NO14G03040.1, NO14G03040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G03040.1
Unique NameNO14G03040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length999
Alignment locationchr14:897564..898770 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:897564..898770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G03040.1 vs.
Match: EWM24503.1 (PAP/25A-associated [Nannochloropsis gaditana])

HSP 1 Score: 253.1 bits (645), Expect = 1.200e-63
Identity = 153/313 (48.88%), Postives = 195/313 (62.30%), Query Frame = 0 
Query:    1 MKRGGEGWWYRDIIAIHRARVPIVKFVDRMIPTGGGNGGNGGNGGNGGGGGGGGGGGGGRGGEEEGIQCDMCINNVTAIYNTGLIFTYLKCDDRLRPLIFLVKAWARAHNLNEARFGSLSSYAYSLLCINYMQLLSLLPSLQDPSLLPPLPHQRVYCLGLDVTYCGDVTAAMASLPPSPYASLTLAELLRGFFYFFGFVFNPTRSVVSVRVGGLLEKEEVEGEGGGGEGKGRRK--RVLWRMAIEDPFECYGSNKVHDLGDVMKEAMQKKMLEGFREAYRVMSQEDGGEGGRRDRGLFRERGRGQEVNGKGRG 312
            M  G E   Y+ +  +H  RVPIV F D      G      G  G  GGG                 QCD+CINN+ A+YNT L+++YL+CDDR+RPLI LVKAW R H  N A  G  SSYA SLLCI+Y+Q L LLP LQ PSLLPP P  R YC G DV+YC D+TAA A+  P   +S  L+ L+RGFF+++G+ FNP R+VVS+R   L++K +V  E GG  G GRRK  +VLWRMA+EDPFEC GS K HDLGDV+K   QK ML+GFR+AY+ +S+   GE    D+  ++    G++  G  +G
Sbjct:  100 MDNGKERARYQILRTLHTVRVPIVTFKDM-----GDKRKQAGKAGKEGGGAW---------------QCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAE-GGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGE-RMEDKKRWKALFLGKKEAGAAKG 390
The following BLAST results are available for this feature:
BLAST of NO14G03040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24503.11.200e-6348.88PAP/25A-associated [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G03040NO14G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G03040.1NO14G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G03040.1.cds1NO14G03040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03040.1.cds2NO14G03040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G03040.1 ID=NO14G03040.1|Name=NO14G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ATGAAGAGAGGGGGGGAAGGATGGTGGTATAGGGATATCATTGCTATCCA
TCGGGCGCGGGTTCCGATTGTCAAGTTTGTGGACCGAATGATACCGACGG
GAGGAGGAAATGGAGGAAATGGAGGAAATGGAGGAAATGGAGGAGGAGGA
GGTGGTGGGGGTGGAGGAGGAGGAGGAAGAGGAGGGGAAGAGGAAGGGAT
ACAGTGTGACATGTGCATCAACAATGTGACGGCCATATACAACACAGGGC
TCATTTTTACTTATCTCAAGTGTGACGACCGCCTTCGTCCGCTAATCTTC
CTTGTCAAGGCTTGGGCCCGAGCCCATAATTTAAACGAAGCAAGATTCGG
CTCCCTGTCCTCCTACGCCTACTCCCTCCTCTGCATCAACTACATGCAGC
TCCTCTCCCTCCTCCCCTCCCTCCAGGACCCATCCCTCCTTCCCCCCCTC
CCTCACCAGCGAGTGTACTGTCTAGGGCTGGACGTAACGTATTGCGGGGA
CGTCACGGCAGCCATGGCCTCCCTCCCTCCCTCCCCCTACGCCTCCCTCA
CTCTCGCGGAGTTGCTCCGAGGCTTTTTTTATTTCTTTGGGTTTGTATTT
AATCCTACCCGTAGCGTGGTCTCTGTGCGGGTGGGAGGGCTGCTGGAAAA
GGAGGAGGTGGAGGGGGAGGGAGGTGGAGGGGAAGGGAAGGGAAGGAGGA
AAAGAGTGTTATGGAGGATGGCCATTGAGGATCCGTTCGAGTGTTATGGA
AGTAATAAAGTGCACGACTTGGGAGACGTTATGAAGGAAGCGATGCAGAA
GAAAATGCTGGAGGGCTTTCGAGAGGCGTACAGGGTGATGAGTCAGGAGG
ATGGGGGGGAAGGAGGGAGGAGGGACAGGGGGTTGTTTAGGGAGAGGGGC
AGGGGACAGGAGGTGAATGGTAAGGGAAGAGGAAGGGGGAGGAGGGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGCGGAAAGGCAAGAGGGGAGGGATAA
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protein sequence of NO14G03040.1

