NO15G00160.1, NO15G00160.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G00160.1
Unique Name	NO15G00160.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1637
Alignment location	chr15:36240..38687 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:36240..38687 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO15G00160.1 vs.
Match: EWM20821.1 (glycolate oxidase [Nannochloropsis gaditana])

HSP 1 Score: 529.3 bits (1362), Expect = 1.200e-146
Identity = 262/337 (77.74%), Postives = 296/337 (87.83%), Query Frame = 0

Query:    1 MGDVKEQQAAALEAATHQPLARLLSLDDVQAAARQRLPKPIYEYVASGSEDEQTLWENRQGFKRVLLCPKVGRDVSKVDMSLTLFKGTPHAQDASFPVFFSPAGVHCLMHPEGEAATARAAQKEGIIMGVSQHATKSMEEIALAAASAPSTYPSSNSFHSASSSLLPPSSPLWYQLYILHDRSLTAALVRRAQAAGYRALILTVDSPVFGFREADWRNGFVGLPEGMVLANYSTKRGYDDREKGGWDQNSEALLDRSSSFARDLPWLRSMTSLPIIVKGILSPEDAVAAAEAGCHGIIVSNHGGRQLDSCLSSIEALPGIADALRQQGFLIDSDLRA 338
            MGDVK QQAAA+EA+ HQPL RLLSLDDVQA AR+RLPK +YEYVASGS+DEQTLWENRQGFKR LLCP+VG DVSKVDMSLTLF+ T HAQ AS P+  SPAGVHCLMHP+GE AT RAAQ+E +IMGVSQHAT  ME++A AA + P+  P+S+   SA     PPS+PLWYQLYIL DRSLT +LVRRA+++GY+ALILTVDSPVFGFREADWRNGF GLPEGM+LANY TK  YDDR KGGWDQNSEALLDRSSSF RDLPWL S+TSLP++VKGI++PEDAVAAAEAGCHGIIVSNHGGRQLDSC+SSIEALPGIA+ALRQ+GFL+D+D RA
Sbjct:    1 MGDVKRQQAAAVEASIHQPLERLLSLDDVQAEARKRLPKALYEYVASGSDDEQTLWENRQGFKRHLLCPRVGVDVSKVDMSLTLFEDTDHAQHASLPIMISPAGVHCLMHPDGEIATVRAAQREQVIMGVSQHATTCMEDVARAAVTLPTPSPASSPPPSA-----PPSTPLWYQLYILRDRSLTLSLVRRAESSGYQALILTVDSPVFGFREADWRNGFAGLPEGMILANYPTKHAYDDRMKGGWDQNSEALLDRSSSFERDLPWLCSVTSLPVVVKGIVAPEDAVAAAEAGCHGIIVSNHGGRQLDSCISSIEALPGIAEALRQKGFLLDADRRA 332

The following BLAST results are available for this feature:

BLAST of NO15G00160.1 vs.

BLAST of NO15G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20821.1	1.200e-146	77.74	glycolate oxidase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G00160	NO15G00160	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00160.1	NO15G00160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00160.1.cds1	NO15G00160.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00160.1.cds2	NO15G00160.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00160.1.cds3	NO15G00160.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00160.1.cds4	NO15G00160.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00160.1.cds5	NO15G00160.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00160.1.cds6	NO15G00160.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:36240..38687-
coding sequence from alignment at chr15:36240..38687-

