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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr15 | genome | chr15:50665..54493 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G00200.1 vs.
Match: XP_008872212.1 (hypothetical protein H310_08294 [Aphanomyces invadans]; ETV98784.1 hypothetical protein H310_08294 [Aphanomyces invadans]) HSP 1 Score: 334.0 bits (855), Expect = 5.900e-88 Identity = 184/358 (51.40%), Postives = 228/358 (63.69%), Query Frame = 0
Query: 4 NWCTIESDPGVFTEVIENFGVEGVQVEEVYDLDSASFAPLEPVHGLVFLFKWKQEQDSRPVTDA----MAEPDLFFASQVITNACATQALLSILLNAPSDKVEIGPTLREFKSFTSQFPPDLKGLAISNSDTIRQVHNSFSRQEPFVIEETKATEKDD--VYHFIAYVPFNGKVYELDGLKPGPILLG-----EGEDWLSIARPAIQARIERYASSEIRFNLMAVIKNRTLVAQGKTERHQRRLDHIKARLELLETGGTAPPPTSDEDDPAFALATTADELRQQQAEEASTLDDLKRLIDDEKRKFTAWKEENVRRKHNYIPFVMGLLRVLAEKGKLKGMVDAANKKVADARAAASAA 351
+WCTIESDPGVFT +IE+ G +G+QVEE+Y LD ASF + PV+GL+FLFKW P T + PDLFFA QVITNACATQA+L+ILLN S V +G TL EFK+FT +FPPDLKGLAISNSDTIR VHNSF+R EPFVI+E K KDD VYHF+AYVPF GKVYELDGL GP+ LG E WL +A P IQ RIE+YASSEIRFNLM +++NR +AQ D+I A LE ++Q A + ++ I E +K WK+EN+RRKHNY+PFV+ LL+ LA+KG+L ++ A +K A+ A+ A
Sbjct: 2 SWCTIESDPGVFTSLIEDIGTKGIQVEELYSLDEASFQHISPVYGLIFLFKWSPVHAVAPTTGSGQHQFVSPDLFFAKQVITNACATQAILAILLNLESPHVVLGDTLSEFKAFTREFPPDLKGLAISNSDTIRTVHNSFARAEPFVIDEDKRPAKDDDEVYHFVAYVPFQGKVYELDGLSDGPVCLGDVASLEPTAWLKVATPVIQRRIEKYASSEIRFNLMGLVRNRVQLAQ----------DNIAALLE-----------------------------QEQTAAIVGQIQSWQQCIATEAQKRANWKKENLRRKHNYVPFVIKLLQTLAKKGQLDPLLQAQLEKATAAQQHATKA 320
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G00200.1 ID=NO15G00200.1|Name=NO15G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp
TGCTTCCTATGCTTCCGTAGCCTGCTCGAGGGTGGGGATGAGCGATGGTC
GGAATAAGTCTGCAGTGTGTGTGAGGAGGGAGCAAAGGAGCATCCATGCG
CGAATGCCCTTGGCTTTTGGCATAAACACAGAACGACACGAAATCACAAC
AAACACGCATACATAATCTACACACTTCTCATGCATGTATACAATTTCTG
AGGTTGTCCGGCTTAATATGCCTGGCCTGGCCCCTTTGATTCCTCTACCT
CTGTGTTTCCTCTCATCTCGCCGCCTGACATCGCCCACTCCAGCAAGCTG
CGGAAGCAGGAAGCATTCTTTTTTTTGCTTCATGCATGGGCAGGGGCTCC
GCAACCTGTGTGTGCCCTTTGTTGGTGGCGCGTTGTCGCCGTCTACCCTT
CATTTGTGAAACAAAAAGCTCCTATTTTTGTCGCGCTTCTTACGTTTAGA
GCTCTCAGCGCGCTTACCTCAGCAGCCATCATAATCATCAACCCTCCCTT
CCTCCTCTCATCCTCTCTTCACTTCACTACCCGTCGACACACCACCACCA
CCGCCAGCATGGCGGACAACTGGTGCACGATCGAGTCGGACCCTGGTGTT
TTTACCGAAGTTATCGAAAACTTTGGCGTGGAGGGCGTGCAGGTTGAAGA
GGTGTACGACCTTGACTCGGCGTCCTTTGCCCCCCTTGAGCCCGTCCACG
GCCTCGTTTTCCTCTTCAAGTGGAAGCAGGAGCAGGACTCCAGGCCTGTA
