliania huxleyi CCMP1516]; XP_005776912.1 hypothetical protein EMIHUDRAFT_74095 [Emiliania huxleyi CCMP1516]; EOD07548.1 triose-phosphate isomerase [Emiliania huxleyi CCMP1516]; EOD24483.1 hypothetical protein EMIHUDRAFT_74095 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 300.8 bits (769), Expect = 5.000e-78
Identity = 154/250 (61.60%), Postives = 184/250 (73.60%), Query Frame = 0 
Query:   71 ARRPFIAGNWKENPDTLEAALDLAKAVAAASTSASNVDVAVVVPFPFLVPVKDALKGSNVFLGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKLHKVLGAGLKAILCIGETKDEYELGVNKLICGLQLAKGLKGVTKEQMDNVAIAYEPVWAIGTGLTATPEIAQDVHANIRKILSEAYGKDVSDKVVIQYGGSVTPETVDELMAMPDIDGALVGGASLVGEKFARIINH 321
            AR P +AGNWK N D L+ A+ LAKAV+A +  AS VDVAV VP PFL+PVK+AL G  V LGAQD + ED GA+TGA S  MIKSVG+ +VL GHSERRA+FGD+D  VN K+ K+L  GLKAILCIGE K+E E G    +C  QL++GL GV    M ++ IAYEPVWAIGTGLTATPE+AQ+ HA IR    E Y ++V+D VVIQYGGSV    VD+LMA  DIDGALVGGASL  + F RI+N+
Sbjct:    2 ARTPLMAGNWKMNTD-LDEAVALAKAVSAEADKASGVDVAVCVPSPFLIPVKEALAGGKVGLGAQDCHWEDAGAFTGAISTSMIKSVGSDYVLAGHSERRAVFGDSDADVNKKVLKILAGGLKAILCIGELKEERESGETFNVCATQLSEGLAGVDAAMMKDIVIAYEPVWAIGTGLTATPEVAQETHAYIRSWFVENYSQEVADAVVIQYGGSVNDNNVDDLMACADIDGALVGGASLKADSFGRIVNY 250
The following BLAST results are available for this feature:
BLAST of NO15G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005759977.15.000e-7861.60triose-phosphate isomerase [Emiliania huxleyi CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00810NO15G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00810.1NO15G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00810.1.cds1NO15G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00810.1.cds2NO15G00810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00810.1.cds3NO15G00810.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00810.1.cds4NO15G00810.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00810.1 ID=NO15G00810.1|Name=NO15G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2095bp
CGGCTCCTCCTCAGCACATCCGCCTCCGCCCCTCCCGGCGGCGATGCATC
TGCAACAAGAATGAGCGGGCAGAGGTGCAAGTGGATAAAGTGACGTGCTA
AAAAGGCCTAAGGCGCCTATGCTTAAATCTTCTTTTTTGGCCGGTTGGCG
TGGACATTAATGCCCGCCGCCCAGTGATGACTGGTTGGTGATGTTTTCAC
CTCACACTTGATGCCGAGTCAGGTCTTGTGCAGTCATCCACCACCTCTCC
ATTCTTGCACTGAGCGATGCGAGCCAGCTAATTGTGGCTCTGAATGTTCT
