NO15G00720.1, NO15G00720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00720.1
Unique NameNO15G00720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1779
Alignment locationchr15:231841..234234 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:231841..234234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00720.1 vs.
Match: EWM22516.1 (protein-tyrosine phosphatase mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 351.3 bits (900), Expect = 3.300e-93
Identity = 169/217 (77.88%), Postives = 189/217 (87.10%), Query Frame = 0 
Query:    1 MAPTSQGNEAATTQAIAPLRVALLGMFASGLLSLYFAHDHPYLTALPCVLINCCFLQISFPHGLLFSLIEIPWMMLLFYPIQYLLHIPLQYAFFWLYSPIFVVLARKNKDRHNLLGRLFIRYVWDPPLLACIWLVGKTGLGGDRFLTPFASIIDEEVVMGSLPLPWDVAHLVKEFNIGAVVNMTIEYPGPLEEYALHGVEQLHLPTVDTAAPTLEQV 218
            M  +++GNE+ATTQAIAPLRVALLGMF S +L+L+FA DHPYLTA+PCVLINC FLQISF HGLLFSLIEIPWMMLLF+PIQY+  IP QYAFFWLYSPI ++LAR+ KDRH+LLGRLFI YVWDPPLLACIWLV  TG GGDRFL+PFAS+IDE+VVMGSLPLP DV  L K+F +GAVVNMT EY GPL  YA HG+  LHLPTVDTAAPTLEQV
Sbjct:    1 MPSSAKGNESATTQAIAPLRVALLGMFLSAVLALFFAQDHPYLTAVPCVLINCFFLQISFFHGLLFSLIEIPWMMLLFFPIQYIFRIPCQYAFFWLYSPILIILARRRKDRHSLLGRLFITYVWDPPLLACIWLVAHTGWGGDRFLSPFASVIDEDVVMGSLPLPQDVPQLAKDFGVGAVVNMTREYAGPLVAYAQHGIRHLHLPTVDTAAPTLEQV 217
The following BLAST results are available for this feature:
BLAST of NO15G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22516.13.300e-9377.88protein-tyrosine phosphatase mitochondrial [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00720NO15G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00720.1NO15G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00720.1.cds1NO15G00720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00720.1.cds2NO15G00720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00720.1.cds3NO15G00720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00720.1 ID=NO15G00720.1|Name=NO15G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp
CTTGCTGTGTGGTTTATATGCATATGTGGAAGGGAAGGCGTACGTCAAGT
CCAAGTTGATGTGTGGCAACAAGCCATTTAAATAGCCACCGCACGCAGCG
CGCACCCTCATCACTCGTCATTTGCCTCGTTGATCACATTGTGCTTGTGA
