NO15G00660.2, NO15G00660.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00660.2
Unique NameNO15G00660.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2085
Alignment locationchr15:217481..219864 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:217481..219864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00660.2 vs.
Match: EWM22521.1 (glutamyl-trna b subunit [Nannochloropsis gaditana])

HSP 1 Score: 506.1 bits (1302), Expect = 1.100e-139
Identity = 292/472 (61.86%), Postives = 341/472 (72.25%), Query Frame = 0 
Query:    2 EEEEEAAWPATTVRIARLQLEQDSGKSTHEAGGREGGRTLIDLNRAGAALMEIVFEPDLCTPSQAAELVRSLQATLRELGTCDGHMDEGSLRCDLNVSVRPTAAAPAASAAALPWGPRAEIKNLNSLKSLQTAAAYEIARQIALSEENDNQNGGRAGS-GGETAGRAAG------VRGETRSFNVLTGKTTRMRGKEGAVDYRFFPEPDLPPLVLKEEVIEELREGLPELPQAMRARLEGTYGLTPYQSSVLVREGRRAVRFFEEVVKGGEGARDGRNVANWICNDLVGLLKAKAAAAGAGGGVA-PSSPFISSSADDTPSSEAVTAAGGGEGGLFSSSSCLVTPPAMGELNDLVASGAISIRTGKEVLSIMVEG-----REGGDEEWRRMMPSEIVEARGWGQISDEEVLRDVARKVARDPGSERQRRQYTEGKERQMMKYFVGQAMKATGGRAHPERMEGLLREMLGEGE 461
            ++ EEAAWP   VRIARLQ+EQDSGKSTH++ G  G  TL+DLNRAG ALMEIVFEP+L +PSQAA  +RSLQATLR L +CDG M+EGSLRCDLNVSVRP   +PA      PWGPR E+KNLNSLK+LQTAAA+EI RQIAL +  D    G AG+ GG+   R  G      V  ETR+FN  TG+TTRMRGKEGAVDYRFFPEPDLPPLVL  + +E +R GLPELPQA R+RL   +GLTP Q+ VL+ EG  AV FFE+VV+GG G R+GR VANW+CNDL+GL+KAKA+A   G G A  +SP+         SS A+T    G+ G   ++S  V P AMGEL D+V+ G ISIRTGKEVL++MV G       GG    +R  P EIV ARGWGQ+SDE VL  VAR V RDPGS RQRRQY EGKE+QMMK+FVGQAMK TGGRAHP RME LLR  L + E
Sbjct:   92 DDPEEAAWPPFRVRIARLQIEQDSGKSTHDSAG--GRHTLVDLNRAGVALMEIVFEPELSSPSQAAACLRSLQATLRALDSCDGLMEEGSLRCDLNVSVRPAPPSPAFPPG--PWGPRVEVKNLNSLKALQTAAAFEIQRQIALHDPGDASRAGMAGTEGGQDLSRFNGHFEFKSVERETRAFNAATGETTRMRGKEGAVDYRFFPEPDLPPLVLDMDWVEAVRRGLPELPQATRSRLVEEHGLTPAQAEVLIGEGEAAVGFFEDVVRGG-GGREGRGVANWVCNDLIGLVKAKASAGKGGKGCAVVASPY--------TSSPALT----GQAGASPTASYAVHPEAMGELIDMVSGGEISIRTGKEVLALMVAGGSEDEEGGGRGGEKRQRPREIVAARGWGQVSDETVLIGVARNVVRDPGSARQRRQYKEGKEKQMMKFFVGQAMKETGGRAHPGRMETLLRVELRKAE 546