mRNA sequence

>NO15G00160.1 ID=NO15G00160.1|Name=NO15G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
ATGGGCGACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGGCAGCGACACA
TCAACCTCTGGCCCGCCTATTGTCGCTCGATGACGTCCAAGCAGCAGCCC
GTCAAAGGCTACCCAAACCCATCTATGAGTATGTCGCGTCAGGAAGTGAG
GACGAGCAGACTCTATGGGAGAATCGACAAGGCTTTAAGCGCGTGTTGCT
ATGCCCAAAGGTGGGGAGAGACGTGTCGAAGGTTGATATGAGTCTCACGC
TTTTTAAGGGTACCCCTCATGCACAAGACGCTTCTTTCCCCGTCTTTTTC
TCTCCCGCCGGGGTCCACTGCCTTATGCACCCGGAAGGAGAAGCTGCTAC
GGCTCGAGCCGCCCAAAAGGAAGGCATCATCATGGGGGTCTCGCAGCACG
CCACCAAAAGCATGGAGGAAATCGCCCTCGCTGCCGCGTCTGCACCTTCC
ACTTATCCGTCCTCAAACTCATTCCATTCCGCCTCTTCATCCCTTTTGCC
TCCTTCTTCACCATTGTGGTACCAGCTGTATATCCTGCACGACCGCTCCT
TGACTGCCGCACTAGTCCGTCGCGCCCAAGCCGCCGGTTATAGGGCGCTT
ATTCTCACAGTTGACTCCCCCGTATTTGGGTTTCGGGAAGCAGACTGGCG
CAATGGCTTTGTGGGCCTGCCAGAGGGGATGGTGCTCGCAAATTACTCTA
CGAAACGCGGCTATGATGATCGGGAGAAGGGAGGCTGGGATCAGAATTCG
GAAGCGCTCTTGGACCGAAGCAGCAGCTTCGCCCGGGACTTGCCTTGGCT
CCGCTCCATGACCTCATTGCCTATCATTGTTAAGGGCATCTTGTCCCCTG
AGGATGCCGTCGCAGCTGCAGAAGCAGGCTGCCACGGAATAATCGTCAGC
AACCATGGTGGGAGACAATTAGACTCCTGCCTTTCCTCTATTGAAGCTCT
TCCGGGCATTGCCGATGCCCTGCGCCAACAAGGGTTCCTAATCGACTCTG
ACCTTCGCGCAGGCGTTTCGCCTTTCCAATCACCAGACCGCAAAGTGATC
ACCCTTCTACTTGACAGCGGGGTCCGACGAGGGACAGACGTCCTGAAAGC
CCTCGCACTCGGGGCCAGCGCTGTGTTGGTAGGCAAACCTATCTTCTTCG
GATTGGCGGTGGGAGGAGAGGAAGGGGTGAGACACGTGCTGAATATTTTG
AGGAGGGAAACAGAAACCGCCATGGTGCTGTGTGGGTGCAAGAATCTGGG
GGATATCCGACAGGAGGTAGTGAGGGAGGGAGGGAGGGGGGCGTACATGA
GGCCGAGTAAATTGTAGGGTATTGAGAAAGGGGACGAAAGTGGGAGGAGA
GGATATTTGAGTGAAATTAGAGGCCGGGTATGACGAAGGGATTTGTGTTC
ATTTTCGCAGCTCCTTATGTGTGGTGTATGTGATAATGGTGCTGATTTCC
CAAGGTATGATATGCGCTCTTTTTCTCAATACCAGATCAGGGGCGCATCT
CCGCGATGATTTAGATTGATTGTGTGCTACAAATAGCTGGATAGGAAAGA
GTGAGGCAAAACACCATGACACACAAATGTTAAAGATCACATGAAGAAAA
GATACAAATAAGGCATGACCGAAAAGACACGACGCAG

protein sequence of NO15G00160.1

>NO15G00160.1-protein ID=NO15G00160.1-protein|Name=NO15G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MGDVKEQQAAALEAATHQPLARLLSLDDVQAAARQRLPKPIYEYVASGSE
DEQTLWENRQGFKRVLLCPKVGRDVSKVDMSLTLFKGTPHAQDASFPVFF
SPAGVHCLMHPEGEAATARAAQKEGIIMGVSQHATKSMEEIALAAASAPS
TYPSSNSFHSASSSLLPPSSPLWYQLYILHDRSLTAALVRRAQAAGYRAL
ILTVDSPVFGFREADWRNGFVGLPEGMVLANYSTKRGYDDREKGGWDQNS
EALLDRSSSFARDLPWLRSMTSLPIIVKGILSPEDAVAAAEAGCHGIIVS
NHGGRQLDSCLSSIEALPGIADALRQQGFLIDSDLRAGVSPFQSPDRKVI
TLLLDSGVRRGTDVLKALALGASAVLVGKPIFFGLAVGGEEGVRHVLNIL
RRETETAMVLCGCKNLGDIRQEVVREGGRGAYMRPSKL*