AGTGTCCCTCCTATCGGCGCTCCGAGCAAGCATCTCCCAAGGGCACGGCA
ACAGGGCAAAGCGTGCGTCGGTGCGTGTGGCTCGCCAACAAGACAAGATA
CGAAGCCGCGCTCGCGCAAAAGCGCTCTGTCGTGGCATCTTGGAGGCATT
CCTGTGTGTTAAGTTCGCATTAAACTATGGAAATATGGGACTGTTTTTTG
TTGTAAGAGGCAAGGAAAACCAGCATCTCGAGGAAAGTGTGAGAGCCGTC
CAATTTGTAGACCTTACCTCCCCTTCAACCCCCCCAGACACTACACTGCA
GCACGACGCTACGTCTCAACATTCCCACGTACGCCCCCGCCAGCTAGGCC
CCCCTAGAGTATGAGCATGTCTCACTCCACGCGCACTGCAGGATCCCCAC
CCCAAATTAACCTTGACAAGTTTCAAGTTTCCTCCACTTTCAATAGGCAT
TCCTTGTCCTGCTCATATTGCTTCCATCCCTCATCAAACAGGCCCTAATA
TATTGCCCCCCGACCCCTCCGTATAAGCCACCATGGCTCCCACAAGCCAA
GGCAACGAAGCCGCAACCACCCAAGCTATCGCCCCACTCCGCGTCGCCCT
CCTGGGCATGTTTGCATCCGGGCTCCTTTCCCTCTATTTTGCCCACGACC
ACCCCTATCTGACCGCCCTCCCATGCGTCCTCATCAATTGCTGCTTCCTC
CAGATCTCCTTCCCCCATGGTCTCCTCTTCTCGCTCATCGAGATCCCATG
GATGATGCTTTTGTTTTATCCGATTCAGTACCTCTTGCATATCCCGTTGC
AATACGCATTCTTTTGGCTCTACTCCCCCATCTTTGTTGTCCTGGCCCGG
AAGAACAAAGACAGGCATAACCTCCTCGGGCGTTTATTCATTCGCTATGT
ATGGGACCCCCCTCTATTGGCCTGCATTTGGTTGGTGGGAAAGACCGGTC
TAGGGGGAGACAGATTTCTGACGCCCTTCGCGAGTATCATCGATGAGGAA
GTGGTGATGGGCTCCCTCCCCTTGCCCTGGGATGTGGCTCACTTAGTCAA
GGAGTTCAACATCGGCGCAGTCGTGAACATGACCATCGAATACCCTGGGC
CGTTGGAGGAATATGCTCTACATGGGGTCGAACAACTGCACTTGCCGACC
GTAGACACGGCAGCTCCCACTCTAGAGCAGGTGCACCAAGGCGTGGATTT
CATTGCAGCTTTCCTCAAGGCTCATCCGGGGAAGCGCGTTTTTATCCATT
GCAAGGGGGGACGGGGAAGGGCGGCCGTCATGGCTGCGGCGTGGTACTTG
CGGAAGGCGGGAGGGAAGGAGGCACCGAGGTCGGTCGTGCGGAGATTGAA
AGAGAAGAGGCATGTCGTATCAACAGCGGTGGAAAAATACGAGACGGTGC
AGGCATATCATGCCCTGGTGGTGAAAGAGGGTGGGAAGGAGGAAGGGATG
GAGGAGATGGTGGTGGATGAGAGGACAATGACACGAACGACGACGACGGC
GACAAGTGTGACGAGAAGGAAGGTTGAGTAGGGAGGGAGGGAGGGATGAA
AGGAATGTAGGGAAAGCACCAATGTGCACATAGGAAGGGGGGGTGAAAAA
GAACAATAATAAAGTACAAGGCTTGAGGT
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protein sequence of NO15G00720.1

>NO15G00720.1-protein ID=NO15G00720.1-protein|Name=NO15G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MAPTSQGNEAATTQAIAPLRVALLGMFASGLLSLYFAHDHPYLTALPCVL
INCCFLQISFPHGLLFSLIEIPWMMLLFYPIQYLLHIPLQYAFFWLYSPI
FVVLARKNKDRHNLLGRLFIRYVWDPPLLACIWLVGKTGLGGDRFLTPFA
SIIDEEVVMGSLPLPWDVAHLVKEFNIGAVVNMTIEYPGPLEEYALHGVE
QLHLPTVDTAAPTLEQVHQGVDFIAAFLKAHPGKRVFIHCKGGRGRAAVM
