NO14G03280.1, NO14G03280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G03280.1
Unique NameNO14G03280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr14:986618..988863 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:986618..988863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G03280.1 vs.
Match: XP_005854150.1 (hypothetical protein NGA_0198700 [Nannochloropsis gaditana CCMP526]; EKU22212.1 hypothetical protein NGA_0198700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 483.8 bits (1244), Expect = 3.700e-133
Identity = 230/256 (89.84%), Postives = 245/256 (95.70%), Query Frame = 0 
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGITSVAVGHPFDTIKTKMQAQEGFLKGSGMLSSFSTVLRTQGLPGLYKGALPPLLGSGIYRSTQFAVFEALYTKWDNEVGREELPRSHGVQVRVVGAAVAAATVRSLLECPIEFAKVARQTGQDWKLNQVYRGIGLQLGRTGGVMTTYFVTVDSIRRHHPDVFQGKLGQFLASAGAATFGFWVVWPLEVLKNQVQAGTPVGPRGKDATLQERVVALGKGGLGGLYRGILPGT 257
            MTHNEKRQHWLKEGAIGLGTGVLYG+TSVAVGHPFDTIKTKMQAQEGF+KG GM+ SFSTVL+TQGLPGLYKGALPPLLGSG+YRSTQFAVFEALYTKWDNEVGREE+P + GVQVRVVGAAVAAAT RSLLECPIEFAKVARQTGQDWKL QVYRG GLQLGRTGGVMTTYFVTVD+IRRHHP VF+ K+GQFLASAGAATFGFWVVWPLEVLKNQVQAGTPVGPRG++ATL +RV+ALG+GGL GLYRGILPGT
Sbjct:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKIGQFLASAGAATFGFWVVWPLEVLKNQVQAGTPVGPRGREATLVDRVLALGRGGLAGLYRGILPGT 256
The following BLAST results are available for this feature:
BLAST of NO14G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854150.13.700e-13389.84hypothetical protein NGA_0198700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G03280NO14G03280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G03280.1NO14G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G03280.1.cds1NO14G03280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03280.1.cds2NO14G03280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03280.1.cds3NO14G03280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03280.1.cds4NO14G03280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03280.1.cds5NO14G03280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03280.1.cds6NO14G03280.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03280.1.cds7NO14G03280.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03280.1.cds8NO14G03280.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G03280.1 ID=NO14G03280.1|Name=NO14G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
ATGACGCATAACGAGAAAAGACAGCACTGGTTGAAGGAAGGGGCGATTGG
CCTGGGGACCGGTGTCCTCTATGGCATCACGTCTGTCGCGGTGGGCCACC
CCTTTGATACCATCAAGACAAAAATGCAGGCACAAGAAGGCTTTTTAAAA