The following BLAST results are available for this feature:
BLAST of NO15G00660.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22521.11.100e-13961.86glutamyl-trna b subunit [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00660NO15G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00660.2NO15G00660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00660.2.cds1NO15G00660.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00660.2 ID=NO15G00660.2|Name=NO15G00660.2|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp
ACAGGGAAGGAAAAACGCTGCACAAATGGCCACAACCGTAGGAAAATTCA
AGAGCGCCAGCGGCAAGTTGTGGGAGGCATGTATCGGCTTGGAAGTGCAC
GCACAGATCCGTGTGCGTACCAAGCTTTTTTCGGGCGCATCTGCCGAGGT
TACGCAATACACCAAACCCAACACTCATGTCGCATTTCTTGATGCCGCCT
TGCCAGGCACCCTCCCTGTTCTCAACCAAGAAGCTGTGCACCAAGCCCTT
CGAACCGCCATTGCCCTGGGATGTGACATTAATAGGGTCTCTCGGTTCGA
ACGGAAGCATTATTTTTATTGTGACCTGCCACAAGGGTACCAGATCACGC
AGCAGGCGTTGCCGATTGCCACGGGGTGAGAGGGAGGAAGGGAGGAAGGA
GGAGGGGAGGCAAAACATAATCGAAGGAAGGAGAATAATTCTCGCGAAGT
CTCTGACTGCAATTCTCACAGGTGTCCCCATTTGCTCACCACCACTCCCT
CACTCCCTCCCTGCCTATCTTCCCCCTTCCCCTCCAGTGGCACCCTCCGC
ATCGAGCCCCCCATCCACGATAATCAACGGCAAAGAAGCGCGCGTAAGAA
ACCTGTGTCCTCCTCCCCGACCCCTTCCATTGTCAAAATGGAAGAAGAGG
AGGAAGCAGCCTGGCCAGCCACTACCGTGCGCATTGCCCGTCTCCAGCTC
GAGCAAGACTCGGGGAAATCCACCCACGAAGCAGGAGGGAGGGAAGGAGG
GCGTACTCTCATCGACCTGAACAGGGCCGGGGCTGCGTTGATGGAGATTG
TGTTTGAGCCTGACCTGTGCACTCCCTCGCAGGCGGCGGAGCTGGTGCGA
TCGTTGCAAGCCACGTTGAGGGAGTTGGGGACGTGTGATGGGCACATGGA
TGAAGGCTCATTACGGTGTGATCTAAATGTCTCTGTACGCCCCACCGCTG
CTGCTCCTGCTGCTTCTGCTGCTGCTCTTCCTTGGGGTCCACGGGCAGAG
ATCAAGAATTTGAACTCCCTCAAGTCGTTGCAGACGGCAGCTGCCTATGA
AATAGCCCGACAGATTGCCTTGAGCGAAGAAAATGACAACCAGAACGGAG
GAAGGGCAGGATCAGGAGGAGAAACAGCAGGAAGAGCAGCAGGAGTGAGG
GGAGAGACAAGGTCTTTCAACGTCCTGACCGGCAAGACAACGAGGATGAG
GGGGAAGGAAGGGGCAGTCGACTACCGCTTTTTCCCCGAACCGGACCTCC
CCCCCCTGGTGCTGAAGGAGGAAGTCATCGAGGAACTGAGAGAGGGCCTG
CCAGAGCTTCCGCAAGCAATGCGAGCGCGATTAGAGGGGACGTATGGATT
GACACCTTATCAGTCGAGCGTCCTGGTGAGGGAGGGAAGGAGGGCAGTGC
