NO15G00790.1, NO15G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00790.1
Unique NameNO15G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr15:247485..248663 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:247485..248663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00790.1 vs.
Match: EWM22501.1 (bestrophin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 394.4 bits (1012), Expect = 4.000e-106
Identity = 202/339 (59.59%), Postives = 250/339 (73.75%), Query Frame = 0 
Query:   50 PQPTSGRSTLFSSLSA-IPAP---------DHPPPPPPKRKESAVHFAHWLTTQAFLMTEIRPVLFLNMVFTALVAHAYKRGMTGAVDIHPHSLLAGPLGFFLTFRAEKGFDRCEDARKIWDGVLDTSRDMARCAIGAESLLGSSGPPFPARRLMDLTCAYGILLEEFVTRKQRQLELEALLGKRDLEILRLGAANRPLAMTELISEEVVDEAKTSAVFRNSPYFGRLLEHIDQLSHHVTQVQRLMKPSVPPFFYTHALRFLTLYVFTLPFALVDKLPGHALVPAVGILTWALFGLRELGIKAQYPFSSGVVNLKTLWKEVIYDARVCLEETHQKAEKE 379
            P+   G S L+S+ SA + AP         + P P PPKRKESA HFA+W TT AFLM EIRPV FL+MVF+A+VA AYK G+ GA+D+ PHSLLAGPLGF LTFRA++GFDRC+ AR+ WD VLDTSRDMARC  GA+ LL      FPA RL+ L  AYGILLEEFVTR  R+ EL+ LL ++DL +L     +RP+A+ E++++EV   A+    FR SPYF RLL  IDQL HH T +  L K  VPP FYTHALRFLTLYVFTLP ALVDK+PG ALVP +G++TW LFGLRELGIKAQYPFS+G+VN+KT+W+EV+++    L++  QK +K+
Sbjct:   54 PRMPKGMSCLYSTSSASLQAPTLNSDKSSEEAPLPAPPKRKESAEHFAYWFTTYAFLMPEIRPVTFLSMVFSAVVALAYKHGVIGALDLQPHSLLAGPLGFLLTFRAQQGFDRCQGARRTWDTVLDTSRDMARCVGGADILLSDDKYSFPAGRLIALIQAYGILLEEFVTRIPREDELKELLSEQDLLVLEARRTHRPVALIEIMAQEVARIARAQTTFRESPYFSRLLNCIDQLGHHTTLIHSLTKTPVPPIFYTHALRFLTLYVFTLPLALVDKIPGGALVPVIGLMTWILFGLRELGIKAQYPFSTGLVNVKTVWEEVVFNTPDLLKDAVQKVKKQ 392
The following BLAST results are available for this feature:
BLAST of NO15G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22501.14.000e-10659.59bestrophin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00790NO15G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00790.1NO15G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00790.1.cds1NO15G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00790.1 ID=NO15G00790.1|Name=NO15G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
ATGCGGAGCCTTGTTGCTGGCCAAGTCCTGCTGCTCCTCGCTGCCGCCGG
ATTTACGCATATTCACGCCTTTCAGGCGCCCCCATCCCGTTGCATCATGG
CTCTCCAGTTTTCTTTTCTGATCCGGCAACGTGGAAAGGTCCGCTCTCCA
CAGCCCACTTCAGGACGCTCCACCCTCTTTTCGAGCCTCTCCGCCATTCC
TGCCCCCGACCATCCCCCGCCCCCGCCACCCAAGCGCAAAGAAAGTGCCG
