NO14G03200.3, NO14G03200.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G03200.3
Unique NameNO14G03200.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1647
Alignment locationchr14:957845..959887 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:957845..959887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G03200.3 vs.
Match: EWM24485.1 (Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 9.000e-70
Identity = 135/200 (67.50%), Postives = 163/200 (81.50%), Query Frame = 0 
Query:   59 LSKNLPTIPTGVRSHALFGGAITFTLPASFANVSEIRQVPDNQEVFVDQSSDASLILELLELERGKEGLEAAKYFFCDLAEHNEAQAANIQFQADMSKTGVVPHLDAYPTYCLIGTQSISKFHTPSAAHQSVRIYLVNVRLQQTGTDLVLTLNLPPSAQAPAAAEFSQTLFIQGGPCPDPAVAALQEALTSLKVTNWGLF 259
            +++   +I   VRSHALFGGAIT +LPASF++ S+IRQVPDNQEVF+D +SDASLILELL+LER KEGLEAA YFF DLAEHN+AQ A IQ++ D+S T +VP+L AYPTY L+GTQ++SKFH   AA   VRIYLVNVRLQQTGTD++LTLNLP  AQAPAAA F+  +F++G  CPD  +AALQEAL SL + NWGLF
Sbjct:    1 MTRKEKSISEKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVKGNVCPDSGMAALQEALASLTIRNWGLF 200
The following BLAST results are available for this feature:
BLAST of NO14G03200.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24485.19.000e-7067.50Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G03200NO14G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G03200.3NO14G03200.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G03200.3.cds1NO14G03200.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03200.3.cds2NO14G03200.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03200.3.cds3NO14G03200.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03200.3.cds4NO14G03200.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G03200.3 ID=NO14G03200.3|Name=NO14G03200.3|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp
TGCGAGGTCAAAGTGACTATCTGTGGGTTTGATATGTAAGTCCGTGTGAG
TGCCGTGTGGATGTGTCAAGCGGAAGAGGGGATGTGTGGTAGGTGGCAGA
CGAACGAAGCGACCAAGTGAAGTAAATACGGCGAAAGACCCATCGCCAAT
ACGCCACCATCATGGCAACCTTCACAAGGTAGGGGCCTACTGCTCTGTCT
GCGCCAGTGACACACAGTGTATGTAGGCGTAATTGTCTAAGCTACGCGGG
GCAACCTTAGCTTGTTACTCTTCCTCTGGCCGAGAACACTGTTGCAACTG
AAGCCTTCAAGGCGTGGGTGCTCTCGTGCATCCTCGGGGAGGGCTTTCTG
GCGCGTTCCGAAGCATATCGACACTGTACCGTGCAGATATTGCATCCAGA
TGATCACATTTTATGCATTTCATCCATCTCAGACTTGTGCAGCTTTAGTT
GTCAAGTTCTATGCCCTTCCGGGCATCCAGGCGACCTCCTCCCCATCCTC
TTACCCACTTCCCACATCACTATATACCCGCAGGCACGAATCCCGTTCCT
CAGGCAAATAAGGAAACGGTTGCTGCTATGACCGGGGCAGAGGAAGGTAC
GTGCAAATGCGGATTATGCCGCTCGTATCATTTCCTCTCCAAGAACCTCC
CCACCATCCCCACAGGAGTCCGATCCCACGCCCTATTCGGCGGTGCCATC
ACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAGCGAGATTCGCCAGGT
ACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTTA
TCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGCCGCA
AAATACTTTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAGGCCGCGAA
CATTCAGTTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCCGCATTTAG
ATGCCTACCCAACCTACTGTCTTATCGGCACACAAAGTATCTCCAAGTTC
CACACGCCCAGTGCGGCACATCAATCTGTGCGTATCTATCTTGTCAATGT
GCGCTTGCAACAGACGGGCACGGACCTCGTTCTAACCCTCAACTTGCCCC
CATCGGCACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTCATC
CAGGGCGGGCCTTGCCCAGACCCGGCTGTGGCAGCATTACAGGAAGCACT
GACAAGCCTCAAGGTTACAAATTGGGGACTGTTTGTTTGAAAAATGAGCA
GCGGAAAGTATAAATCAGTCATCCGGGAAGAAATATAGACTGCCGTAGGA
AATAAAACATAAATGAAAGACACGCATTGAGTCCCCGCTCTTGAATTTTC
CTGATTTATTAAAATAGCAATATTTCCCCGGCAAATAGAATTGGATATAC
ATCGAGTGTGCCGATTTTTGTAGTCCCCTAGCACCTGAAATATATCCGGC
ATGTGCCGGCAAGGACCTGGTTACGCGTGTTGTAGGAGGTTTTGGTGGCG
ATCCCCCCACCCAAATCATCTTGACACAGTCTCCCCCACCTGACTCGCAA
ATGGTTATCGATTACCCGTTTAGATGTTTCGATGATTTTAGAGGCTTAAC
CATTGTCAATATCGAACTCACAAAAGAACCAATCCATAATCAATCAA
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protein sequence of NO14G03200.3

>NO14G03200.3-protein ID=NO14G03200.3-protein|Name=NO14G03200.3|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPFRASRRPPPHPLTHFPHHYIPAGTNPVPQANKETVAAMTGAEEGTCKC
GLCRSYHFLSKNLPTIPTGVRSHALFGGAITFTLPASFANVSEIRQVPDN
QEVFVDQSSDASLILELLELERGKEGLEAAKYFFCDLAEHNEAQAANIQF
QADMSKTGVVPHLDAYPTYCLIGTQSISKFHTPSAAHQSVRIYLVNVRLQ
QTGTDLVLTLNLPPSAQAPAAAEFSQTLFIQGGPCPDPAVAALQEALTSL
KVTNWGLFV*
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mRNA from alignment at chr14:957845..959887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G03200.3 ID=NO14G03200.3|Name=NO14G03200.3|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp|location=Sequence derived from alignment at chr14:957845..959887- (Nannochloropsis oceanica)
TGCGAGGTCAAAGTGACTATCTGTGGGTTTGATATGTAAGTCCGTGTGAG
TGCCGTGTGGATGTGTCAAGCGGAAGAGGGGATGTGTGGTAGGTGGCAGA
CGAACGAAGCGACCAAGTGAAGTAAATACGGCGAAAGACCCATCGCCAAT
ACGCCACCATCATGGCAACCTTCACAAGGTAGGGGCCTACTGCTCTGTCT
GCGCCAGTGACACACAGTGTATGTAGGCGTAATTGTCTAAGCTACGCGGG
GCAACCTTAGCTTGTTACTCTTCCTCTGGCCGAGAACACTGTTGCAACTG
AAGCCTTCAAGGCGTGGGTGCTCTCGTGCATCCTCGGGGAGGGCTTTCTG
GCGCGTTCCGAAGCATATCGACACTGTACCGTGCAGATATTGCATCCAGA
TGATCACATTTTATGCATTTCATCCATCTCAGACTTGTGCAGCTTTAGTT
GTCAAGTTCTATGCCCTTCCGGGCATCCAGGCGACCTCCTCCCCATCCTC
TTACCCACTTCCCACATCACTATATACCCGCAGGCACGAATCCCGTTCCT
CAGGCAAATAAGGAAACGGTTGCTGCTATGACCGGGGCAGAGGAAGGTAC
GTGCAAATGCGGATTATGCCGCTCGTATCATTTCCTCTCCAAGAACCTCC
CCACCATCCCCACAGGAGTCCGATCCCACGCCCTATTCGGCGGTGCCATC
ACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAGGTAAGTAAATTTTAC
CTGTTGGTTGTGGTCTTCGCACTTCGTGCTCTCTTCCTGGTACAATCTAA
GGGCTAGGGTGACAGACTCGTAGGCCCCTCCCTGACAGTCACACATAATA
TATACCATCCCTTTTGCAGCGAGATTCGCCAGGTACCAGACAATCAAGAA
GTCTTTGTAGACCAAAGTTCGGACGCGTCACTTATCCTAGAATTGCTGGA
GCTGGAGCGGGGCAAGGAGGGCCTTGAGGTATGTGTCTGTAAGGTACCGA
ACAGGGAGGGAGTGTAGTGGCGTATGCGTGATTTCACTGCCTGTGAGTCC
TCCACCTCGAGCCTCTACACAATTAATCCTTATCCTTTATTAAATAGGCC
GCAAAATACTTTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAGGCCGC
GAACATTCAGTTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCCGCATT
TAGATGCCTACCCAACCTACTGTCTTATCGGCACACAAAGTATCTCCAAG
TTCCACACGCCCAGTGCGGCACATCAATCTGTGCGTATCTATCTTGTCAA
TGTGCGCTTGCAACAGACGGGCACGGACCTCGTTCTAACCCTCAACTTGC
CCCCATCGGCACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTC
ATCCAGGTAGGTAAGTCTCTTGAGAGATGAAGGAATCGGGAGCGACATAT
CTGGTGGGCATATGTCAATCTTTACATACTTATATGGTACAGAAGCACAA
TTCAAAACCACAGGCTAAGTTTTATTTACATTCCCCACAAAATATTTAGG
GCGGGCCTTGCCCAGACCCGGCTGTGGCAGCATTACAGGAAGCACTGACA
AGCCTCAAGGTTACAAATTGGGGACTGTTTGTTTGAAAAATGAGCAGCGG
AAAGTATAAATCAGTCATCCGGGAAGAAATATAGACTGCCGTAGGAAATA
AAACATAAATGAAAGACACGCATTGAGTCCCCGCTCTTGAATTTTCCTGA
TTTATTAAAATAGCAATATTTCCCCGGCAAATAGAATTGGATATACATCG
AGTGTGCCGATTTTTGTAGTCCCCTAGCACCTGAAATATATCCGGCATGT
GCCGGCAAGGACCTGGTTACGCGTGTTGTAGGAGGTTTTGGTGGCGATCC
CCCCACCCAAATCATCTTGACACAGTCTCCCCCACCTGACTCGCAAATGG
TTATCGATTACCCGTTTAGATGTTTCGATGATTTTAGAGGCTTAACCATT
GTCAATATCGAACTCACAAAAGAACCAATCCATAATCAATCAA
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Coding sequence (CDS) from alignment at chr14:957845..959887-

>NO14G03200.3 ID=NO14G03200.3|Name=NO14G03200.3|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr14:957845..959887- (Nannochloropsis oceanica)
ATGCCCTTCCGGGCATCCAGGCGACCTCCTCCCCATCCTCTTACCCACTT
CCCACATCACTATATACCCGCAGGCACGAATCCCGTTCCTCAGGCAAATA
AGGAAACGGTTGCTGCTATGACCGGGGCAGAGGAAGGTACGTGCAAATGC
GGATTATGCCGCTCGTATCATTTCCTCTCCAAGAACCTCCCCACCATCCC
CACAGGAGTCCGATCCCACGCCCTATTCGGCGGTGCCATCACATTCACCC
TGCCCGCCTCGTTTGCAAACGTCAGCGAGATTCGCCAGGTACCAGACAAT
CAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTTATCCTAGAATT
GCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGCCGCAAAATACTTTT
TCTGTGACCTTGCCGAGCACAACGAAGCCCAGGCCGCGAACATTCAGTTT
CAAGCGGACATGAGCAAAACCGGGGTCGTGCCGCATTTAGATGCCTACCC
AACCTACTGTCTTATCGGCACACAAAGTATCTCCAAGTTCCACACGCCCA
GTGCGGCACATCAATCTGTGCGTATCTATCTTGTCAATGTGCGCTTGCAA
CAGACGGGCACGGACCTCGTTCTAACCCTCAACTTGCCCCCATCGGCACA
AGCACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTCATCCAGGGCGGGC
CTTGCCCAGACCCGGCTGTGGCAGCATTACAGGAAGCACTGACAAGCCTC
AAGGTTACAAATTGGGGACTGTTTGTTTGA
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Synonyms
Publications