GATTTTTTGAGGAGGTGGTGAAGGGAGGAGAGGGAGCGAGGGATGGAAGA
AATGTGGCTAATTGGATTTGTAACGATTTGGTGGGCTTGCTCAAGGCTAA
GGCGGCGGCTGCTGGTGCTGGTGGAGGAGTTGCGCCATCCTCCCCCTTCA
TATCCTCCTCTGCCGATGACACACCGTCATCAGAGGCAGTGACAGCAGCA
GGAGGGGGGGAGGGGGGATTATTCTCCTCATCCTCCTGTCTCGTCACTCC
TCCAGCGATGGGTGAGTTGAACGACCTTGTCGCAAGTGGCGCCATCTCCA
TTCGGACAGGAAAGGAAGTATTGAGCATAATGGTGGAAGGGAGGGAGGGA
GGGGACGAAGAATGGAGGAGGATGATGCCGAGTGAGATCGTGGAGGCCCG
AGGGTGGGGGCAAATAAGCGATGAGGAGGTCCTTCGAGATGTGGCAAGGA
AGGTTGCGCGAGACCCAGGGTCGGAAAGACAGAGGAGGCAGTATACGGAG
GGGAAGGAGAGGCAGATGATGAAGTATTTTGTGGGCCAGGCCATGAAGGC
CACGGGGGGGAGGGCACATCCCGAGAGGATGGAGGGATTGTTGAGGGAGA
TGCTTGGGGAGGGGGAGGGGAAGGGTGAGTGAGTAGGAAGGAGTAAAAAA
CGATCCATTCTCAAAGTAAAAGATGATATGAGCTA
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protein sequence of NO15G00660.2

>NO15G00660.2-protein ID=NO15G00660.2-protein|Name=NO15G00660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MEEEEEAAWPATTVRIARLQLEQDSGKSTHEAGGREGGRTLIDLNRAGAA
LMEIVFEPDLCTPSQAAELVRSLQATLRELGTCDGHMDEGSLRCDLNVSV
RPTAAAPAASAAALPWGPRAEIKNLNSLKSLQTAAAYEIARQIALSEEND
NQNGGRAGSGGETAGRAAGVRGETRSFNVLTGKTTRMRGKEGAVDYRFFP
EPDLPPLVLKEEVIEELREGLPELPQAMRARLEGTYGLTPYQSSVLVREG
RRAVRFFEEVVKGGEGARDGRNVANWICNDLVGLLKAKAAAAGAGGGVAP
SSPFISSSADDTPSSEAVTAAGGGEGGLFSSSSCLVTPPAMGELNDLVAS
GAISIRTGKEVLSIMVEGREGGDEEWRRMMPSEIVEARGWGQISDEEVLR
DVARKVARDPGSERQRRQYTEGKERQMMKYFVGQAMKATGGRAHPERMEG
LLREMLGEGEGKGE*
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mRNA from alignment at chr15:217481..219864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00660.2 ID=NO15G00660.2|Name=NO15G00660.2|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp|location=Sequence derived from alignment at chr15:217481..219864+ (Nannochloropsis oceanica)
ACAGGGAAGGAAAAACGCTGCACAAATGGCCACAACCGTAGGAAAATTCA
AGAGCGCCAGCGGCAAGTTGTGGGAGGTAAGTTAGCCAAGGCTCAAGTAA
TGGGGGGGAGTATCAAGGGCAGCTCCTAGGCCTCGTTCTCCTTTCCTTCA
CGCACATTCCCATCAAATACACTTGCATTATACTGTCAGGCATGTATCGG
CTTGGAAGTGCACGCACAGATCCGTGTGCGTACCAAGCTTTTTTCGGGCG