TGCACTTTGCTCATTGGTTAACTACACAGGCCTTTTTGATGACGGAAATT
CGACCAGTATTGTTCTTAAATATGGTGTTCACAGCCCTAGTTGCCCACGC
GTACAAACGTGGCATGACGGGCGCTGTGGACATTCACCCGCACTCGTTGC
TGGCGGGCCCTCTTGGTTTCTTCCTCACTTTTCGAGCTGAAAAGGGTTTT
GATCGCTGTGAAGACGCACGAAAGATCTGGGATGGAGTGCTGGATACGTC
CCGCGATATGGCACGATGCGCTATTGGGGCCGAGTCCTTGCTGGGCAGTA
GCGGTCCCCCTTTTCCCGCGCGGCGTCTGATGGACCTGACTTGTGCGTAC
GGCATTTTGCTAGAGGAGTTTGTGACGCGAAAGCAGCGGCAGTTAGAGCT
GGAAGCGCTGCTAGGAAAGCGGGATTTGGAGATTCTTCGGCTCGGAGCCG
CCAATCGGCCCCTAGCTATGACGGAGTTGATCTCGGAGGAAGTTGTAGAT
GAGGCCAAAACATCCGCAGTCTTTCGCAATTCTCCATATTTTGGTCGCCT
GTTGGAGCACATTGATCAATTGAGCCATCACGTAACCCAGGTCCAGCGTC
TGATGAAGCCCTCTGTGCCCCCATTTTTCTACACGCATGCGCTTCGTTTC
CTGACCCTTTATGTTTTCACACTCCCCTTTGCCCTGGTTGATAAACTGCC
AGGACACGCGTTGGTGCCGGCTGTTGGGATCCTGACATGGGCATTATTCG
GACTGAGGGAGTTGGGCATTAAGGCGCAGTATCCATTTTCATCGGGCGTG
GTCAATCTCAAGACCTTGTGGAAGGAAGTCATTTACGATGCACGTGTGTG
CCTGGAAGAGACGCACCAGAAGGCGGAAAAGGAGAGAGCCAAGGACGAAA
GCGCGGAAGGGATGGAAAAGGGGCAGTGA
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protein sequence of NO15G00790.1

>NO15G00790.1-protein ID=NO15G00790.1-protein|Name=NO15G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MRSLVAGQVLLLLAAAGFTHIHAFQAPPSRCIMALQFSFLIRQRGKVRSP
QPTSGRSTLFSSLSAIPAPDHPPPPPPKRKESAVHFAHWLTTQAFLMTEI
RPVLFLNMVFTALVAHAYKRGMTGAVDIHPHSLLAGPLGFFLTFRAEKGF
DRCEDARKIWDGVLDTSRDMARCAIGAESLLGSSGPPFPARRLMDLTCAY
GILLEEFVTRKQRQLELEALLGKRDLEILRLGAANRPLAMTELISEEVVD
EAKTSAVFRNSPYFGRLLEHIDQLSHHVTQVQRLMKPSVPPFFYTHALRF
LTLYVFTLPFALVDKLPGHALVPAVGILTWALFGLRELGIKAQYPFSSGV
VNLKTLWKEVIYDARVCLEETHQKAEKERAKDESAEGMEKGQ*
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mRNA from alignment at chr15:247485..248663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00790.1 ID=NO15G00790.1|Name=NO15G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at chr15:247485..248663+ (Nannochloropsis oceanica)
ATGCGGAGCCTTGTTGCTGGCCAAGTCCTGCTGCTCCTCGCTGCCGCCGG
ATTTACGCATATTCACGCCTTTCAGGCGCCCCCATCCCGTTGCATCATGG
CTCTCCAGTTTTCTTTTCTGATCCGGCAACGTGGAAAGGTCCGCTCTCCA
CAGCCCACTTCAGGACGCTCCACCCTCTTTTCGAGCCTCTCCGCCATTCC
TGCCCCCGACCATCCCCCGCCCCCGCCACCCAAGCGCAAAGAAAGTGCCG
TGCACTTTGCTCATTGGTTAACTACACAGGCCTTTTTGATGACGGAAATT
CGACCAGTATTGTTCTTAAATATGGTGTTCACAGCCCTAGTTGCCCACGC
GTACAAACGTGGCATGACGGGCGCTGTGGACATTCACCCGCACTCGTTGC
TGGCGGGCCCTCTTGGTTTCTTCCTCACTTTTCGAGCTGAAAAGGGTTTT