CCCTCGTACATGCAAGGCACTTTTCTGCGTGTCAGTATGCGGCGTGGTTT
TGGCAGGAGTGATTGACATGCCGGAGAGTATCCTTGGTCACGCGCACCGC
TACTCCCTCTCCCCTCGCACACGATCCCACAGCAGGATGATGAGGACTTT
CTGCCTTCTTGCGGTGGCCATGCTGGCCGCGCCCGCATCCGCCTTCATCC
CTCAGACCTCCTTCCGCTCCAGCAGCCCCGTCGTCAGCAGATCCGCGAGT
CGTCGTACTGCCCCCTCCATGATGGCCGCACGCCGTCCGTTCATCGCAGG
CAACTGGAAGGAGAACCCCGATACCCTCGAGGCAGCCCTGGACCTGGCCA
AGGCGGTCGCAGCTGCCTCAACTAGCGCCTCCAACGTGGACGTTGCCGTC
GTCGTGCCCTTTCCCTTTCTTGTTCCTGTCAAGGATGCCCTCAAAGGAAG
CAACGTTTTCCTCGGCGCGCAAGACTTGTATACGGAGGATAAAGGTGCCT
ACACGGGCGCGACCTCTCTTCCGATGATCAAGTCAGTGGGGGCGCAGTGG
GTGCTGTGTGGCCACTCGGAGCGACGGGCCTTGTTCGGAGATACCGACGA
GACGGTGAATGCCAAGCTGCACAAAGTGTTGGGCGCGGGGTTAAAGGCTA
TCCTCTGCATTGGCGAGACCAAGGACGAGTACGAGCTGGGCGTGAACAAG
CTCATCTGCGGCCTGCAACTCGCCAAGGGCCTTAAGGGCGTCACCAAGGA
ACAAATGGACAACGTGGCCATTGCCTACGAGCCGGTATGGGCCATCGGCA
CGGGCCTAACCGCCACCCCCGAGATCGCCCAAGACGTGCATGCGAACATC
CGGAAGATCCTGTCCGAGGCCTACGGGAAGGACGTGAGCGACAAGGTGGT
GATCCAGTACGGAGGGAGCGTGACGCCCGAGACGGTGGACGAGTTGATGG
CCATGCCCGACATCGACGGCGCCTTGGTGGGCGGCGCGTCCTTGGTAGGA
GAGAAATTTGCGCGAATAATCAACCACAAGTGAATGATATAAGGAGTAGA
GACGGTGCGGGTGCATGTCTGCAGTCGGACTCGGGGCGGGAAGAGAGTCG
GGCGGGGGTGAGAGGGTTGGAATGAAGGAGACAGAGAAGAAGATATCCAC
ACTGCGGAGCTGTAAGCGTAGGACGTGGAAGGATTGAGGAAAGGAATGTG
GAAGGGAGGCAGGAAGTGAGTGGAATGGAGTGAAAGGAAAAAGGGCAAAT
AAATGTGTTCGTATGGGTCATGTCAATTTTGATGCTGGGAGGGAGGAAGG
GGAGGAGGGAGGGAAGAAGAGAGGGTGGGAGGACGAAGACTTGGCTAGTA
CAGTAGAAGCGGCGCGATGCTTGGACTTGAAGGAAAGACGGGAATGAAGA
GGGACGAGGAAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGG
AGGGATGGATGGATGGAGGGAGGGAGGGAGGAATGGAGGGAGGGAGTGGC
ATACTCTTTGCCTGGATGGTTGGGGTGTTCCTCACTCGTTTCTCTGAAAT
ATTTTTGGTTTTCGTGTTTTGGTTTTATTGTGCATGTTCGTGTCTGTGTG
GTGATAGGGAGAAGAGGAACCCCACACAACAATAATGATTAGAGCAACCA
ATCGCAGAGTACGGGGAAGCGAGGGAGAGAAGGCAATGTGGTTGGGGGAG
AGGGAGGCAAGACAGCTCAACCAAAGACTGATGAAAGAGCAGAATTGGAA
TTTCGAATGAACGGCGTCGGGAGTAGAATGATCGCAACTTCAAGC
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protein sequence of NO15G00810.1

>NO15G00810.1-protein ID=NO15G00810.1-protein|Name=NO15G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPESILGHAHRYSLSPRTRSHSRMMRTFCLLAVAMLAAPASAFIPQTSFR
SSSPVVSRSASRRTAPSMMAARRPFIAGNWKENPDTLEAALDLAKAVAAA
STSASNVDVAVVVPFPFLVPVKDALKGSNVFLGAQDLYTEDKGAYTGATS
LPMIKSVGAQWVLCGHSERRALFGDTDETVNAKLHKVLGAGLKAILCIGE