GGATCCGGAATGCTGTCCTCTTTCTCGACCGTCCTTAGGACACAGGGCTT
GCCAGGGTTGTACAAGGGCGCTCTTCCTCCGCTCCTAGGCAGTGGAATCT
ATCGCTCAACACAATTCGCAGTATTTGAGGCTCTTTATACAAAATGGGAC
AATGAGGTGGGCCGGGAAGAGCTTCCCCGCAGTCACGGGGTGCAGGTGCG
GGTGGTGGGAGCAGCTGTCGCAGCCGCCACAGTGCGTTCGCTGCTGGAGT
GTCCGATAGAGTTCGCGAAAGTGGCCCGACAGACGGGCCAGGACTGGAAA
CTCAACCAGGTCTACAGGGGCATAGGTTTACAACTAGGGCGCACAGGCGG
CGTTATGACCACCTACTTCGTCACTGTGGACTCCATCCGACGGCATCACC
CCGATGTCTTCCAAGGCAAGCTTGGACAATTTCTCGCCTCGGCCGGCGCG
GCCACTTTCGGCTTCTGGGTCGTATGGCCGCTAGAAGTACTCAAGAACCA
GGTCCAAGCCGGCACGCCAGTGGGCCCGCGAGGCAAAGACGCGACGCTCC
AGGAGAGGGTGGTGGCGCTGGGGAAAGGCGGGCTGGGAGGGCTCTACCGA
GGCATCTTGCCGGGCACCCTCCGATCGGTGGTCTCGAACGGCTTCAGCAT
GGTAGTCATGATAGAAGCACAAAAGTGGGTTACTCATCTAGGCCTTCGGT
AG
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protein sequence of NO14G03280.1

>NO14G03280.1-protein ID=NO14G03280.1-protein|Name=NO14G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MTHNEKRQHWLKEGAIGLGTGVLYGITSVAVGHPFDTIKTKMQAQEGFLK
GSGMLSSFSTVLRTQGLPGLYKGALPPLLGSGIYRSTQFAVFEALYTKWD
NEVGREELPRSHGVQVRVVGAAVAAATVRSLLECPIEFAKVARQTGQDWK
LNQVYRGIGLQLGRTGGVMTTYFVTVDSIRRHHPDVFQGKLGQFLASAGA
ATFGFWVVWPLEVLKNQVQAGTPVGPRGKDATLQERVVALGKGGLGGLYR
GILPGTLRSVVSNGFSMVVMIEAQKWVTHLGLR*
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mRNA from alignment at chr14:986618..988863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G03280.1 ID=NO14G03280.1|Name=NO14G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2246bp|location=Sequence derived from alignment at chr14:986618..988863- (Nannochloropsis oceanica)
ATGACGCATAACGAGAAAAGACAGCACTGGTTGAAGGAAGGGGCGATTGG
CCTGGGGACCGGTGTCCTCTATGGCATCACGGTGAGTGAGTGAAAGTAAT
CGATGGGATGAGCTGCTGAGGCTTGTTTGTTTGCATGAGAACAAGCAAGC
AGAGGTGAAGATGGCAAGTGTAAGCGCGTTTGATCTCGATCATTTTTTCT
CTTATTTTCAGTCCTGCATTTTCCTCATCTCCCCTTCCTCCTACAACTCC
AACTCTCCACGCCCAAGTCTGTCGCGGTGGGCCACCCCTTTGATACCATC
AAGACAAAAATGCAGGCACAAGAAGGCTTTTTAAAAGGATCCGGAATGCT
GTCCTCTTTCTCGACCGTCCTTAGGACACAGGGCTTGCCAGGGTTGTACA
AGGTGAAATACACAGGGGACATTGTCGGTTGGGGTTGCGTACTGGAGATG
GTGGCACGGAGTAAATGAGCAGAAAAGATAATGTGGAGACGCTGAGGCGT
GAATGCTACTTGATGCTGCTTACCTGGTTCATGTAATTGTACTCTTTTCT
GCAACATTTAAACCGTAGTCACATCAAAGCGGTGCTTTTGCAGTGTTATC
AATGCTCTTGCTCATCCTCCCTTTTCCTCCTCTTCCCTCCCCCTCTCACA
GGGCGCTCTTCCTCCGCTCCTAGGCAGTGGAATCTATCGCTCAACACAAT
TCGCAGTATTTGAGGCTCTTTATACAAAATGGGACAATGAGGTGGGTCGG
CACGGAGAAAGGGGGCTGAAGGGTGCGAAGGTGGAAAGAGGTCGAAGGAA
GGGAGAGTGGGAGAGCGAGAGGCCCGGAATTAATGCCGTAGAAAAGAAAG
CTACGCCTTTATGGAGCGGCTCACTTCCTCTCGCACTCACATTCAATGTC
TTCTTTGGATAGGTGGGCCGGGAAGAGCTTCCCCGCAGTCACGGGGTGCA
GGTGCGGGTGGTGGGAGCAGCTGTCGCAGCCGCCACAGTGCGTTCGCTGC