mRNA from alignment at chr15:36240..38687-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G00160.1 ID=NO15G00160.1|Name=NO15G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at chr15:36240..38687- (Nannochloropsis oceanica)
ATGGGCGACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGGCAGCGACACA
TCAACCTCTGGCCCGCCTATTGTCGCTCGATGACGTCCAAGCAGCAGCCC
GTCAAAGGCTACCCAAGTACGTGGAAAGAGTGGGTTAGGGTTAGGGAGGA
AGGATTGGAACTGAGAGAGGTCAGAAATAAAGAAATTGCTTAAAAGGCGG
GAGGGCGCGTAGGTAGCGGCTGCCATCAGACTCAGAGACCAAATCTTGAC
CTTGCTGCACATCCTTCTTCATTCACTCCCTCCCTGCCTCTCTTCGCAGA
CCCATCTATGAGTATGTCGCGTCAGGAAGTGAGGACGAGCAGACTCTATG
GGAGAATCGACAAGGCTTTAAGCGCGTGTTGCTATGCCCAAAGGTGGGGA
GAGACGTGTCGAAGGTTGATATGAGGTAAGGACCACACTCAAGGCACGCA
GCAGCAGAAGACAATCGATACGCATTCTGTCACAAGTTCTGCACCTCCTT
AGAAAAAGAAGTTCTCCTAGGGGAGAGGTTTGAGAATCAATACGAGCACT
CAGCGAGCGATTCAAGGGATTGATATGCAAATCTAGACCCAAGCTCTCAG
CCTTTACTCTCGCCCCTCTTTTCATCCCACATCCCACCCTTCCAGTCTCA
CGCTTTTTAAGGGTACCCCTCATGCACAAGACGCTTCTTTCCCCGTCTTT
TTCTCTCCCGCCGGGGTCCACTGCCTTATGCACCCGGAAGGAGAAGCTGC
TACGGCTCGAGCCGCCCAAAAGGAAGGCATCATCATGGGGGTCTCGCAGC
ACGCCACCAAAAGCATGGAGGAAATCGCCCTCGCTGCCGCGTCTGCACCT
TCCACTTATCCGTCCTCAAACTCATTCCATTCCGCCTCTTCATCCCTTTT
GCCTCCTTCTTCACCATTGTGGTACCAGCTGTATATCCTGCACGACCGCT
CCTTGACTGCCGCACTAGTCCGTCGCGCCCAAGCCGCCGGTTATAGGGCG
CTTATTCTCACAGTTGACTCCCCCGTATTTGGGTTTCGGGAAGCAGACTG
GCGCAATGGCTTTGTGGGCCTGCCAGAGGGGATGGTGCTCGCAAATTACT
CTACGAAACGCGGCTATGATGATCGGGAGAAGGGAGGCTGGGATCAGAAT
TCGGAAGGTGGGTGTCTTCGCTTTTATTATGCTCGTGTCTGTGTCTGCCT
TTTATTTTGCCTGCAAATCCCTCTCATCTTCCGCATAATTCTTGTTTTAT
CTTTTTTAAACTTCGACGTCATGGTATCGCACTCTCTGTACAAGCATCAG
AGTGCTTGGAACTTGGTTTTCGGCCTATTAACACAAAGATCCATCATGGT
CATTTTCCCCCAGCGCTCTTGGACCGAAGCAGCAGCTTCGCCCGGGACTT
GCCTTGGCTCCGCTCCATGACCTCATTGCCTATCATTGTTAAGGGCATCT
TGTCCCCTGAGGATGCCGTCGCAGCTGCAGAAGCAGGTACAATGGGACGA
ATGATCAAAGGACGGGTGCTCCGTAGATTTGAATGAGCGCTCTCTCACTC
GGATCACCTATTTTTTCACGTTTCCTTGAATCTTTCTCAGGCTGCCACGG
AATAATCGTCAGCAACCATGGTGGGAGACAATTAGACTCCTGCCTTTCCT
CTATTGAAGCTCTTCCGGGCATTGCCGATGCCCTGCGCCAACAAGGGTTC
CTAATCGACTCTGACCTTCGCGCAGGCGTTTCGCCTTTCCAATCACCAGA
CCGCAAAGGTGAGAATAAAAGCATTGCATACCTTCACCCATATCTTGACG
CATAATTAGACATTCTTCACACCCATAATATCCCTTTCCTTTTCTTCCTC
TTGAAGTGATCACCCTTCTACTTGACAGCGGGGTCCGACGAGGGACAGAC
GTCCTGAAAGCCCTCGCACTCGGGGCCAGCGCTGTGTTGGTAGGCAAACC
TATCTTCTTCGGATTGGCGGTGGGAGGAGAGGAAGGGGTGAGACACGTGC
TGAATATTTTGAGGAGGGAAACAGAAACCGCCATGGTGCTGTGTGGGTGC
AAGAATCTGGGGGATATCCGACAGGAGGTAGTGAGGGAGGGAGGGAGGGG
GGCGTACATGAGGCCGAGTAAATTGTAGGGTATTGAGAAAGGGGACGAAA
GTGGGAGGAGAGGATATTTGAGTGAAATTAGAGGCCGGGTATGACGAAGG
GATTTGTGTTCATTTTCGCAGCTCCTTATGTGTGGTGTATGTGATAATGG
TGCTGATTTCCCAAGGTATGATATGCGCTCTTTTTCTCAATACCAGATCA
GGGGCGCATCTCCGCGATGATTTAGATTGATTGTGTGCTACAAATAGCTG
GATAGGAAAGAGTGAGGCAAAACACCATGACACACAAATGTTAAAGATCA
CATGAAGAAAAGATACAAATAAGGCATGACCGAAAAGACACGACGCAG