TKDEYELGVNKLICGLQLAKGLKGVTKEQMDNVAIAYEPVWAIGTGLTAT
PEIAQDVHANIRKILSEAYGKDVSDKVVIQYGGSVTPETVDELMAMPDID
GALVGGASLVGEKFARIINHK*
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mRNA from alignment at chr15:251593..254269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00810.1 ID=NO15G00810.1|Name=NO15G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2677bp|location=Sequence derived from alignment at chr15:251593..254269+ (Nannochloropsis oceanica)
CGGCTCCTCCTCAGCACATCCGCCTCCGCCCCTCCCGGCGGCGATGCATC
TGCAACAAGAATGAGCGGGCAGAGGTGCAAGTGGATAAAGTGACGTGCTA
AAAAGGCCTAAGGCGCCTATGCTTAAATCTTCTTTTTTGGCCGGTTGGCG
TGGACATTAATGCCCGCCGCCCAGTGATGACTGGTTGGTGATGTTTTCAC
CTCACACTTGATGCCGAGTCAGGTCTTGTGCAGTCATCCACCACCTCTCC
ATTCTTGCACTGAGCGATGCGAGCCAGCTAATTGTGGCTCTGAATGTTCT
CCCTCGTACATGCAAGGCACTTTTCTGCGTGTCAGTATGCGGCGTGGTTT
TGGCAGGAGTGATTGACATGCCGGAGAGTATCCTTGGTCACGCGCACCGC
TACTCCCTCTCCCCTCGCACACGATCCCACAGCAGGATGATGAGGACTTT
CTGCCTTCTTGCGGTGGCCATGCTGGCCGCGCCCGCATCCGCCTTCATCC
CTCAGACCTCCTTCCGCTCCAGCAGCCCCGTCGTCAGCAGATCCGCGAGT
CGTCGTACTGCCCCCTCCATGATGGCCGCACGCCGTCCGTTCATCGCAGG
CAACTGGAAGGAGAACCCCGATACCCTCGAGGCAGCCCTGGACCTGGCCA
AGGCGGTACGTTCGACCGTCAATGAGACAGGCAGAGTGAGGTTTTCGTGT
GTTGAGTGTGCGGATGAGAGTCTGGCTGATGTGTCGGCTGGTTGTACACT
TTCCTCAGCTCATGTTCACGAGCCGGAGTCCAGCGCATTGCCTCCCTTCA
TCACTGGTTAACTCTCTGCCCCCACGTTGAACTGTTCTCGTGTCCCTACA
ATACCATTATCATCAATATTTCATCCCGGCCGCTAATCCCTCCCTCCCTC
CCCCCCTCCCTCCCTTCCTCTTCCCTTGCTCCCTCCGTCTCCTTCCCCTC
AGGTCGCAGCTGCCTCAACTAGCGCCTCCAACGTGGACGTTGCCGTCGTC
GTGCCCTTTCCCTTTCTTGTTCCTGTCAAGGATGCCCTCAAAGGAAGCAA
CGTTTTCCTCGGCGCGCAAGACTTGTATACGGAGGATAAAGGTGCCTACA
CGGGCGCGACCTCTCTTCCGATGATCAAGTCAGTGGGGGCGCAGTGGGTG
CTGTGTGGCCACTCGGAGCGACGGGCCTTGTTCGGAGATACCGACGAGAC
GGTGAATGCCAAGCTGCACAAAGTGTTGGGCGCGGGGTTAAAGGTACGAG
GGAGGGAGGGAGGGAGGGGAGGGCCACGGGAAGGATGGAGGGGGGGAGAC
ATTCGCACAGGGCAGAGAAACTTAATATAGGCTGGTCCAGCATCCACTCA
GCTTTCCTGCTTTCTTCATTTTTCATATTTCCTCTCTCCCTCTCCTCCCC
CTGACCCGCGCAGGCTATCCTCTGCATTGGCGAGACCAAGGACGAGTACG
AGCTGGGCGTGAACAAGCTCATCTGCGGCCTGCAACTCGCCAAGGGCCTT
AAGGGCGTCACCAAGGTTCGGCTCGCCCTCCCACCCCCCCTTTCCTCCCT
CCCACAAAGAGGAAATCCTGTGCTCCATTTGATAAGAACCGACCCTCCCT
CCCTCCCTCCTGCATTCCCTTTCCCAACAGGAACAAATGGACAACGTGGC
CATTGCCTACGAGCCGGTATGGGCCATCGGCACGGGCCTAACCGCCACCC
CCGAGATCGCCCAAGACGTGCATGCGAACATCCGGAAGATCCTGTCCGAG
