NO15G00770.2, NO15G00770.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00770.2
Unique NameNO15G00770.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1506
Alignment locationchr15:242786..244947 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:242786..244947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G00770.2 vs.
Match: ELT91505.1 (hypothetical protein CAPTEDRAFT_195329 [Capitella teleta])

HSP 1 Score: 188.0 bits (476), Expect = 7.300e-44
Identity = 126/349 (36.10%), Postives = 194/349 (55.59%), Query Frame = 0 
Query:  148 GLCVVFRPQEHLSPSILAATANSLQGGGLLVLVLPEVEAWEELHSTAAAAARGGEEKGKRHQQEQLQRRRQEQQQQRQAASRSLLLDRLLIRLPSCKSALFLLPSLHPLPYSPALL----LPSSPPPPPKTEDGLDLLSLQSSLASSPIAGPLLSLALTLDQGRALLTFLDAASEKEMGGTVVMRGGRGRGKTCALGLGLAGAIAFGFSNVFLTAETPRKAQGIFRFVLKGFDVMGWKEKEEYEVVVQERQQPEGRREGGTDEIRPSAAGSGWGREEGKGGGMTAILRINVFREHRQTVQYIYPDDGARLEQAEVLAIDDAASLSPSLVGNLLGPYLTFVAIQEGGREG 493
            G+CV+ +  E +SP++LA T  +++GGGL+VL+L  V++  +L++                  +   R R E  Q           +R ++ L SCK+ + +   L+PLP S   L    LP  P   P++ +  +L +L+ SL  +   G L++   TLDQ +A+L F++A SEK +  TV M   RGRGK+ ALGL LA A+AFG+SN+F+T+ +P   + +F F+ KGFD + ++E  +YE+V  +   PE  +                           AI+R+N+FREHRQT+QYI+P D A+L QAE++ ID+AA++   LV  LLGPYL F++    G EG
Sbjct:  118 GMCVL-QDFEAMSPNLLARTVETVEGGGLIVLLLHSVDSLRQLYTMT---------------MDVHSRYRTESHQDIVGRFN----ERFILSLASCKTCMVIDDQLNPLPLSSHTLSITALPPKPIDAPQSPEEEELGNLKESLQDTQPVGVLVNCCKTLDQAKAVLRFIEAISEKTLRSTVTMTAARGRGKSAALGLALASAVAFGYSNIFVTSPSPENLKTLFEFIFKGFDALEYQEHLDYELV--QSTNPEFNK---------------------------AIIRVNIFREHRQTIQYIHPADAAKLGQAELVCIDEAAAIPLPLVKALLGPYLVFMSSTINGYEG 417
The following BLAST results are available for this feature:
BLAST of NO15G00770.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ELT91505.17.300e-4436.10hypothetical protein CAPTEDRAFT_195329 [Capitella ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00770NO15G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00770.2NO15G00770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00770.2.cds1NO15G00770.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00770.2.cds2NO15G00770.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00770.2.cds3NO15G00770.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00770.2 ID=NO15G00770.2|Name=NO15G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