GATCGCTGTGAAGACGCACGAAAGATCTGGGATGGAGTGCTGGATACGTC
CCGCGATATGGCACGATGCGCTATTGGGGCCGAGTCCTTGCTGGGCAGTA
GCGGTCCCCCTTTTCCCGCGCGGCGTCTGATGGACCTGACTTGTGCGTAC
GGCATTTTGCTAGAGGAGTTTGTGACGCGAAAGCAGCGGCAGTTAGAGCT
GGAAGCGCTGCTAGGAAAGCGGGATTTGGAGATTCTTCGGCTCGGAGCCG
CCAATCGGCCCCTAGCTATGACGGAGTTGATCTCGGAGGAAGTTGTAGAT
GAGGCCAAAACATCCGCAGTCTTTCGCAATTCTCCATATTTTGGTCGCCT
GTTGGAGCACATTGATCAATTGAGCCATCACGTAACCCAGGTCCAGCGTC
TGATGAAGCCCTCTGTGCCCCCATTTTTCTACACGCATGCGCTTCGTTTC
CTGACCCTTTATGTTTTCACACTCCCCTTTGCCCTGGTTGATAAACTGCC
AGGACACGCGTTGGTGCCGGCTGTTGGGATCCTGACATGGGCATTATTCG
GACTGAGGGAGTTGGGCATTAAGGCGCAGTATCCATTTTCATCGGGCGTG
GTCAATCTCAAGACCTTGTGGAAGGAAGTCATTTACGATGCACGTGTGTG
CCTGGAAGAGACGCACCAGAAGGCGGAAAAGGAGAGAGCCAAGGACGAAA
GCGCGGAAGGGATGGAAAAGGGGCAGTGA
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Coding sequence (CDS) from alignment at chr15:247485..248663+

>NO15G00790.1 ID=NO15G00790.1|Name=NO15G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr15:247485..248663+ (Nannochloropsis oceanica)
ATGCGGAGCCTTGTTGCTGGCCAAGTCCTGCTGCTCCTCGCTGCCGCCGG
ATTTACGCATATTCACGCCTTTCAGGCGCCCCCATCCCGTTGCATCATGG
CTCTCCAGTTTTCTTTTCTGATCCGGCAACGTGGAAAGGTCCGCTCTCCA
CAGCCCACTTCAGGACGCTCCACCCTCTTTTCGAGCCTCTCCGCCATTCC
TGCCCCCGACCATCCCCCGCCCCCGCCACCCAAGCGCAAAGAAAGTGCCG
TGCACTTTGCTCATTGGTTAACTACACAGGCCTTTTTGATGACGGAAATT
CGACCAGTATTGTTCTTAAATATGGTGTTCACAGCCCTAGTTGCCCACGC
GTACAAACGTGGCATGACGGGCGCTGTGGACATTCACCCGCACTCGTTGC
TGGCGGGCCCTCTTGGTTTCTTCCTCACTTTTCGAGCTGAAAAGGGTTTT
GATCGCTGTGAAGACGCACGAAAGATCTGGGATGGAGTGCTGGATACGTC
CCGCGATATGGCACGATGCGCTATTGGGGCCGAGTCCTTGCTGGGCAGTA
GCGGTCCCCCTTTTCCCGCGCGGCGTCTGATGGACCTGACTTGTGCGTAC
GGCATTTTGCTAGAGGAGTTTGTGACGCGAAAGCAGCGGCAGTTAGAGCT
GGAAGCGCTGCTAGGAAAGCGGGATTTGGAGATTCTTCGGCTCGGAGCCG
CCAATCGGCCCCTAGCTATGACGGAGTTGATCTCGGAGGAAGTTGTAGAT
GAGGCCAAAACATCCGCAGTCTTTCGCAATTCTCCATATTTTGGTCGCCT
GTTGGAGCACATTGATCAATTGAGCCATCACGTAACCCAGGTCCAGCGTC
TGATGAAGCCCTCTGTGCCCCCATTTTTCTACACGCATGCGCTTCGTTTC
CTGACCCTTTATGTTTTCACACTCCCCTTTGCCCTGGTTGATAAACTGCC
AGGACACGCGTTGGTGCCGGCTGTTGGGATCCTGACATGGGCATTATTCG
GACTGAGGGAGTTGGGCATTAAGGCGCAGTATCCATTTTCATCGGGCGTG
GTCAATCTCAAGACCTTGTGGAAGGAAGTCATTTACGATGCACGTGTGTG
CCTGGAAGAGACGCACCAGAAGGCGGAAAAGGAGAGAGCCAAGGACGAAA
GCGCGGAAGGGATGGAAAAGGGGCAGTGA
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Synonyms
Publications