ACGGATGCCATGGCCGAGCCCGACTTGTTCTTCGCGTCCCAGGTCATCAC
GAACGCTTGCGCCACGCAAGCCCTCCTCTCCATCCTCCTCAACGCTCCGT
CCGATAAGGTGGAGATCGGTCCCACGCTACGAGAGTTCAAAAGCTTCACA
TCGCAATTCCCGCCCGATCTGAAGGGCCTGGCCATAAGTAACTCGGACAC
CATCCGACAGGTCCACAACTCCTTCTCGCGCCAAGAGCCCTTCGTCATCG
AGGAGACCAAGGCCACGGAGAAGGACGACGTCTACCACTTCATTGCTTAC
GTGCCATTCAACGGGAAGGTCTACGAGCTGGACGGCTTGAAGCCCGGGCC
CATATTGCTGGGGGAGGGCGAGGACTGGCTCTCCATCGCCCGCCCGGCCA
TCCAGGCCCGCATCGAGCGCTATGCCTCCTCCGAGATTCGCTTCAACCTG
ATGGCCGTCATCAAGAATCGGACTCTCGTCGCCCAAGGGAAGACAGAGCG
ACACCAACGCCGCCTAGACCACATCAAAGCCCGGCTTGAACTGCTCGAGA
CTGGCGGGACTGCTCCTCCTCCCACGTCCGACGAGGACGATCCGGCCTTC
GCCTTGGCCACGACGGCGGACGAGTTGCGGCAGCAACAGGCGGAGGAGGC
CAGCACCCTCGATGACCTCAAGCGGTTGATCGACGATGAGAAGCGCAAGT
TCACTGCCTGGAAGGAGGAGAATGTCCGACGCAAGCACAATTACATTCCC
TTCGTCATGGGTCTCCTGCGAGTGCTCGCCGAGAAGGGGAAGCTCAAGGG
CATGGTGGACGCGGCGAACAAGAAGGTAGCGGATGCCCGCGCGGCGGCAA
GTGCTGCCACCAGCAAGGCCAACTGATAGCCTCATCTGAAGGGGGCGGGG
GTGGAGGGAGGGAGGAAGGGAGCGAGAGGGGAAAAGCTGGAGGAGGAAGA
GAAGCAAGAAAAGAGTCATTGGGATGTCCGACTCAAAGAAGAAAAAGAAG
AGAGCCTGCGCTCAC back to topprotein sequence of NO15G00200.1 >NO15G00200.1-protein ID=NO15G00200.1-protein|Name=NO15G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MADNWCTIESDPGVFTEVIENFGVEGVQVEEVYDLDSASFAPLEPVHGLV
FLFKWKQEQDSRPVTDAMAEPDLFFASQVITNACATQALLSILLNAPSDK
VEIGPTLREFKSFTSQFPPDLKGLAISNSDTIRQVHNSFSRQEPFVIEET
KATEKDDVYHFIAYVPFNGKVYELDGLKPGPILLGEGEDWLSIARPAIQA
RIERYASSEIRFNLMAVIKNRTLVAQGKTERHQRRLDHIKARLELLETGG
TAPPPTSDEDDPAFALATTADELRQQQAEEASTLDDLKRLIDDEKRKFTA
WKEENVRRKHNYIPFVMGLLRVLAEKGKLKGMVDAANKKVADARAAASAA
TSKAN* back to topmRNA from alignment at chr15:50665..54493- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G00200.1 ID=NO15G00200.1|Name=NO15G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3829bp|location=Sequence derived from alignment at chr15:50665..54493- (Nannochloropsis oceanica)
TGCTTCCTATGCTTCCGTAGCCTGCTCGAGGGTGGGGATGAGCGATGGTC
GGAATAAGTCTGCAGTGTGTGTGAGGAGGGAGCAAAGGAGCATCCATGCG
CGAATGCCCTTGGCTTTTGGCATAAACACAGAACGACACGAAATCACAAC
AAACACGCATACATAATCTACACACTTCTCATGCATGTATACAATTTCTG
AGGTTGTCCGGCTTAATATGCCTGGCCTGGCCCCTTTGATTCCTCTACCT
CTGTGTTTCCTCTCATCTCGCCGCCTGACATCGCCCACTCCAGCAAGCTG
CGGAAGCAGGAAGCATTCTTTTTTTTGCTTCATGCATGGGCAGGGGCTCC
GCAACCTGTGTGTGCCCTTTGTTGGTGGCGCGTTGTCGCCGTCTACCCTT
CATTTGTGAAACAAAAAGCTCCTATTTTTGTCGCGCTTCTTACGTTTAGA
GCTCTCAGCGCGCTTACCTCAGCAGCCATCATAATCATCAACCCTCCCTT
CCTCCTCTCATCCTCTCTTCACTTCACTACCCGTCGACACACCACCACCA