AGAATGCGTGGCGCCAGCAAGGTCAAGAAAAAGAAAGCTCCTGCATCTCC
AGCGTCTACCTCCCCACCTGTCACAGCAGCTCCCGGACTTACCTCCTCAG
ACGCAAACTCCTCCAAAAAACGCCCCCGCCATATGGAAAACAACACTACA
CCCATCATCTGTCCCCCACCTGTGATCCAAGTTTTCGCTAAGTTGGTCAA
GACGGGCCATCGTGGTGTGTGCGTCCTGCTCTCGTCGCGGCCTGATGCGG
AAATATCTACAATCTCTACAGCTCTCCTGGCGCTTGTCCAAGGGTGGAAA
AGCGTGGGTGGAAAGGGAAAGGGCGTCATGGTTGTGGCGGACACGGACAA
GGCAACCGCGGGTCCTTTAACGGGCCAGCTGAGGCCCCTCGCATTCACCG
ACCTCTCCTCCTTCCCCCTCTCCTCCTCTATCCCCGCCAAATTGGGCCTG
TGTGTGGTGTTTCGCCCTCAAGAGCACCTCTCCCCCTCCATCCTTGCTGC
TACAGCCAACAGTCTCCAGGGCGGAGGGCTCCTAGTCCTCGTCCTTCCCG
AAGTGGAAGCCTGGGAGGAACTCCATTCAACAGCAGCAGCAGCAGCAAGA
GGAGGAGAAGAAAAAGGAAAGCGCCACCAGCAGGAGCAACTGCAACGACG
AAGACAAGAACAACAGCAGCAACGACAAGCCGCATCCCGATCCCTCCTCC
TCGATCGCCTCCTGATCCGCCTCCCCTCCTGCAAGTCCGCCCTCTTCCTC
CTCCCCTCCCTCCACCCTCTTCCTTACTCCCCCGCCCTCCTCCTCCCCTC
CTCCCCTCCTCCCCCCCCAAAAACTGAGGATGGCCTAGACCTCCTCTCCC
TCCAGTCCTCCCTTGCTTCCTCCCCTATCGCGGGGCCCCTCCTCTCCCTC
GCCCTCACCCTCGACCAAGGCCGAGCCCTCCTCACGTTCCTGGACGCTGC
ATCTGAAAAAGAGATGGGAGGAACAGTGGTCATGAGGGGGGGAAGGGGCC
GAGGGAAGACGTGTGCGTTGGGTTTGGGATTGGCTGGGGCCATCGCCTTC
GGATTTTCGAATGTGTTTTTAACGGCCGAGACTCCCCGGAAGGCCCAAGG
GATCTTCAGGTTTGTGTTGAAGGGCTTTGATGTGATGGGATGGAAGGAGA
AGGAGGAGTATGAGGTGGTGGTGCAAGAGCGGCAGCAACCAGAGGGAAGG
AGAGAGGGAGGGACCGATGAAATTCGACCGAGTGCTGCCGGGTCGGGATG
GGGGAGGGAGGAAGGGAAGGGGGGAGGGATGACAGCGATTTTGAGGATCA
ATGTGTTCAGAGAGCATCGGCAGACTGTGCAATACATATACCCGGACGAT
GGCGCGAGGTTGGAGCAGGCGGAGGTGCTGGCTATCGATGACGCTGCTTC
CCTCTCTCCCTCCCTTGTTGGGAACCTCCTTGGCCCTTACTTGACGTTTG
TGGCTATCCAGGAAGGGGGGAGGGAGGGGCGGGCCCAGCAGCGGCTAAAG
CGTTGA
back to top

protein sequence of NO15G00770.2

>NO15G00770.2-protein ID=NO15G00770.2-protein|Name=NO15G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MRGASKVKKKKAPASPASTSPPVTAAPGLTSSDANSSKKRPRHMENNTTP
IICPPPVIQVFAKLVKTGHRGVCVLLSSRPDAEISTISTALLALVQGWKS
VGGKGKGVMVVADTDKATAGPLTGQLRPLAFTDLSSFPLSSSIPAKLGLC
VVFRPQEHLSPSILAATANSLQGGGLLVLVLPEVEAWEELHSTAAAAARG
GEEKGKRHQQEQLQRRRQEQQQQRQAASRSLLLDRLLIRLPSCKSALFLL
PSLHPLPYSPALLLPSSPPPPPKTEDGLDLLSLQSSLASSPIAGPLLSLA
LTLDQGRALLTFLDAASEKEMGGTVVMRGGRGRGKTCALGLGLAGAIAFG
FSNVFLTAETPRKAQGIFRFVLKGFDVMGWKEKEEYEVVVQERQQPEGRR