GCCTACGGGAAGGACGTGAGCGACAAGGTGGTGATCCAGTACGGAGGGAG
CGTGACGCCCGAGACGGTGGACGAGTTGATGGCCATGCCCGACATCGACG
GCGCCTTGGTGGGCGGCGCGTCCTTGGTAGGAGAGAAATTTGCGCGAATA
ATCAACCACAAGTGAATGATATAAGGAGTAGAGACGGTGCGGGTGCATGT
CTGCAGTCGGACTCGGGGCGGGAAGAGAGTCGGGCGGGGGTGAGAGGGTT
GGAATGAAGGAGACAGAGAAGAAGATATCCACACTGCGGAGCTGTAAGCG
TAGGACGTGGAAGGATTGAGGAAAGGAATGTGGAAGGGAGGCAGGAAGTG
AGTGGAATGGAGTGAAAGGAAAAAGGGCAAATAAATGTGTTCGTATGGGT
CATGTCAATTTTGATGCTGGGAGGGAGGAAGGGGAGGAGGGAGGGAAGAA
GAGAGGGTGGGAGGACGAAGACTTGGCTAGTACAGTAGAAGCGGCGCGAT
GCTTGGACTTGAAGGAAAGACGGGAATGAAGAGGGACGAGGAAGGGAGGA
AGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGGATGGATGGATGGAG
GGAGGGAGGGAGGAATGGAGGGAGGGAGTGGCATACTCTTTGCCTGGATG
GTTGGGGTGTTCCTCACTCGTTTCTCTGAAATATTTTTGGTTTTCGTGTT
TTGGTTTTATTGTGCATGTTCGTGTCTGTGTGGTGATAGGGAGAAGAGGA
ACCCCACACAACAATAATGATTAGAGCAACCAATCGCAGAGTACGGGGAA
GCGAGGGAGAGAAGGCAATGTGGTTGGGGGAGAGGGAGGCAAGACAGCTC
AACCAAAGACTGATGAAAGAGCAGAATTGGAATTTCGAATGAACGGCGTC
GGGAGTAGAATGATCGCAACTTCAAGC
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Coding sequence (CDS) from alignment at chr15:251593..254269+

>NO15G00810.1 ID=NO15G00810.1|Name=NO15G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr15:251593..254269+ (Nannochloropsis oceanica)
ATGCCGGAGAGTATCCTTGGTCACGCGCACCGCTACTCCCTCTCCCCTCG
CACACGATCCCACAGCAGGATGATGAGGACTTTCTGCCTTCTTGCGGTGG
CCATGCTGGCCGCGCCCGCATCCGCCTTCATCCCTCAGACCTCCTTCCGC
TCCAGCAGCCCCGTCGTCAGCAGATCCGCGAGTCGTCGTACTGCCCCCTC
CATGATGGCCGCACGCCGTCCGTTCATCGCAGGCAACTGGAAGGAGAACC
CCGATACCCTCGAGGCAGCCCTGGACCTGGCCAAGGCGGTCGCAGCTGCC
TCAACTAGCGCCTCCAACGTGGACGTTGCCGTCGTCGTGCCCTTTCCCTT
TCTTGTTCCTGTCAAGGATGCCCTCAAAGGAAGCAACGTTTTCCTCGGCG
CGCAAGACTTGTATACGGAGGATAAAGGTGCCTACACGGGCGCGACCTCT
CTTCCGATGATCAAGTCAGTGGGGGCGCAGTGGGTGCTGTGTGGCCACTC
GGAGCGACGGGCCTTGTTCGGAGATACCGACGAGACGGTGAATGCCAAGC
TGCACAAAGTGTTGGGCGCGGGGTTAAAGGCTATCCTCTGCATTGGCGAG
ACCAAGGACGAGTACGAGCTGGGCGTGAACAAGCTCATCTGCGGCCTGCA
ACTCGCCAAGGGCCTTAAGGGCGTCACCAAGGAACAAATGGACAACGTGG
CCATTGCCTACGAGCCGGTATGGGCCATCGGCACGGGCCTAACCGCCACC
CCCGAGATCGCCCAAGACGTGCATGCGAACATCCGGAAGATCCTGTCCGA
GGCCTACGGGAAGGACGTGAGCGACAAGGTGGTGATCCAGTACGGAGGGA
GCGTGACGCCCGAGACGGTGGACGAGTTGATGGCCATGCCCGACATCGAC
GGCGCCTTGGTGGGCGGCGCGTCCTTGGTAGGAGAGAAATTTGCGCGAAT
AATCAACCACAAGTGA
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Synonyms
Publications