TGGAGTGTCCGATAGAGTTCGCGAAAGTGGCCCGACAGACGGGCCAGGAC
TGGAAACTCAACCAGGTCTACAGGTATGAGGGAGAAGAGCGGGGACGGCA
GAGGGAAGCCTGGGAAAGCCACCAGCGCATTCTCCGATCCCCAATATATT
GTTTTCCTCCGGTTCTTCCACCTCTCCTTTCTCACTCTCTCTCCTATCCC
CCTTTCCTCCTTAATCCCCGTCTCCATCGTTGTGATAGGGGCATAGGTTT
ACAACTAGGGCGCACAGGCGGCGTTATGACCACCTACTTCGTCACTGTGG
ACTCCATCCGGTGAGACCACGCACGACCTCCGTCCTCCCTCCCTCCCTCC
CTCCCTCCTTATATTTCTTCTTTCCTTTCCTTCCCTTTATTGTCTGGATG
GGATTTTTTCTTTGTCTTTTTTCCCTTACCTGCACCAGCCCTACTTTGAT
TTTCCTTGCATGTAAGACACCTCAATCCACTCACGCAGCGGCCACTCGTG
CCCCTCTCTCCCTCCCTCCCTCCCTTCTCCTCCCTCTCTCCCTCAGACGG
CATCACCCCGATGTCTTCCAAGGCAAGCTTGGACAATTTCTCGCCTCGGC
CGGCGCGGCCACTTTCGGCTTCTGGGTCGTATGGCCGCTAGAAGTACTCA
AGAACCAGGTGCATCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCTTTCCT
GCCTTTCTCCCTCTCTCCCTCCTTCCTACCCTCCTTTCTTCTCTCCCTGC
CTCCCTGCTTTTCATTTTTACCCACTTGGACACGCAAATGGGAAGAAGGA
AACGATGAGGCCTTAACAGCTCCTCCCTTCCACCCTCCCTTCCACCCTCC
CTCCCTAAGGTCCAAGCCGGCACGCCAGTGGGCCCGCGAGGCAAAGACGC
GACGCTCCAGGAGAGGGTGGTGGCGCTGGGGAAAGGCGGGCTGGGAGGGC
TCTACCGAGGCATCTTGCCGGGTAGGGGGGAGGGCGGGGAGGAGGGTGGT
TGACTCGGGATCGGACTGCGTTTTGGTGCACATGAGTAATCGGTCACGAG
TAATGAGTGAATAGATGTCCACGAAACGGCCCGTGTCACCTTGTTTTCGT
TTTAGCTTACCCTCCGCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCTCCT
CTTTAAGGCACCCTCCGATCGGTGGTCTCGAACGGCTTCAGCATGGTAGT
CATGATAGAAGCACAAAAGTGGGTTACTCATCTAGGCCTTCGGTAG
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Coding sequence (CDS) from alignment at chr14:986618..988863-

>NO14G03280.1 ID=NO14G03280.1|Name=NO14G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr14:986618..988863- (Nannochloropsis oceanica)
ATGACGCATAACGAGAAAAGACAGCACTGGTTGAAGGAAGGGGCGATTGG
CCTGGGGACCGGTGTCCTCTATGGCATCACGTCTGTCGCGGTGGGCCACC
CCTTTGATACCATCAAGACAAAAATGCAGGCACAAGAAGGCTTTTTAAAA
GGATCCGGAATGCTGTCCTCTTTCTCGACCGTCCTTAGGACACAGGGCTT
GCCAGGGTTGTACAAGGGCGCTCTTCCTCCGCTCCTAGGCAGTGGAATCT
ATCGCTCAACACAATTCGCAGTATTTGAGGCTCTTTATACAAAATGGGAC
AATGAGGTGGGCCGGGAAGAGCTTCCCCGCAGTCACGGGGTGCAGGTGCG
GGTGGTGGGAGCAGCTGTCGCAGCCGCCACAGTGCGTTCGCTGCTGGAGT
GTCCGATAGAGTTCGCGAAAGTGGCCCGACAGACGGGCCAGGACTGGAAA
CTCAACCAGGTCTACAGGGGCATAGGTTTACAACTAGGGCGCACAGGCGG
CGTTATGACCACCTACTTCGTCACTGTGGACTCCATCCGACGGCATCACC
CCGATGTCTTCCAAGGCAAGCTTGGACAATTTCTCGCCTCGGCCGGCGCG
GCCACTTTCGGCTTCTGGGTCGTATGGCCGCTAGAAGTACTCAAGAACCA
GGTCCAAGCCGGCACGCCAGTGGGCCCGCGAGGCAAAGACGCGACGCTCC
AGGAGAGGGTGGTGGCGCTGGGGAAAGGCGGGCTGGGAGGGCTCTACCGA
GGCATCTTGCCGGGCACCCTCCGATCGGTGGTCTCGAACGGCTTCAGCAT
GGTAGTCATGATAGAAGCACAAAAGTGGGTTACTCATCTAGGCCTTCGGT
AG
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Synonyms
Publications