NO15G00300.1, NO15G00300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00300.1
Unique NameNO15G00300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1172
Alignment locationchr15:94163..96510 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:94163..96510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00300.1 vs.
Match: CBN75651.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 171.8 bits (434), Expect = 3.900e-39
Identity = 106/232 (45.69%), Postives = 138/232 (59.48%), Query Frame = 0 
Query:   48 RVDVIGLQ--RLSRHPHASERFAQLMGRFGQATNALSFLFSLLGTSYVVRTLGLPSTLRIFPCLLIFASIAAFFYPYLGVLFFFVSILKALSYSLNEPCKEMLYIPTSDTIRFKAKAWIDVFGVRTAKAIGSIVTNMAKDNPDALVKIGSIPSWIVSVSLLFISIYMGRAFEALQESGDVIGQAKVPLSQAGEGTAEGEGGREGGREGGRASWSPRGQGEEGEGMLSPGVEG 278
            ++ V+G++  R +    A E  A LMG FGQ TN+LS + SL GTS  VR LGL  TLRIFP LL+ A + +FF P L  LF  V+ILK L+Y+LNEPCKEMLY+PTSD I+FKAK WIDVFG R AK +GS VT  ++ +   L   G + S+++S+ LL +S  MG  F+AL +SG+++G               GE G + G  G   S    G G  G   L P   G
Sbjct:  322 QMKVLGVEMFRETAGDEADEHMASLMGHFGQTTNSLSLIMSLFGTSLCVRLLGLRKTLRIFPTLLVVAVVTSFFAPSLSFLFVAVAILKGLTYALNEPCKEMLYLPTSDAIKFKAKGWIDVFGSRCAKGVGSFVTLSSRGDRRRLATYGGVASFLISLILLGVSYVMGGHFDALIKSGEIVG--------------AGEDGDDSGNAGAPPSHRGDGLGTTGGVELPPPASG 539
The following BLAST results are available for this feature:
BLAST of NO15G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN75651.13.900e-3945.69conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00300NO15G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00300.1NO15G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00300.1.cds1NO15G00300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00300.1.cds2NO15G00300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00300.1.cds3NO15G00300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00300.1.cds4NO15G00300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00300.1.cds5NO15G00300.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00300.1.cds6NO15G00300.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00300.1.cds7NO15G00300.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00300.1.cds8NO15G00300.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00300.1 ID=NO15G00300.1|Name=NO15G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
ATGGACGGACTCTCGGCAGAAGCCGCAGCAGCAGCCGCAGCTGCAGTAGC
AGTAGTAGATGAAGAGCAGGAGGAAGGCAAGCGATCACAGTCCTACCCAA
CCAGTGCTTCACTAAGCGCGAGGCGTGGTACTGCATCACTGCGGGTCGAT
GTCATCGGCCTCCAACGGCTTTCCAGGCACCCGCACGCCTCCGAACGTTT
CGCCCAACTGATGGGCCGTTTCGGCCAAGCCACCAACGCCCTCTCCTTTC
TCTTTTCCCTGCTAGGCACGAGCTACGTCGTTCGCACCCTTGGCTTGCCC
TCCACCCTTCGAATCTTCCCCTGCCTCCTCATCTTCGCCTCCATCGCGGC
TTTCTTCTACCCGTACCTCGGGGTCCTCTTCTTCTTCGTCTCCATCCTTA
AAGCCCTCTCCTACTCGTTGAACGAACCCTGCAAAGAAATGCTCTACATT
CCCACCTCCGACACCATCCGGTTCAAAGCCAAGGCATGGATCGACGTCTT