AAAWYLRKAGGKEAPRSVVRRLKEKRHVVSTAVEKYETVQAYHALVVKEG
GKEEGMEEMVVDERTMTRTTTTATSVTRRKVE*
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mRNA from alignment at chr15:231841..234234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00720.1 ID=NO15G00720.1|Name=NO15G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp|location=Sequence derived from alignment at chr15:231841..234234- (Nannochloropsis oceanica)
CTTGCTGTGTGGTTTATATGCATATGTGGAAGGGAAGGCGTACGTCAAGT
CCAAGTTGATGTGTGGCAACAAGCCATTTAAATAGCCACCGCACGCAGCG
CGCACCCTCATCACTCGTCATTTGCCTCGTTGATCACATTGTGCTTGTGA
AGTGTCCCTCCTATCGGCGCTCCGAGCAAGCATCTCCCAAGGGCACGGCA
ACAGGGCAAAGCGTGCGTCGGTGCGTGTGGCTCGCCAACAAGACAAGATA
CGAAGCCGCGCTCGCGCAAAAGCGCTCTGTCGTGGCATCTTGGAGGCATT
CCTGTGTGTTAAGTTCGCATTAAACTATGGAAATATGGGACTGTTTTTTG
TTGTAAGAGGCAAGGAAAACCAGCATCTCGAGGAAAGTGTGAGAGCCGTC
CAATTTGTAGACCTTACCTCCCCTTCAACCCCCCCAGACACTACACTGCA
GCACGACGCTACGTCTCAACATTCCCACGTACGCCCCCGCCAGCTAGGCC
CCCCTAGAGTATGAGCATGTCTCACTCCACGCGCACTGCAGGATCCCCAC
CCCAAATTAACCTTGACAAGTTTCAAGTTTCCTCCACTTTCAATAGGCAT
TCCTTGTCCTGCTCATATTGCTTCCATCCCTCATCAAACAGGCCCTAATA
TATTGCCCCCCGACCCCTCCGTATAAGCCACCATGGCTCCCACAAGCCAA
GGCAACGAAGCCGCAACCACCCAAGCTATCGCCCCACTCCGCGTCGCCCT
CCTGGGCATGTTTGCATCCGGGCTCCTTTCCCTCTATTTTGCCCACGACC
ACCCCTATCTGACCGCCCTCCCATGCGTCCTCATCAATTGCTGCTTCCTC
CAGATCTCCTTCCCCCATGGTCTCCTCTTCTCGCTCATCGAGATCCCATG
GATGATGCTTTTGTTTTATCCGATTCAGTACCTCTTGCATATCCCGTTGC
AATACGCATTCTTTTGGCTCTACTCCCCCATCTTTGTTGTCCTGGCCCGG
AAGAACAAAGACAGGCATAACCTCCTCGGGCGTTTATTCATTCGCTATGT
ATGGGACCCCCCTCTATTGGCCTGCATTTGGTTGGTGGGAAAGACCGGTC
TAGGGGGAGACAGATTTCTGACGCCCTTCGCGAGTATCATCGATGAGGAA
GTGGTGATGGTGAGTGAGTCGGAGGGAAGGAAGGGAGGGTAGGAGGGATA
TGTGGTGGACGGCGCGTCAGGTCAGATGAAGAGATGCGGAAAAGAGGGCG
AGCACGACTCAAGGAAATATGACATTGATGATCAAAAATCACTTCGGTGA
CGAAATTCGCCGCCTTAACTCTCTTCCTCCCTCCACAGGGCTCCCTCCCC
TTGCCCTGGGATGTGGCTCACTTAGTCAAGGAGTTCAACATCGGCGCAGT
CGTGAACATGACCATCGAATACCCTGGGCCGTTGGAGGAATATGCTCTAC
ATGGGGTCGAACAACTGCACTTGCCGACCGTAGACACGGCAGCTCCCACT
CTAGAGCAGGTACGTACACAGAGCGAGGTCTACCTCTTTGTTCCCCGTCT
TATCTTCCCCCCCCACCGGGCCAAAGCATCTAGTGGTGGAAAGGACAGCG
AAGAAGGTGGATGCCCCCCCCAACCCCCCCCCATTCGCAAGCCCTTCTTC