Coding sequence (CDS) from alignment at chr15:36240..38687-

>NO15G00160.1 ID=NO15G00160.1|Name=NO15G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr15:36240..38687- (Nannochloropsis oceanica)
ATGGGCGACGTTAAGGAGCAGCAAGCAGCAGCGCTCGAGGCAGCGACACA
TCAACCTCTGGCCCGCCTATTGTCGCTCGATGACGTCCAAGCAGCAGCCC
GTCAAAGGCTACCCAAACCCATCTATGAGTATGTCGCGTCAGGAAGTGAG
GACGAGCAGACTCTATGGGAGAATCGACAAGGCTTTAAGCGCGTGTTGCT
ATGCCCAAAGGTGGGGAGAGACGTGTCGAAGGTTGATATGAGTCTCACGC
TTTTTAAGGGTACCCCTCATGCACAAGACGCTTCTTTCCCCGTCTTTTTC
TCTCCCGCCGGGGTCCACTGCCTTATGCACCCGGAAGGAGAAGCTGCTAC
GGCTCGAGCCGCCCAAAAGGAAGGCATCATCATGGGGGTCTCGCAGCACG
CCACCAAAAGCATGGAGGAAATCGCCCTCGCTGCCGCGTCTGCACCTTCC
ACTTATCCGTCCTCAAACTCATTCCATTCCGCCTCTTCATCCCTTTTGCC
TCCTTCTTCACCATTGTGGTACCAGCTGTATATCCTGCACGACCGCTCCT
TGACTGCCGCACTAGTCCGTCGCGCCCAAGCCGCCGGTTATAGGGCGCTT
ATTCTCACAGTTGACTCCCCCGTATTTGGGTTTCGGGAAGCAGACTGGCG
CAATGGCTTTGTGGGCCTGCCAGAGGGGATGGTGCTCGCAAATTACTCTA
CGAAACGCGGCTATGATGATCGGGAGAAGGGAGGCTGGGATCAGAATTCG
GAAGCGCTCTTGGACCGAAGCAGCAGCTTCGCCCGGGACTTGCCTTGGCT
CCGCTCCATGACCTCATTGCCTATCATTGTTAAGGGCATCTTGTCCCCTG
AGGATGCCGTCGCAGCTGCAGAAGCAGGCTGCCACGGAATAATCGTCAGC
AACCATGGTGGGAGACAATTAGACTCCTGCCTTTCCTCTATTGAAGCTCT
TCCGGGCATTGCCGATGCCCTGCGCCAACAAGGGTTCCTAATCGACTCTG
ACCTTCGCGCAGGCGTTTCGCCTTTCCAATCACCAGACCGCAAAGTGATC
ACCCTTCTACTTGACAGCGGGGTCCGACGAGGGACAGACGTCCTGAAAGC
CCTCGCACTCGGGGCCAGCGCTGTGTTGGTAGGCAAACCTATCTTCTTCG
GATTGGCGGTGGGAGGAGAGGAAGGGGTGAGACACGTGCTGAATATTTTG
AGGAGGGAAACAGAAACCGCCATGGTGCTGTGTGGGTGCAAGAATCTGGG
GGATATCCGACAGGAGGTAGTGAGGGAGGGAGGGAGGGGGGCGTACATGA
GGCCGAGTAAATTGTAG

Synonyms

Publications