EGGTDEIRPSAAGSGWGREEGKGGGMTAILRINVFREHRQTVQYIYPDDG
ARLEQAEVLAIDDAASLSPSLVGNLLGPYLTFVAIQEGGREGRAQQRLKR
*
back to top

mRNA from alignment at chr15:242786..244947+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00770.2 ID=NO15G00770.2|Name=NO15G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp|location=Sequence derived from alignment at chr15:242786..244947+ (Nannochloropsis oceanica)
AGAATGCGTGGCGCCAGCAAGGTCAAGAAAAAGAAAGCTCCTGCATCTCC
AGCGTCTACCTCCCCACCTGTCACAGCAGCTCCCGGACTTACCTCCTCAG
ACGCAAACTCCTCCAAAAAACGCCCCCGCCATATGGAAAACAACACTACA
CCCATCATCTGTCCCCCACCTGTGATCCAAGTTTTCGCTAAGTTGGTCAA
GACGGGCCATCGTGGTGTGTGCGTCCTGCTCTCGTCGCGGCCTGATGCGG
GTAAGGAGGGAGGGTGGTGGGGGAGGGGGAGGGAAATATTGGAGCGGGTG
AGGACATTAAAGCAAGAAATACATTGACACAGAAATATCTACAATCTCTA
CAGCTCTCCTGGCGCTTGTCCAAGGGTGGAAAAGCGTGGGTGGAAAGGGA
AAGGGCGTCATGGTTGTGGCGGACACGGACAAGGCAACCGCGGGTCCTTT
AACGGGCCAGCTGAGGTACGGCAGGGGGAATGTGTGAGGTTCATTGTGGG
CGTAGGCAAACCGTCTAATGTTTTTCCTATTACTTGTTCTCCTTTCAATG
CCTTGATCGTCTAGCATGCCCTCTTTTTTGTACTTGTTCCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCGTCCCTCCATCCCTCCATCCCTAAGCA
TCCCATACTGTGACCGGGCCTATACTCTTTCCCGTGGTCTGAGTTCATAT
CAGGGCATGCAAAAATAATTCTCAGGCATGGCAAAAAGCACTCAACTTGT
CTTCAAACTTAAAACCTAAAGATGGTTGGGCCGTTGCGCCAAGTACCACA
GTAATTCATTCATCGATAATGGATTGTTTAAATAAGTACTCAACTTTATG
CTGGTTCCACCCGCGTATTATCTCGCCTGGAGCTCTTGGACACTGCCCAC
AGCACACGGGCACGGGCAACGCTCCCTCTCTTTGGAGACTCATTCCCAAG
AGTGCCCAACGTGCAAATTCCTCGCCATTGTGCTCATCCTCCATCTTCCT
CCCTTCCTCCCGTCCTCCGTCGCTCAACCTCCCATGCAGGCCCCTCGCAT
TCACCGACCTCTCCTCCTTCCCCCTCTCCTCCTCTATCCCCGCCAAATTG
GGCCTGTGTGTGGTGTTTCGCCCTCAAGAGCACCTCTCCCCCTCCATCCT
TGCTGCTACAGCCAACAGTCTCCAGGGCGGAGGGCTCCTAGTCCTCGTCC
TTCCCGAAGTGGAAGCCTGGGAGGAACTCCATTCAACAGCAGCAGCAGCA
GCAAGAGGAGGAGAAGAAAAAGGAAAGCGCCACCAGCAGGAGCAACTGCA
ACGACGAAGACAAGAACAACAGCAGCAACGACAAGCCGCATCCCGATCCC
TCCTCCTCGATCGCCTCCTGATCCGCCTCCCCTCCTGCAAGTCCGCCCTC
TTCCTCCTCCCCTCCCTCCACCCTCTTCCTTACTCCCCCGCCCTCCTCCT
CCCCTCCTCCCCTCCTCCCCCCCCAAAAACTGAGGATGGCCTAGACCTCC
TCTCCCTCCAGTCCTCCCTTGCTTCCTCCCCTATCGCGGGGCCCCTCCTC
TCCCTCGCCCTCACCCTCGACCAAGGCCGAGCCCTCCTCACGTTCCTGGA
CGCTGCATCTGAAAAAGAGATGGGAGGAACAGTGGTCATGAGGGGGGGAA
GGGGCCGAGGGAAGACGTGTGCGTTGGGTTTGGGATTGGCTGGGGCCATC
GCCTTCGGATTTTCGAATGTGTTTTTAACGGCCGAGACTCCCCGGAAGGC