CCGCCAGCATGGCGGACAACTGGTGCACGATCGAGTCGGACCCTGGTGTT
TTTACCGAAGTTATCGAAAACTTTGGCGTGGAGGGCGTGCAGGTGAGTCA
AAGGAGGGAGAGAGGACAGGGAGTGGGCACAAGCAGGGGGAGGAGCGATT
GGATAATTTGTATGTGGCATGAGAGTATTCGAAACCTCACGTGCTGCGAG
CATGAGCGCACTTTTGTTGCCAATGTTTGTCCGTGCTAACCCCATTCCCT
CCCTCCTCAGGTTGAAGAGGTGTACGACCTTGACTCGGCGTCCTTTGCCC
CCCTTGAGCCCGTCCACGGCCTCGTTTTCCTCTTCAAGTGGAAGCAGGTA
CGAAACCGAGTCATTTGGGGGGGAAGGGGTACGGATGAACGGGAGGAATG
GTAGCGTGGATGCGGTCGATGCATACCCAAGGTGGTTTTATAGACACCCT
TTCCCTCCCTCCCTCCCTCCCCAAGGAGCAGGACTCCAGGCCTGTAACGG
ATGCCATGGCCGAGCCCGACTTGTTCTTCGCGTCCCAGGTGAGGAGCAAG
GAAGAAACAGAGGGGGGACAAAGAGCGAGAACTTCCTATGTACAGATATA
TCCGGGGGTGTGTCTGCTGTCTATGTGGGGATGGTGCTGACACACTCCCT
CTTTGCCTCTGTCCTCTTGTCTTCTTTTGTTACCCTGTCGTCCCAGGTCA
TCACGAACGCTTGCGCCACGCAAGCCCTCCTCTCCATCCTCCTCAACGCT
CCGTCCGATAAGGTACGTCTTCCCTTTTCCCCCATCCCTCCCCATCCCTC
ATACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTTCCCA
GGTGGAGATCGGTCCCACGCTACGAGAGTTCAAAAGCTTCACATCGCAAT
TCCCGCCCGATCTGAAGGGCCTGGCCATAAGTAACTCGGACACCATCCGA
CAGGTAGGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCG
TTCTGACCGTTTCCTCATTTCTGTACGACACTGTCTTCAAGCCAAACCTA
CGCCTCCCTCCCTCCCTCCCTCCCTCCTCAGGTCCACAACTCCTTCTCGC
GCCAAGAGCCCTTCGTCATCGAGGAGACCAAGGCCACGGAGAAGGTGAGG
AGGGAGGGAGGGAGGGAGGGGAAGGAGGCGAGGGAAAGACATGTCCGCGC
TCTTGTCACTCGTTCATGTGCTTATCCCTCTCTTCACCCCTCCCTCCCTT
CCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCTC
CCAGGACGACGTCTACCACTTCATTGCTTACGTGCCATTCAACGGGAAGG
TCTACGAGCTGGACGGCTTGAAGCCCGGGCCCATATTGCTGGGTAGGGAG
GGAGGGAGGGAGGGAGGGAGAGAGAGAGAGAGGGGGGGGGTGGATCTGCT
CCAGGCGATAACTGGTAAACCTCTTTCACAGACACAGAATACGACGAAGA
CTCACTCACATGCACACACAGTGCGACAAACACTCACACACTCTCTCTCT
CACACACACCCCTCTACAGGGGAGGGCGAGGACTGGCTCTCCATCGCCCG
CCCGGCCATCCAGGCCCGCATCGAGCGGTACGTTGCATTCCCTTCCCTCC
CTATCCCCATCCTTCCTCTCTCTTTTCCTCCCCTCTCCTAGTCTCTCCTC
TCTTTCCCTCCCCTCTCCTAGTCTCTCCTCTCTTTCCTCTCCCCCTCCCT
CGCCTCCTTGCTACATCGTCGCATCAAGCGTACAAATCTTCCCCCATCAA
TACCATAATCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCTATGC
CTCCTCCGAGATTCGCTTCAACCTGATGGCCGTCATCAAGAATCGGACTC
TCGTCGCCCAAGGGAAGACAGAGCGACACCAACGCCGCCTAGACCACATC
AAAGCCCGGCTTGAACTGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTGC
CTCCCTCCTCCCTTCCTTTCTACTGCCTACCCTCCCTCCCTCCCTCCTTC
CCTCCCTCCCTCCTAGCTCGAGACAGGGGGATACTTCTCCTCTCTTCCAA
CAATTTTTCCTCTTCCCTGGCCTCACCACTCGTCCCTTCCTCCCGCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTGCCTAGCTCGAGACTGGCGGGACTGCTCCTCCTCCCACGTCCGAC
GAGGACGATCCGGCCTTCGCCTTGGCCACGACGGCGGACGAGTTGCGGCA
GCAACAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGAAGGGAATGAGAGAGGGAAGGGGGCGTCATGTAGATGATGCGTGGGAA
TACGGAAAGAAATAAATAGGACAGAATGTATTTAGGATTAGAAAGAGTAT
GAGAGACTGTATATAAGGATAAGAGTGTTATGGCGTTGACGTCCGCATTA
GTTTCCGAATGCTTTGAAAAGAGCATGTCACCGTCTCGACTCCATAACTT
CCCTTCCTCCCCCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCAGGCG
GAGGAGGCCAGCACCCTCGATGACCTCAAGCGGTTGATCGACGATGAGAA
GCGCAAGTTCACTGCCTGGAAGGTAGGTAGGGAGGGCGGGAAGGAGGGAT
GAAAGGAGGAGAGAAAGACACGTAACGATGGTTTGGTTGGCTTGTTAGCG
CCTGCATAGCAATGGTGTTCTCCACTCACACACCGCTCTTTTCCCCCTCC
TCCTTCCCTTCCTCCCTCTCTCCCACCCTGTCCCTTTCTTTGTACAGGAG
GAGAATGTCCGACGCAAGCACAATTACATTCCCTTCGTCATGGGTCTCCT
GCGAGTGCTCGCCGAGAAGGGGAAGCTCAAGTAAGTCGTGTCGGGGGAGG
GAGGGGGGTGCAGAGAGGGAGGGAGGAAGGACGGGAAGGAAGGAAGGGTG
GAGATAAGGCCTTAAGTTTCCCGCAGTAACGCCATTATTGTTTCACACGT
TTATGACACAGGGGCATGGTGGACGCGGCGAACAAGAAGGTAGCGGATGC
CCGCGCGGCGGCAAGTGCTGCCACCAGCAAGGCCAACTGATAGCCTCATC
TGAAGGGGGCGGGGGTGGAGGGAGGGAGGAAGGGAGCGAGAGGGGAAAAG
CTGGAGGAGGAAGAGAAGCAAGAAAAGAGTCATTGGGATGTCCGACTCAA
AGAAGAAAAAGAAGAGAGCCTGCGCTCAC back to topCoding sequence (CDS) from alignment at chr15:50665..54493- >NO15G00200.1 ID=NO15G00200.1|Name=NO15G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr15:50665..54493- (Nannochloropsis oceanica)
ATGGCGGACAACTGGTGCACGATCGAGTCGGACCCTGGTGTTTTTACCGA
AGTTATCGAAAACTTTGGCGTGGAGGGCGTGCAGGTTGAAGAGGTGTACG
ACCTTGACTCGGCGTCCTTTGCCCCCCTTGAGCCCGTCCACGGCCTCGTT
TTCCTCTTCAAGTGGAAGCAGGAGCAGGACTCCAGGCCTGTAACGGATGC
CATGGCCGAGCCCGACTTGTTCTTCGCGTCCCAGGTCATCACGAACGCTT
GCGCCACGCAAGCCCTCCTCTCCATCCTCCTCAACGCTCCGTCCGATAAG
GTGGAGATCGGTCCCACGCTACGAGAGTTCAAAAGCTTCACATCGCAATT
CCCGCCCGATCTGAAGGGCCTGGCCATAAGTAACTCGGACACCATCCGAC
AGGTCCACAACTCCTTCTCGCGCCAAGAGCCCTTCGTCATCGAGGAGACC
AAGGCCACGGAGAAGGACGACGTCTACCACTTCATTGCTTACGTGCCATT
CAACGGGAAGGTCTACGAGCTGGACGGCTTGAAGCCCGGGCCCATATTGC
TGGGGGAGGGCGAGGACTGGCTCTCCATCGCCCGCCCGGCCATCCAGGCC
CGCATCGAGCGCTATGCCTCCTCCGAGATTCGCTTCAACCTGATGGCCGT
CATCAAGAATCGGACTCTCGTCGCCCAAGGGAAGACAGAGCGACACCAAC
GCCGCCTAGACCACATCAAAGCCCGGCTTGAACTGCTCGAGACTGGCGGG
ACTGCTCCTCCTCCCACGTCCGACGAGGACGATCCGGCCTTCGCCTTGGC
CACGACGGCGGACGAGTTGCGGCAGCAACAGGCGGAGGAGGCCAGCACCC
TCGATGACCTCAAGCGGTTGATCGACGATGAGAAGCGCAAGTTCACTGCC
TGGAAGGAGGAGAATGTCCGACGCAAGCACAATTACATTCCCTTCGTCAT
GGGTCTCCTGCGAGTGCTCGCCGAGAAGGGGAAGCTCAAGGGCATGGTGG
ACGCGGCGAACAAGAAGGTAGCGGATGCCCGCGCGGCGGCAAGTGCTGCC
ACCAGCAAGGCCAACTGA back to top
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