Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr14 | genome | chr14:936345..939333 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G03140.4 vs.
Match: EWM24490.1 (short-chain dehydrogenase reductase [Nannochloropsis gaditana]) HSP 1 Score: 451.8 bits (1161), Expect = 1.700e-123 Identity = 222/262 (84.73%), Postives = 246/262 (93.89%), Query Frame = 0 Query: 1 MTCCLTENHSIPGFVLVAIMAVAAPTVMWCVTYFLPLLVMKVLGPQDLKKKYQAQWALVTGGSSGIGRAIVDRLALQGLNVCVVSIDDDLLKNTVKELKAAFPKQEFRAVGALFSPGQAYLPKIITATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVAVTHHFLQKMIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYDKTHKMEMLDMVRPCSSSP 263
M C LT++ ++P V + ++A+AAPTV+W TYFLPL+ MK+LGPQDLKKKY AQWALVTGGSSGIGRAIVDRLA+QGLNVCVVS+DDDLLKNTVKEL++AFPKQEFRAVG LF+PGQAYLPKII+ATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAV +THHFLQK+IQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFY+KTH+MEMLDMV+ + +P
Sbjct: 1 MGCRLTDSLALPMPVFLILLAIAAPTVVWSFTYFLPLIFMKLLGPQDLKKKYNAQWALVTGGSSGIGRAIVDRLAMQGLNVCVVSMDDDLLKNTVKELQSAFPKQEFRAVGVLFAPGQAYLPKIISATKDIDVQIIFNNAGYILTGFFDSQPLEKQLANVECNATAAVGITHHFLQKLIQKKLPGCIVFTSSVSGYMPSPFSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYEKTHQMEMLDMVKKTAVAP 262
The following BLAST results are available for this feature:
BLAST of NO14G03140.4 vs.
Analysis Date: 2017-10-25 ( Homology annotation for N. oceanica IMET1)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EWM24490.1 | 1.700e-123 | 84.73 | short-chain dehydrogenase reductase [Nannochlorops... | [more] |
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G03140.4 ID=NO14G03140.4|Name=NO14G03140.4|organism=Nannochloropsis oceanica|type=mRNA|length=2303bp
TTGTTTGGGGGAGAGTGGAGCCTGAGTGTGCGGGAGGGGAGGGAAAAAGG
AGATGAAGACGTAGCAGAGTGGATAGCGCGACATAAATACGGCTGGGTAT
CGGGACCCGGGTGGTTCTTCCTGTGCCTGGCTGGCGGAAAATACGAATAC
TTATAGCATGGAGAAACAATGAGTTAGGTATGCACACATAAATATTTGGT
GGCAGGATGGGTCAGTTAGGGAGAACTGGGTAAGAGCTGTGCTTGCACAT
AGGATAGGAATTAGAGGCTCCGGGGTCGTGGGCTAAAGAGGCAGTGACCC
CAACAGAGGCTTGGACCGGACACACTAATCGGGACGGCACGACGGTTGAA
AGGGAAGGCGACCATGTCCTAACCCGGTGGCCGGCAAATTGACACCAAAA
AAACTTCCAAATCCCAGCGATTTCAGGGTCGTTGCCACCTGTTGGGTCTA
TTTGGAGTAGTAGCGAGTGGCGTAGGTGAAATCGTTGCAAAAGAACAAGT
GGAAAACGTCTGCTTGCCCGTTGGGAGGGCAGAAAAGCTCAGGAACAATC
AAGAGATGACAAGCCAGCTTCGGTAAAGCATCTCACAACACTCACCAGAA