CCCCCTCCTTATGCAAACCCGCACACCTGAATCAGTGACGTGGCATACAG
CGTTCCCCCTCTGCCTACACGTCTTCCTTCCGAGGGTGGAATCATCTCCT
GCCCTACTCTTTATTTTGAATACCTCCTGGACACCGGGTGCATTTAGAGA
GGGTGTTGGTTGTAGACTGTCGTCAGGGAGTATCATTCGCAGAGAGTCCC
AGGGCCAATACCGGAAAACCCCGTCGCGGTCTTTGCTCCCTGCGAGCGTT
CACCAACCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCGTCCGTAGGTGCA
CCAAGGCGTGGATTTCATTGCAGCTTTCCTCAAGGCTCATCCGGGGAAGC
GCGTTTTTATCCATTGCAAGGGGGGACGGGGAAGGGCGGCCGTCATGGCT
GCGGCGTGGTACTTGCGGAAGGCGGGAGGGAAGGAGGCACCGAGGTCGGT
CGTGCGGAGATTGAAAGAGAAGAGGCATGTCGTATCAACAGCGGTGGAAA
AATACGAGACGGTGCAGGCATATCATGCCCTGGTGGTGAAAGAGGGTGGG
AAGGAGGAAGGGATGGAGGAGATGGTGGTGGATGAGAGGACAATGACACG
AACGACGACGACGGCGACAAGTGTGACGAGAAGGAAGGTTGAGTAGGGAG
GGAGGGAGGGATGAAAGGAATGTAGGGAAAGCACCAATGTGCACATAGGA
AGGGGGGGTGAAAAAGAACAATAATAAAGTACAAGGCTTGAGGT
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Coding sequence (CDS) from alignment at chr15:231841..234234-

>NO15G00720.1 ID=NO15G00720.1|Name=NO15G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr15:231841..234234- (Nannochloropsis oceanica)
ATGGCTCCCACAAGCCAAGGCAACGAAGCCGCAACCACCCAAGCTATCGC
CCCACTCCGCGTCGCCCTCCTGGGCATGTTTGCATCCGGGCTCCTTTCCC
TCTATTTTGCCCACGACCACCCCTATCTGACCGCCCTCCCATGCGTCCTC
ATCAATTGCTGCTTCCTCCAGATCTCCTTCCCCCATGGTCTCCTCTTCTC
GCTCATCGAGATCCCATGGATGATGCTTTTGTTTTATCCGATTCAGTACC
TCTTGCATATCCCGTTGCAATACGCATTCTTTTGGCTCTACTCCCCCATC
TTTGTTGTCCTGGCCCGGAAGAACAAAGACAGGCATAACCTCCTCGGGCG
TTTATTCATTCGCTATGTATGGGACCCCCCTCTATTGGCCTGCATTTGGT
TGGTGGGAAAGACCGGTCTAGGGGGAGACAGATTTCTGACGCCCTTCGCG
AGTATCATCGATGAGGAAGTGGTGATGGGCTCCCTCCCCTTGCCCTGGGA
TGTGGCTCACTTAGTCAAGGAGTTCAACATCGGCGCAGTCGTGAACATGA
CCATCGAATACCCTGGGCCGTTGGAGGAATATGCTCTACATGGGGTCGAA
CAACTGCACTTGCCGACCGTAGACACGGCAGCTCCCACTCTAGAGCAGGT
GCACCAAGGCGTGGATTTCATTGCAGCTTTCCTCAAGGCTCATCCGGGGA
AGCGCGTTTTTATCCATTGCAAGGGGGGACGGGGAAGGGCGGCCGTCATG
GCTGCGGCGTGGTACTTGCGGAAGGCGGGAGGGAAGGAGGCACCGAGGTC
GGTCGTGCGGAGATTGAAAGAGAAGAGGCATGTCGTATCAACAGCGGTGG
AAAAATACGAGACGGTGCAGGCATATCATGCCCTGGTGGTGAAAGAGGGT
GGGAAGGAGGAAGGGATGGAGGAGATGGTGGTGGATGAGAGGACAATGAC
ACGAACGACGACGACGGCGACAAGTGTGACGAGAAGGAAGGTTGAGTAG
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Synonyms
Publications