TGGAGTCCGCACTGCCAAAGCCATCGGCTCCATCGTCACCAACATGGCCA
AAGACAACCCCGACGCCCTCGTCAAGATCGGATCCATCCCCTCCTGGATA
GTCTCCGTCTCCCTCCTCTTCATCTCCATCTACATGGGCCGAGCCTTCGA
AGCACTGCAGGAATCGGGCGACGTCATCGGACAAGCGAAAGTCCCTCTTT
CCCAAGCAGGGGAAGGGACTGCCGAAGGAGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGCCTCCTGGTCACCAAGAGGTCAAGGAGAAGAGGG
GGAGGGCATGCTGAGTCCGGGTGTGGAGGGCGGTATCTTCGATCCGTTCC
TGGAGGCCGAGGTCGCAACGACGCCTTCCAAAGGTCTGTGGGAAGGGGAG
GAGGAGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGTGGAGCTGGC
GTTGTTTGGATTGGTGAGAGGGGAAAGTGCGTATCATCCCAGCGGCGGGA
GCAGTCCACGAGGAGGGGGAGGGGGAGGGAGAGACGGAGGGAGGTCTCGC
TCGCCATCGCCAGTGGGAAGTCGGGTCATTTCGGTGTAGGGAGAGAGAGA
GGGAGGAGGGAGAGAGGGAGAGAAGGAGGAAAATAACTTTAAAACGAAGC
ACCAAATGCGTGTATCAGGCCA
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protein sequence of NO15G00300.1

>NO15G00300.1-protein ID=NO15G00300.1-protein|Name=NO15G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MDGLSAEAAAAAAAAVAVVDEEQEEGKRSQSYPTSASLSARRGTASLRVD
VIGLQRLSRHPHASERFAQLMGRFGQATNALSFLFSLLGTSYVVRTLGLP
STLRIFPCLLIFASIAAFFYPYLGVLFFFVSILKALSYSLNEPCKEMLYI
PTSDTIRFKAKAWIDVFGVRTAKAIGSIVTNMAKDNPDALVKIGSIPSWI
VSVSLLFISIYMGRAFEALQESGDVIGQAKVPLSQAGEGTAEGEGGREGG
REGGRASWSPRGQGEEGEGMLSPGVEGGIFDPFLEAEVATTPSKGLWEGE
EERGREGGREGGEVELALFGLVRGESAYHPSGGSSPRGGGGGGRDGGRSR
SPSPVGSRVISV*
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mRNA from alignment at chr15:94163..96510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00300.1 ID=NO15G00300.1|Name=NO15G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2348bp|location=Sequence derived from alignment at chr15:94163..96510+ (Nannochloropsis oceanica)
ATGGACGGACTCTCGGCAGAAGCCGCAGCAGCAGCCGCAGCTGCAGTAGC
AGTAGTAGATGAAGAGCAGGAGGAAGGCAAGCGATCACAGTCCTACCCAA
CCAGTGCTTCACTAAGCGCGAGGCGTGGTACTGCATCACTGCGGGTCGAT
GTGGGGAGGTCGGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTCCCTCCCTCCCTAAATCCCTAACTCTCTCAAT
TGATCTCTCCCTCCTCTCTCAATGTTTCTCACCTCCTTCCTTCCCTTTCT
CCCTCCCTCCCTCAGGTCATCGGCCTCCAACGGCTTTCCAGGCACCCGCA
CGCCTCCGAACGTTTCGCCCAACTGATGGGCCGTTTCGGCCAAGCCACCA
ACGCCCTCTCCTTTCTCTTTTCCCTGCTAGGCACGAGGTAGGAATTGAGA
AAGGGAGCGAGGGAGGGCAGACCGTGAGCCTGAGTGCATCAGCTGCATCC
GGGTATCAATCTTTGCCTTCTTTATCTCCCACCGAGTACCTACCTCCCTC
CCTCCCTCCCTCCCTCCCTCCGACCAGCTACGTCGTTCGCACCCTTGGCT
TGCCCTCCACCCTTCGAATCTTCCCCTGCCTCCTCATCTTCGCCTCCATC
GCGGCTTTCTTCTACCCGTACCTCGGGGTACGTCCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCGTTCCCTCCCTCCCTCCCTCCTTCTTCACGCTCGCT
CCCTTCCTCCCCTCTCTGCCCACGCTTTTTCTCTCCTCCTTACTACCCCG
CCTCATTCTTACCTCCCTTCCTCTCCCCTCCTCTCCCCTCCTCTCCCTTC
CTCTCTCCCCCCCTCCCTCCCTTACTCAGGTCCTCTTCTTCTTCGTCTCC
ATCCTTAAAGCCCTCTCCTACTCGTTGAACGAACCCTGCAAAGAAATGCT
CTACATTCCCACCTCCGACACCATCCGGTACCCTTACTCCCTCCCTCCCT
CCCTCCCTCCCTCCTTCCCTCTCCCTCGTTTTTCACCAGTGACTCACACG
CTGTTCTCCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTAGGTTCAAAGCCAAGGCATGGATCGACGTCTTTGGAGT
CCGCACTGCCAAAGCCATCGGCTCCATCGTCACCAACATGGCCAAAGTAC
TGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTTTGT
CTCCTCCCTCGCTTTTTGCGGTGCCTTTCCTCCCTCCCTCCCTCTCTCCC
TCCCTCCTTCTCTCTTTCCTTCTCTCCCTCCCTCCCTTCATTTGCACCGT
TGATTAATGACAGGATTACGCCTTCTCACCCCTCCCTCCCTCCTTCCCTC
CCTCCCCAGGACAACCCCGACGCCCTCGTCAAGATCGGATCCATCCCCTC
CTGGATAGTCTCCGTCTCCCTCCTCTTCATCTCCATCTACATGGGCCGAG
CCTTCGAAGCACTGCAGGTACCCCTCCCTCTCTCCCTCCCTCCCTCCCTT
CCTCCCCTTCAATTTCGCGTGTCTGGTCCTACCTGCACCATTCCCCCTTC
CCGCCTGATTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCACAGGAATCGGGCGACGTCATCGGACAAGCGAAAGTCCCTCTTTC
CCAAGCAGGGGAAGGGACTGCCGAAGGAGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGCCTCCTGGTCACCAAGAGGTCAAGGAGAAGAGGGG
GAGGGCATGCTGAGTCCGGGTGTGGAGGTGAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAGAAGCACCCCATTTTGCTGTCCTTGTTGC
CACGAGAAGTATCTCACCCTTCCTCCCCGCGCCCTCCCCCTCTTCCTCCC
TCAGGGCGGTATCTTCGATCCGTTCCTGGAGGCCGAGGTCGCAACGACGC
CTTCCAAAGGTCTGTGGGAAGGGGAGGAGGAGAGGGGGAGGGAGGGAGGG
AGGGAGGGAGGGGAGGTGGAGCTGGCGTTGTTTGGATTGGTGAGAGGGGA
AAGTGCGTATCATCCCAGCGGCGGGAGCAGTCCACGAGGAGGGGGAGGGG
GAGGGAGAGACGGAGGGAGGTCTCGCTCGCCATCGCCAGTGGGAAGTCGG
GTCATTTCGGTGTAGGGAGAGAGAGAGGGAGGAGGGAGAGAGGGAGAGAA
GGAGGAAAATAACTTTAAAACGAAGCACCAAATGCGTGTATCAGGCCA
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Coding sequence (CDS) from alignment at chr15:94163..96510+

>NO15G00300.1 ID=NO15G00300.1|Name=NO15G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr15:94163..96510+ (Nannochloropsis oceanica)
ATGGACGGACTCTCGGCAGAAGCCGCAGCAGCAGCCGCAGCTGCAGTAGC
AGTAGTAGATGAAGAGCAGGAGGAAGGCAAGCGATCACAGTCCTACCCAA
CCAGTGCTTCACTAAGCGCGAGGCGTGGTACTGCATCACTGCGGGTCGAT
GTCATCGGCCTCCAACGGCTTTCCAGGCACCCGCACGCCTCCGAACGTTT
CGCCCAACTGATGGGCCGTTTCGGCCAAGCCACCAACGCCCTCTCCTTTC
TCTTTTCCCTGCTAGGCACGAGCTACGTCGTTCGCACCCTTGGCTTGCCC
TCCACCCTTCGAATCTTCCCCTGCCTCCTCATCTTCGCCTCCATCGCGGC
TTTCTTCTACCCGTACCTCGGGGTCCTCTTCTTCTTCGTCTCCATCCTTA
AAGCCCTCTCCTACTCGTTGAACGAACCCTGCAAAGAAATGCTCTACATT
CCCACCTCCGACACCATCCGGTTCAAAGCCAAGGCATGGATCGACGTCTT
TGGAGTCCGCACTGCCAAAGCCATCGGCTCCATCGTCACCAACATGGCCA
AAGACAACCCCGACGCCCTCGTCAAGATCGGATCCATCCCCTCCTGGATA
GTCTCCGTCTCCCTCCTCTTCATCTCCATCTACATGGGCCGAGCCTTCGA
AGCACTGCAGGAATCGGGCGACGTCATCGGACAAGCGAAAGTCCCTCTTT
CCCAAGCAGGGGAAGGGACTGCCGAAGGAGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGCCTCCTGGTCACCAAGAGGTCAAGGAGAAGAGGG
GGAGGGCATGCTGAGTCCGGGTGTGGAGGGCGGTATCTTCGATCCGTTCC
TGGAGGCCGAGGTCGCAACGACGCCTTCCAAAGGTCTGTGGGAAGGGGAG
GAGGAGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGTGGAGCTGGC
GTTGTTTGGATTGGTGAGAGGGGAAAGTGCGTATCATCCCAGCGGCGGGA
GCAGTCCACGAGGAGGGGGAGGGGGAGGGAGAGACGGAGGGAGGTCTCGC
TCGCCATCGCCAGTGGGAAGTCGGGTCATTTCGGTGTAG
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Synonyms
Publications