GATTCTTGCAAGCAATCCATCACACTCCAAGCCAGCGTCACGCCGGTTTG
GTCCTCTCAGCCCCACTTTACGCCGATCCCCTTCCCAATAGACAACGCAA
GCTTCTTCTTTCTTCATCCAGCCACCAACACCGATACTTTTCCCCACACC
ACCACACATACATACAGCCACGCACATTGAAACCATGACGTGCTGCCTCA
CTGAAAATCATTCCATTCCCGGGTTTGTACTCGTGGCTATCATGGCAGTC
GCGGCCCCCACCGTCATGTGGTGTGTAACTTACTTCCTACCCCTGCTCGT
CATGAAAGTGCTTGGCCCGCAGGACCTTAAAAAAAAGTACCAAGCTCAGT
GGGCCCTTGTCACGGGTGGATCCTCTGGCATCGGGCGTGCTATCGTCGAC
CGGCTGGCATTGCAAGGGTTGAACGTGTGTGTGGTTTCGATTGATGACGA
TTTGCTCAAGAACACGGTCAAGGAGCTCAAGGCGGCCTTCCCCAAACAAG
AGTTCCGCGCCGTCGGGGCCCTCTTTTCCCCCGGCCAGGCCTATCTTCCC
AAGATCATCACCGCCACCAAGGATATCGACGTACAGATAATCTTCAACAA
TGCCGGGTATATCCTCACGGGATTTTTCGACTCCCAGCCGTTGGAGAAAC
AGCTGGCCAACGTCGAGTGTAACGCCACCGCCGCGGTTGCCGTTACCCAC
CACTTTTTGCAGAAGATGATCCAGAAAAAGCTGCCCGGCTGCATCGTCTT
TACATCCTCCGTCTCGGGCTACATGCCCTCACCCTTCTCCTCCATGTACG
GGGCGACCAAGGCCTTTCTGTCCCAGTTTGCCGCCTGCTTGGCCGTGGAA
GTCAAGAGTCGAGGCATTGACGTCATGAGCGTTCACCCCTCGCCCGTCGC
CTCCCGCTTCTACGACAAGACGCACAAGATGGAGATGCTTGACATGGTAC
GTCCGTGCTCCTCCTCCCCTTTTGTCCCCCACCACCCGCCCTCCTTCCCT
TCCTCCTTTCTCGATGCTGCTTCATCCCTTTCGTTGTTTTGGTCCCCTCT
TCTTGTATGTGGACAAGGCCGTGTATATCACACTCTCGATGTCAGCCTTT
GCCAACCACAACACCGTGTCCTCTTTCCTTTTTTGTAGGTCAAGAAGACG
GCTGTAGCGCCCGATGAGCTTCCTTCCCAAATCTTCAGTGGCATCGGCCG
CTGCCATTGGTATGACCAGGTAAGCCATCTTCTTCTCTAAATTCTCTCCC
CTCCATCCCTCCTTTCTTTCCTGCTCATCTGCTCATCAGGTGTCTGTCCC
GTCTCCCTCCCTTCCCCTCTCCCTCTCTGCCTTCCTCTGTCTTTTTTTCT
TTCCTGTAGGGCGCGTTTGCTGTGCTCGTGAGGGCGGGGACTGCTCCCTT
GGCATATAACGCCATGGTTCAAGTTTTTGCGGGCATCGCACATTGGCTAC
CCGATTTCATCAAGTACAACAAGGAGCGATAGAGGGAGGGGAAGAAGGAA
AGGGAGGGATGGAGTAAGAAAGGAAAGAGCTTAGGTAATGGCGAGCGAAA
GAAACAAATTGAACTTTTCCAGGTGCCTTGCGTTTCATGTGTCGTGCGTG
GGAAGTAATGAGCGCATAAACACTGTACAAGAGCTCCTGCAATGCAAAAA
GTGCTCGATGTGATGTTTGTCGATTTTCGCTTAAACCAAACGCCCACCGG
CCG back to topprotein sequence of NO14G03140.4 >NO14G03140.4-protein ID=NO14G03140.4-protein|Name=NO14G03140.4|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MTCCLTENHSIPGFVLVAIMAVAAPTVMWCVTYFLPLLVMKVLGPQDLKK
KYQAQWALVTGGSSGIGRAIVDRLALQGLNVCVVSIDDDLLKNTVKELKA
AFPKQEFRAVGALFSPGQAYLPKIITATKDIDVQIIFNNAGYILTGFFDS
QPLEKQLANVECNATAAVAVTHHFLQKMIQKKLPGCIVFTSSVSGYMPSP
FSSMYGATKAFLSQFAACLAVEVKSRGIDVMSVHPSPVASRFYDKTHKME
MLDMVRPCSSSPFVPHHPPSFPSSFLDAASSLSLFWSPLLVCGQGRVYHT
