NO15G00650.1, NO15G00650.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G00650.1
Unique Name	NO15G00650.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1110
Alignment location	chr15:216156..217265 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:216156..217265 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO15G00650.1 vs.

BLAST of NO15G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G00650	NO15G00650	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00650.1	NO15G00650.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00650.1.cds1	NO15G00650.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:216156..217265-
coding sequence from alignment at chr15:216156..217265-

mRNA sequence

>NO15G00650.1 ID=NO15G00650.1|Name=NO15G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ATGGCGGATGCAGGCAGCACTCAAAGGAAGAAAAAGAAGAGAGTGATCCG
TGCAAGAGACGATGGCTCTGATGAAAGCGACGACGACATGCTCGACTTGC
AGACCTCATCCACCACCACCGGCAACGCAGCCACGACAACTTCACGACCA
CGTGCCGTACCTCCATCACCGTCATTACAACCACCGTCAAAAGCTGCTGA
GGTAAAGTCCAAGAAGAAAAAGATAAAATCTGAAGAAGTACCTGCTGTCC
CGCCCAGCAAACCTGTCGACCCGCGCCAAGCCGGACAGAAAGCGGCAGCA
GCAATAATGGCGGCAGTAGCAGCAGTCAAGCTCAAGGCACCTCGCAGCCC
GCCCCTCCCCAAGAAAAGGAAGCTGCCGACAGAACTTCCAGCTTCTTTGT
CGTCGTCCTCCTCCTCCTTTTCCTCCCTCCCGCCTTCTTCCTCCTCTTCC
TCTTCCTTACCACGAAAAGGAGCAAAAGACCCAAATGCTGTCGAGGAAGC
CGCATCAACCACTCTCCTTGATCCAAGCATTGATGCCGGACGGGGAACGG
GCACGCATAAACCCAAACGCCCCACCATGGCCCGGCCCCTCTCCTCCTTC
CCTTTTTCCCTCTCTGCATCCTCCTCTTCCTCCTCTACCTCCTCCACTTC
TGCTTCTTTCCGCTCACCCTCAGGAGGAGATATGATGACGAATAGGGATA
AGGAGGTAGGTAAGACAAGGGCGGATTTCGACCGTGAGCTGTTAGATTGG
GACTTTCTGACGGCATGGGAGGAGGAGATCAAGCCCGTCCCTTCCTCGTA
CTCGAACGCGAATGGCAAGGGGGAGGATGAAGAAGATGGACGAGAAGGAA
GTGAGGAGGAATCAGAGGACGGCAAAATGAATGGCAGCCCAAAACCAGTG
CAGCGCTGGACGCCGGTGCCGGACACGTTCACCTCCGCCTCCCATTATGT
TGACGTGTGGTTTCCGCTCTTGCTCCAGGAAATGCGCGCCGAGACCTTGT
CGGATATAGGCACGGAGGGCGTAGGGCCCTTTACCAAGGTGCAGGTGGAG
GGAGGGGGGGAGAGAGGGGGGGGAGGGGGGGGAGGGGGTCGCAAGGGCTG
GAGACGTTGA

protein sequence of NO15G00650.1

>NO15G00650.1-protein ID=NO15G00650.1-protein|Name=NO15G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MADAGSTQRKKKKRVIRARDDGSDESDDDMLDLQTSSTTTGNAATTTSRP
RAVPPSPSLQPPSKAAEVKSKKKKIKSEEVPAVPPSKPVDPRQAGQKAAA
AIMAAVAAVKLKAPRSPPLPKKRKLPTELPASLSSSSSSFSSLPPSSSSS
SSLPRKGAKDPNAVEEAASTTLLDPSIDAGRGTGTHKPKRPTMARPLSSF
PFSLSASSSSSSTSSTSASFRSPSGGDMMTNRDKEVGKTRADFDRELLDW
DFLTAWEEEIKPVPSSYSNANGKGEDEEDGREGSEEESEDGKMNGSPKPV
QRWTPVPDTFTSASHYVDVWFPLLLQEMRAETLSDIGTEGVGPFTKVQVE
GGGERGGGGGGGGRKGWRR*