CATCTGCCGAGGTTACGCAATACACCAAACCCAACACTCATGTCGCATTT
CTTGATGCCGCCTTGCCAGGTAGGCGGAAGGGAAAAGGAAGGGGGGAAAG
GTAGTAGACAGAAGAAACGGAGGAAAGAATGGCTTATTTAGTCGGAGTTG
TGTACATAGGAAATTATGCTTGTTGCATTTGAGCGCTTTTGAGGATCACC
CAAGCAAGACCAACCTCCCCTCTCTCCCCTCCCTCTCTCCCGCCCTCCCC
ACCAGGCACCCTCCCTGTTCTCAACCAAGAAGCTGTGCACCAAGCCCTTC
GAACCGCCATTGCCCTGGGATGTGACATTAATAGGGTCTCTCGGTTCGAA
CGGAAGCATTATTTTTATTGTGACCTGCCACAAGGGTACCAGATCACGCA
GCAGGCGTTGCCGATTGCCACGGGGTGAGAGGGAGGAAGGGAGGAAGGAG
GAGGGGAGGCAAAACATAATCGAAGGAAGGAGAATAATTCTCGCGAAGTC
TCTGACTGCAATTCTCACAGGTGTCCCCATTTGCTCACCACCACTCCCTC
ACTCCCTCCCTGCCTATCTTCCCCCTTCCCCTCCAGTGGCACCCTCCGCA
TCGAGCCCCCCATCCACGATAATCAACGGCAAAGAAGCGCGCGTAAGAAA
CCTGTGTCCTCCTCCCCGACCCCTTCCATTGTCAAAATGGAAGAAGAGGA
GGAAGCAGCCTGGCCAGCCACTACCGTGCGCATTGCCCGTCTCCAGCTCG
AGCAAGACTCGGGGAAATCCACCCACGAAGCAGGAGGGAGGGAAGGAGGG
CGTACTCTCATCGACCTGAACAGGGCCGGGGCTGCGTTGATGGAGATTGT
GTTTGAGCCTGACCTGTGCACTCCCTCGCAGGCGGCGGAGCTGGTGCGAT
CGTTGCAAGCCACGTTGAGGGAGTTGGGGACGTGTGATGGGCACATGGAT
GAAGGCTCATTACGGTGTGATCTAAATGTCTCTGTACGCCCCACCGCTGC
TGCTCCTGCTGCTTCTGCTGCTGCTCTTCCTTGGGGTCCACGGGCAGAGA
TCAAGAATTTGAACTCCCTCAAGTCGTTGCAGACGGCAGCTGCCTATGAA
ATAGCCCGACAGATTGCCTTGAGCGAAGAAAATGACAACCAGAACGGAGG
AAGGGCAGGATCAGGAGGAGAAACAGCAGGAAGAGCAGCAGGAGTGAGGG
GAGAGACAAGGTCTTTCAACGTCCTGACCGGCAAGACAACGAGGATGAGG
GGGAAGGAAGGGGCAGTCGACTACCGCTTTTTCCCCGAACCGGACCTCCC
CCCCCTGGTGCTGAAGGAGGAAGTCATCGAGGAACTGAGAGAGGGCCTGC
CAGAGCTTCCGCAAGCAATGCGAGCGCGATTAGAGGGGACGTATGGATTG
ACACCTTATCAGTCGAGCGTCCTGGTGAGGGAGGGAAGGAGGGCAGTGCG
ATTTTTTGAGGAGGTGGTGAAGGGAGGAGAGGGAGCGAGGGATGGAAGAA
ATGTGGCTAATTGGATTTGTAACGATTTGGTGGGCTTGCTCAAGGCTAAG
GCGGCGGCTGCTGGTGCTGGTGGAGGAGTTGCGCCATCCTCCCCCTTCAT
ATCCTCCTCTGCCGATGACACACCGTCATCAGAGGCAGTGACAGCAGCAG
GAGGGGGGGAGGGGGGATTATTCTCCTCATCCTCCTGTCTCGTCACTCCT
CCAGCGATGGGTGAGTTGAACGACCTTGTCGCAAGTGGCGCCATCTCCAT
TCGGACAGGAAAGGAAGTATTGAGCATAATGGTGGAAGGGAGGGAGGGAG
GGGACGAAGAATGGAGGAGGATGATGCCGAGTGAGATCGTGGAGGCCCGA
GGGTGGGGGCAAATAAGCGATGAGGAGGTCCTTCGAGATGTGGCAAGGAA