LDVSLCQPQHRVLFPFL* back to topmRNA from alignment at chr14:936345..939333- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G03140.4 ID=NO14G03140.4|Name=NO14G03140.4|organism=Nannochloropsis oceanica|type=mRNA|length=2989bp|location=Sequence derived from alignment at chr14:936345..939333- (Nannochloropsis oceanica)
TTGTTTGGGGGAGAGTGGAGCCTGAGTGTGCGGGAGGGGAGGGAAAAAGG
AGATGAAGACGTAGCAGAGTGGATAGCGCGACATAAATACGGCTGGGTAT
CGGGACCCGGGTGGTTCTTCCTGTGCCTGGCTGGCGGAAAATACGAATAC
TTATAGCATGGAGAAACAATGAGTTAGGTATGCACACATAAATATTTGGT
GGCAGGATGGGTCAGTTAGGGAGAACTGGGTAAGAGCTGTGCTTGCACAT
AGGATAGGAATTAGAGGCTCCGGGGTCGTGGGCTAAAGAGGCAGTGACCC
CAACAGAGGCTTGGACCGGACACACTAATCGGGACGGCACGACGGTTGAA
AGGGAAGGCGACCATGTCCTAACCCGGTGGCCGGCAAATTGACACCAAAA
AAACTTCCAAATCCCAGCGATTTCAGGGTCGTTGCCACCTGTTGGGTCTA
TTTGGAGTAGTAGCGAGTGGCGTAGGTGAAATCGTTGCAAAAGAACAAGT
GGAAAACGTCTGCTTGCCCGTTGGGAGGGCAGAAAAGCTCAGGAACAATC
AAGAGATGACAAGCCAGCTTCGGTAAAGCATCTCACAACACTCACCAGAA
GATTCTTGCAAGCAATCCATCACACTCCAAGCCAGCGTCACGCCGGTTTG
GTCCTCTCAGCCCCACTTTACGCCGATCCCCTTCCCAATAGACAACGCAA
GCTTCTTCTTTCTTCATCCAGCCACCAACACCGATACTTTTCCCCACACC
ACCACACATACATACAGCCACGCACATTGAAACCATGACGTGCTGCCTCA
CTGAAAATCATTCCATTCCCGGGTTTGTACTCGTGGCTATCATGGCAGTC
GCGGCCCCCACCGTCATGTGGTGTGTAACTTACTTCCTACCCCTGCTCGT
CATGAAAGTGCTTGGCCCGCAGGACCTTAAAAAAAAGTACCAAGCTCAGT
GGGCCCTTGTCACGGGTGGATCCTCTGGCATCGGGCGTGCTATCGTCGAC
CGGCTGGCATTGCAAGGGTTGAACGTGTGTGTGGTTTCGATTGATGACGA
TTTGCTCAAGAACACGGTCAAGGAGCTCAAGGCGGCCTTCCCCAAACAAG
TAGGTGATTTGCGTGTACCATAGACGAGAAGCCAGGGAGCAAAGGAAAGG
GGTAGAGAAAAAGGAATGTTGGCGATTGATTACTGTGCAAATCTGATTTG
TGCCAATGTTGACTCTCCCTCCTTCCCTCCTTCCCTCTATCCCTCCCCGC
CCTTGAAACACAACAGGAGTTCCGCGCCGTCGGGGCCCTCTTTTCCCCCG
GCCAGGCCTATCTTCCCAAGATCATCACCGCCACCAAGGATATCGACGTA
CAGATAATCTTCAACAATGCCGGGTGGGTGGCAATCACTTTCTCTCGCCC
TTCGAATCCTCTCCTGCCATCTTTCCTTCCCCTTTCTGCCCTCATAGGAA
GTTCACGGCCTGTCTCTTGCCGACCTCCCCTCCCCTACTCTTTCCCTATC
TTCTCTCAGGTATATCCTCACGGGATTTTTCGACTCCCAGCCGTTGGAGA
AACAGCTGGCCAACGTCGAGTGTAACGCCACCGCCGCGGTTGCCGTTACC
CACCACTTTTTGCAGAAGATGATCCAGGTATACTCCCTCCCTCCCTCCCT
TGCTTCCTCCCTCCTCCCTTTATCAGACAGACGCATGCAATAACATTTTT
GAGTATATTGCTCATCCCTTCCCCTTTCTTCTGCCGTTTTAACCATATTT
TTCTCAGAAAAAGCTGCCCGGCTGCATCGTCTTTACATCCTCCGTCTCGG
GCTACATGCCCTCACCCTTCTCCTCCATGTACGTACTCCGATTCCTTCTC
TCCTTCCCTCCTTCCTGCCCCTCCCTCTCTTCTCCTCCTCCCCCCTCTCC
TTTCCTCACACACTCTCTCTGGATCCTTTTCCAGGTACGGGGCGACCAAG
GCCTTTCTGTCCCAGTTTGCCGCCTGCTTGGCCGTGGAAGTCAAGAGTCG
AGGTACATCTGCTCTGCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
TCCTCCCTTCCTCCCTCCTTTCCTACCACCACCAATCCCTCTCTCAGCCA
GACCACTCCTCCTCTCACTACTTCCTCTCACTCCGCCTCTCCTCTCTAGG
CATTGACGTCATGAGCGTTCACCCCTCGCCCGTCGCCTCCCGCTTCTACG
ACAAGACGCACAAGATGGAGATGCTTGACATGGTACGTCCGTGCTCCTCC
TCCCCTTTTGTCCCCCACCACCCGCCCTCCTTCCCTTCCTCCTTTCTCGA
TGCTGCTTCATCCCTTTCGTTGTTTTGGTCCCCTCTTCTTGTATGTGGAC
AAGGCCGTGTATATCACACTCTCGATGTCAGCCTTTGCCAACCACAACAC
CGTGTCCTCTTTCCTTTTTTGTAGGTCAAGAAGACGGCTGTAGCGCCCGA
TGAGCTTCCTTCCCAAATCTTCAGTGGCATCGGCCGCTGCCATTGGTATG
ACCAGGTAAGCCATCTTCTTCTCTAAATTCTCTCCCCTCCATCCCTCCTT
TCTTTCCTGCTCATCTGCTCATCAGGTGTCTGTCCCGTCTCCCTCCCTTC
CCCTCTCCCTCTCTGCCTTCCTCTGTCTTTTTTTCTTTCCTGTAGGGCGC
GTTTGCTGTGCTCGTGAGGGCGGGGACTGCTCCCTTGGCATATAACGCCA
TGGTTCAAGTTTTTGCGGGCATCGCACATTGGCTACCCGATTTCATCAAG
TACAACAAGGAGCGATAGAGGGAGGGGAAGAAGGAAAGGGAGGGATGGAG
TAAGAAAGGAAAGAGCTTAGGTAATGGCGAGCGAAAGAAACAAATTGAAC
TTTTCCAGGTGCCTTGCGTTTCATGTGTCGTGCGTGGGAAGTAATGAGCG
CATAAACACTGTACAAGAGCTCCTGCAATGCAAAAAGTGCTCGATGTGAT
GTTTGTCGATTTTCGCTTAAACCAAACGCCCACCGGCCG back to topCoding sequence (CDS) from alignment at chr14:936345..939333- >NO14G03140.4 ID=NO14G03140.4|Name=NO14G03140.4|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr14:936345..939333- (Nannochloropsis oceanica)
ATGACGTGCTGCCTCACTGAAAATCATTCCATTCCCGGGTTTGTACTCGT
GGCTATCATGGCAGTCGCGGCCCCCACCGTCATGTGGTGTGTAACTTACT
TCCTACCCCTGCTCGTCATGAAAGTGCTTGGCCCGCAGGACCTTAAAAAA
AAGTACCAAGCTCAGTGGGCCCTTGTCACGGGTGGATCCTCTGGCATCGG
GCGTGCTATCGTCGACCGGCTGGCATTGCAAGGGTTGAACGTGTGTGTGG
TTTCGATTGATGACGATTTGCTCAAGAACACGGTCAAGGAGCTCAAGGCG
GCCTTCCCCAAACAAGAGTTCCGCGCCGTCGGGGCCCTCTTTTCCCCCGG
CCAGGCCTATCTTCCCAAGATCATCACCGCCACCAAGGATATCGACGTAC
AGATAATCTTCAACAATGCCGGGTATATCCTCACGGGATTTTTCGACTCC
CAGCCGTTGGAGAAACAGCTGGCCAACGTCGAGTGTAACGCCACCGCCGC
GGTTGCCGTTACCCACCACTTTTTGCAGAAGATGATCCAGAAAAAGCTGC
CCGGCTGCATCGTCTTTACATCCTCCGTCTCGGGCTACATGCCCTCACCC
TTCTCCTCCATGTACGGGGCGACCAAGGCCTTTCTGTCCCAGTTTGCCGC
CTGCTTGGCCGTGGAAGTCAAGAGTCGAGGCATTGACGTCATGAGCGTTC
ACCCCTCGCCCGTCGCCTCCCGCTTCTACGACAAGACGCACAAGATGGAG
ATGCTTGACATGGTACGTCCGTGCTCCTCCTCCCCTTTTGTCCCCCACCA
CCCGCCCTCCTTCCCTTCCTCCTTTCTCGATGCTGCTTCATCCCTTTCGT
TGTTTTGGTCCCCTCTTCTTGTATGTGGACAAGGCCGTGTATATCACACT
CTCGATGTCAGCCTTTGCCAACCACAACACCGTGTCCTCTTTCCTTTTTT
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