mRNA from alignment at chr15:216156..217265-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G00650.1 ID=NO15G00650.1|Name=NO15G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp|location=Sequence derived from alignment at chr15:216156..217265- (Nannochloropsis oceanica)
ATGGCGGATGCAGGCAGCACTCAAAGGAAGAAAAAGAAGAGAGTGATCCG
TGCAAGAGACGATGGCTCTGATGAAAGCGACGACGACATGCTCGACTTGC
AGACCTCATCCACCACCACCGGCAACGCAGCCACGACAACTTCACGACCA
CGTGCCGTACCTCCATCACCGTCATTACAACCACCGTCAAAAGCTGCTGA
GGTAAAGTCCAAGAAGAAAAAGATAAAATCTGAAGAAGTACCTGCTGTCC
CGCCCAGCAAACCTGTCGACCCGCGCCAAGCCGGACAGAAAGCGGCAGCA
GCAATAATGGCGGCAGTAGCAGCAGTCAAGCTCAAGGCACCTCGCAGCCC
GCCCCTCCCCAAGAAAAGGAAGCTGCCGACAGAACTTCCAGCTTCTTTGT
CGTCGTCCTCCTCCTCCTTTTCCTCCCTCCCGCCTTCTTCCTCCTCTTCC
TCTTCCTTACCACGAAAAGGAGCAAAAGACCCAAATGCTGTCGAGGAAGC
CGCATCAACCACTCTCCTTGATCCAAGCATTGATGCCGGACGGGGAACGG
GCACGCATAAACCCAAACGCCCCACCATGGCCCGGCCCCTCTCCTCCTTC
CCTTTTTCCCTCTCTGCATCCTCCTCTTCCTCCTCTACCTCCTCCACTTC
TGCTTCTTTCCGCTCACCCTCAGGAGGAGATATGATGACGAATAGGGATA
AGGAGGTAGGTAAGACAAGGGCGGATTTCGACCGTGAGCTGTTAGATTGG
GACTTTCTGACGGCATGGGAGGAGGAGATCAAGCCCGTCCCTTCCTCGTA
CTCGAACGCGAATGGCAAGGGGGAGGATGAAGAAGATGGACGAGAAGGAA
GTGAGGAGGAATCAGAGGACGGCAAAATGAATGGCAGCCCAAAACCAGTG
CAGCGCTGGACGCCGGTGCCGGACACGTTCACCTCCGCCTCCCATTATGT
TGACGTGTGGTTTCCGCTCTTGCTCCAGGAAATGCGCGCCGAGACCTTGT
CGGATATAGGCACGGAGGGCGTAGGGCCCTTTACCAAGGTGCAGGTGGAG
GGAGGGGGGGAGAGAGGGGGGGGAGGGGGGGGAGGGGGTCGCAAGGGCTG
GAGACGTTGA

Coding sequence (CDS) from alignment at chr15:216156..217265-

>NO15G00650.1 ID=NO15G00650.1|Name=NO15G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr15:216156..217265- (Nannochloropsis oceanica)
ATGGCGGATGCAGGCAGCACTCAAAGGAAGAAAAAGAAGAGAGTGATCCG
TGCAAGAGACGATGGCTCTGATGAAAGCGACGACGACATGCTCGACTTGC
AGACCTCATCCACCACCACCGGCAACGCAGCCACGACAACTTCACGACCA
CGTGCCGTACCTCCATCACCGTCATTACAACCACCGTCAAAAGCTGCTGA
GGTAAAGTCCAAGAAGAAAAAGATAAAATCTGAAGAAGTACCTGCTGTCC
CGCCCAGCAAACCTGTCGACCCGCGCCAAGCCGGACAGAAAGCGGCAGCA
GCAATAATGGCGGCAGTAGCAGCAGTCAAGCTCAAGGCACCTCGCAGCCC
GCCCCTCCCCAAGAAAAGGAAGCTGCCGACAGAACTTCCAGCTTCTTTGT
CGTCGTCCTCCTCCTCCTTTTCCTCCCTCCCGCCTTCTTCCTCCTCTTCC
TCTTCCTTACCACGAAAAGGAGCAAAAGACCCAAATGCTGTCGAGGAAGC
CGCATCAACCACTCTCCTTGATCCAAGCATTGATGCCGGACGGGGAACGG
GCACGCATAAACCCAAACGCCCCACCATGGCCCGGCCCCTCTCCTCCTTC
CCTTTTTCCCTCTCTGCATCCTCCTCTTCCTCCTCTACCTCCTCCACTTC
TGCTTCTTTCCGCTCACCCTCAGGAGGAGATATGATGACGAATAGGGATA
AGGAGGTAGGTAAGACAAGGGCGGATTTCGACCGTGAGCTGTTAGATTGG
GACTTTCTGACGGCATGGGAGGAGGAGATCAAGCCCGTCCCTTCCTCGTA
CTCGAACGCGAATGGCAAGGGGGAGGATGAAGAAGATGGACGAGAAGGAA
GTGAGGAGGAATCAGAGGACGGCAAAATGAATGGCAGCCCAAAACCAGTG
CAGCGCTGGACGCCGGTGCCGGACACGTTCACCTCCGCCTCCCATTATGT
TGACGTGTGGTTTCCGCTCTTGCTCCAGGAAATGCGCGCCGAGACCTTGT
CGGATATAGGCACGGAGGGCGTAGGGCCCTTTACCAAGGTGCAGGTGGAG
GGAGGGGGGGAGAGAGGGGGGGGAGGGGGGGGAGGGGGTCGCAAGGGCTG
GAGACGTTGA

Synonyms

Publications