GGTTGCGCGAGACCCAGGGTCGGAAAGACAGAGGAGGCAGTATACGGAGG
GGAAGGAGAGGCAGATGATGAAGTATTTTGTGGGCCAGGCCATGAAGGCC
ACGGGGGGGAGGGCACATCCCGAGAGGATGGAGGGATTGTTGAGGGAGAT
GCTTGGGGAGGGGGAGGGGAAGGGTGAGTGAGTAGGAAGGAGTAAAAAAC
GATCCATTCTCAAAGTAAAAGATGATATGAGCTA
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Coding sequence (CDS) from alignment at chr15:217481..219864+

>NO15G00660.2 ID=NO15G00660.2|Name=NO15G00660.2|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr15:217481..219864+ (Nannochloropsis oceanica)
ATGGAAGAAGAGGAGGAAGCAGCCTGGCCAGCCACTACCGTGCGCATTGC
CCGTCTCCAGCTCGAGCAAGACTCGGGGAAATCCACCCACGAAGCAGGAG
GGAGGGAAGGAGGGCGTACTCTCATCGACCTGAACAGGGCCGGGGCTGCG
TTGATGGAGATTGTGTTTGAGCCTGACCTGTGCACTCCCTCGCAGGCGGC
GGAGCTGGTGCGATCGTTGCAAGCCACGTTGAGGGAGTTGGGGACGTGTG
ATGGGCACATGGATGAAGGCTCATTACGGTGTGATCTAAATGTCTCTGTA
CGCCCCACCGCTGCTGCTCCTGCTGCTTCTGCTGCTGCTCTTCCTTGGGG
TCCACGGGCAGAGATCAAGAATTTGAACTCCCTCAAGTCGTTGCAGACGG
CAGCTGCCTATGAAATAGCCCGACAGATTGCCTTGAGCGAAGAAAATGAC
AACCAGAACGGAGGAAGGGCAGGATCAGGAGGAGAAACAGCAGGAAGAGC
AGCAGGAGTGAGGGGAGAGACAAGGTCTTTCAACGTCCTGACCGGCAAGA
CAACGAGGATGAGGGGGAAGGAAGGGGCAGTCGACTACCGCTTTTTCCCC
GAACCGGACCTCCCCCCCCTGGTGCTGAAGGAGGAAGTCATCGAGGAACT
GAGAGAGGGCCTGCCAGAGCTTCCGCAAGCAATGCGAGCGCGATTAGAGG
GGACGTATGGATTGACACCTTATCAGTCGAGCGTCCTGGTGAGGGAGGGA
AGGAGGGCAGTGCGATTTTTTGAGGAGGTGGTGAAGGGAGGAGAGGGAGC
GAGGGATGGAAGAAATGTGGCTAATTGGATTTGTAACGATTTGGTGGGCT
TGCTCAAGGCTAAGGCGGCGGCTGCTGGTGCTGGTGGAGGAGTTGCGCCA
TCCTCCCCCTTCATATCCTCCTCTGCCGATGACACACCGTCATCAGAGGC
AGTGACAGCAGCAGGAGGGGGGGAGGGGGGATTATTCTCCTCATCCTCCT
GTCTCGTCACTCCTCCAGCGATGGGTGAGTTGAACGACCTTGTCGCAAGT
GGCGCCATCTCCATTCGGACAGGAAAGGAAGTATTGAGCATAATGGTGGA
AGGGAGGGAGGGAGGGGACGAAGAATGGAGGAGGATGATGCCGAGTGAGA
TCGTGGAGGCCCGAGGGTGGGGGCAAATAAGCGATGAGGAGGTCCTTCGA
GATGTGGCAAGGAAGGTTGCGCGAGACCCAGGGTCGGAAAGACAGAGGAG
GCAGTATACGGAGGGGAAGGAGAGGCAGATGATGAAGTATTTTGTGGGCC
AGGCCATGAAGGCCACGGGGGGGAGGGCACATCCCGAGAGGATGGAGGGA
TTGTTGAGGGAGATGCTTGGGGAGGGGGAGGGGAAGGGTGAGTGA
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Synonyms
Publications