CCAAGGGATCTTCAGGTTTGTGTTGAAGGGCTTTGATGTGATGGGATGGA
AGGAGAAGGAGGAGTATGAGGTGGTGGTGCAAGAGCGGCAGCAACCAGAG
GGAAGGAGAGAGGGAGGGACCGATGAAATTCGACCGAGTGCTGCCGGGTC
GGGATGGGGGAGGGAGGAAGGGAAGGGGGGAGGGATGACAGCGATTTTGA
GGATCAATGTGTTCAGAGAGCATCGGCAGACTGTGCAATACATATACCCG
GACGATGGCGCGAGGTTGGAGCAGGCGGAGGTGCTGGCTATCGATGACGC
TGCTTCCCTCTCTCCCTCCCTTGTTGGGAACCTCCTTGGCCCTTACTTGA
CGTTTGTGGCTATCCAGGAAGGGGGGAGGGAGGGGCGGGCCCAGCAGCGG
CTAAAGCGTTGA
back to top

Coding sequence (CDS) from alignment at chr15:242786..244947+

>NO15G00770.2 ID=NO15G00770.2|Name=NO15G00770.2|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr15:242786..244947+ (Nannochloropsis oceanica)
ATGCGTGGCGCCAGCAAGGTCAAGAAAAAGAAAGCTCCTGCATCTCCAGC
GTCTACCTCCCCACCTGTCACAGCAGCTCCCGGACTTACCTCCTCAGACG
CAAACTCCTCCAAAAAACGCCCCCGCCATATGGAAAACAACACTACACCC
ATCATCTGTCCCCCACCTGTGATCCAAGTTTTCGCTAAGTTGGTCAAGAC
GGGCCATCGTGGTGTGTGCGTCCTGCTCTCGTCGCGGCCTGATGCGGAAA
TATCTACAATCTCTACAGCTCTCCTGGCGCTTGTCCAAGGGTGGAAAAGC
GTGGGTGGAAAGGGAAAGGGCGTCATGGTTGTGGCGGACACGGACAAGGC
AACCGCGGGTCCTTTAACGGGCCAGCTGAGGCCCCTCGCATTCACCGACC
TCTCCTCCTTCCCCCTCTCCTCCTCTATCCCCGCCAAATTGGGCCTGTGT
GTGGTGTTTCGCCCTCAAGAGCACCTCTCCCCCTCCATCCTTGCTGCTAC
AGCCAACAGTCTCCAGGGCGGAGGGCTCCTAGTCCTCGTCCTTCCCGAAG
TGGAAGCCTGGGAGGAACTCCATTCAACAGCAGCAGCAGCAGCAAGAGGA
GGAGAAGAAAAAGGAAAGCGCCACCAGCAGGAGCAACTGCAACGACGAAG
ACAAGAACAACAGCAGCAACGACAAGCCGCATCCCGATCCCTCCTCCTCG
ATCGCCTCCTGATCCGCCTCCCCTCCTGCAAGTCCGCCCTCTTCCTCCTC
CCCTCCCTCCACCCTCTTCCTTACTCCCCCGCCCTCCTCCTCCCCTCCTC
CCCTCCTCCCCCCCCAAAAACTGAGGATGGCCTAGACCTCCTCTCCCTCC
AGTCCTCCCTTGCTTCCTCCCCTATCGCGGGGCCCCTCCTCTCCCTCGCC
CTCACCCTCGACCAAGGCCGAGCCCTCCTCACGTTCCTGGACGCTGCATC
TGAAAAAGAGATGGGAGGAACAGTGGTCATGAGGGGGGGAAGGGGCCGAG
GGAAGACGTGTGCGTTGGGTTTGGGATTGGCTGGGGCCATCGCCTTCGGA
TTTTCGAATGTGTTTTTAACGGCCGAGACTCCCCGGAAGGCCCAAGGGAT
CTTCAGGTTTGTGTTGAAGGGCTTTGATGTGATGGGATGGAAGGAGAAGG
AGGAGTATGAGGTGGTGGTGCAAGAGCGGCAGCAACCAGAGGGAAGGAGA
GAGGGAGGGACCGATGAAATTCGACCGAGTGCTGCCGGGTCGGGATGGGG
GAGGGAGGAAGGGAAGGGGGGAGGGATGACAGCGATTTTGAGGATCAATG
TGTTCAGAGAGCATCGGCAGACTGTGCAATACATATACCCGGACGATGGC
GCGAGGTTGGAGCAGGCGGAGGTGCTGGCTATCGATGACGCTGCTTCCCT
CTCTCCCTCCCTTGTTGGGAACCTCCTTGGCCCTTACTTGACGTTTGTGG
CTATCCAGGAAGGGGGGAGGGAGGGGCGGGCCCAGCAGCGGCTAAAGCGT
TGA
back to top
Synonyms
Publications