>NO14G03040.1-protein ID=NO14G03040.1-protein|Name=NO14G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MKRGGEGWWYRDIIAIHRARVPIVKFVDRMIPTGGGNGGNGGNGGNGGGG
GGGGGGGGGRGGEEEGIQCDMCINNVTAIYNTGLIFTYLKCDDRLRPLIF
LVKAWARAHNLNEARFGSLSSYAYSLLCINYMQLLSLLPSLQDPSLLPPL
PHQRVYCLGLDVTYCGDVTAAMASLPPSPYASLTLAELLRGFFYFFGFVF
NPTRSVVSVRVGGLLEKEEVEGEGGGGEGKGRRKRVLWRMAIEDPFECYG
SNKVHDLGDVMKEAMQKKMLEGFREAYRVMSQEDGGEGGRRDRGLFRERG
RGQEVNGKGRGRGRRGGGGGGGGGGGKARGEG*
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mRNA from alignment at chr14:897564..898770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G03040.1 ID=NO14G03040.1|Name=NO14G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp|location=Sequence derived from alignment at chr14:897564..898770- (Nannochloropsis oceanica)
ATGAAGAGAGGGGGGGAAGGATGGTGGTATAGGGATATCATTGCTATCCA
TCGGGCGCGGGTTCCGATTGTCAAGTTTGTGGACCGAATGATACCGACGG
GAGGAGGAAATGGAGGAAATGGAGGAAATGGAGGAAATGGAGGAGGAGGA
GGTGGTGGGGGTGGAGGAGGAGGAGGAAGAGGAGGGGAAGAGGAAGGGAT
ACAGTGTGACATGTGCATCAACAATGTGACGGCCATATACAACACAGGTG
AGTCCAATGAGACATTTTAAAGATTTGGTAGATTAATAAATTTATTCTCT
TTTACTTTTACTTCCCTTCCTACTCACTGCTTTAATTGATAATTGATAAT
ACCTACATACTTAATACTTTTAAACTGTAACACCGTGTACGGCCTTCCCT
TCCTACGTTCCTCATCCTCCCTCCTTCCCTCCCTCCCACCATCCCCCTAC
ACCAGGGCTCATTTTTACTTATCTCAAGTGTGACGACCGCCTTCGTCCGC
TAATCTTCCTTGTCAAGGCTTGGGCCCGAGCCCATAATTTAAACGAAGCA
AGATTCGGCTCCCTGTCCTCCTACGCCTACTCCCTCCTCTGCATCAACTA
CATGCAGCTCCTCTCCCTCCTCCCCTCCCTCCAGGACCCATCCCTCCTTC
CCCCCCTCCCTCACCAGCGAGTGTACTGTCTAGGGCTGGACGTAACGTAT
TGCGGGGACGTCACGGCAGCCATGGCCTCCCTCCCTCCCTCCCCCTACGC
CTCCCTCACTCTCGCGGAGTTGCTCCGAGGCTTTTTTTATTTCTTTGGGT
TTGTATTTAATCCTACCCGTAGCGTGGTCTCTGTGCGGGTGGGAGGGCTG
CTGGAAAAGGAGGAGGTGGAGGGGGAGGGAGGTGGAGGGGAAGGGAAGGG
AAGGAGGAAAAGAGTGTTATGGAGGATGGCCATTGAGGATCCGTTCGAGT
GTTATGGAAGTAATAAAGTGCACGACTTGGGAGACGTTATGAAGGAAGCG
ATGCAGAAGAAAATGCTGGAGGGCTTTCGAGAGGCGTACAGGGTGATGAG
TCAGGAGGATGGGGGGGAAGGAGGGAGGAGGGACAGGGGGTTGTTTAGGG
AGAGGGGCAGGGGACAGGAGGTGAATGGTAAGGGAAGAGGAAGGGGGAGG
AGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAAAGGCAAGAGGGGA
GGGATAA
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Coding sequence (CDS) from alignment at chr14:897564..898770-

>NO14G03040.1 ID=NO14G03040.1|Name=NO14G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr14:897564..898770- (Nannochloropsis oceanica)
ATGAAGAGAGGGGGGGAAGGATGGTGGTATAGGGATATCATTGCTATCCA
TCGGGCGCGGGTTCCGATTGTCAAGTTTGTGGACCGAATGATACCGACGG
GAGGAGGAAATGGAGGAAATGGAGGAAATGGAGGAAATGGAGGAGGAGGA
GGTGGTGGGGGTGGAGGAGGAGGAGGAAGAGGAGGGGAAGAGGAAGGGAT
ACAGTGTGACATGTGCATCAACAATGTGACGGCCATATACAACACAGGGC
TCATTTTTACTTATCTCAAGTGTGACGACCGCCTTCGTCCGCTAATCTTC
CTTGTCAAGGCTTGGGCCCGAGCCCATAATTTAAACGAAGCAAGATTCGG
CTCCCTGTCCTCCTACGCCTACTCCCTCCTCTGCATCAACTACATGCAGC
TCCTCTCCCTCCTCCCCTCCCTCCAGGACCCATCCCTCCTTCCCCCCCTC
CCTCACCAGCGAGTGTACTGTCTAGGGCTGGACGTAACGTATTGCGGGGA
CGTCACGGCAGCCATGGCCTCCCTCCCTCCCTCCCCCTACGCCTCCCTCA
CTCTCGCGGAGTTGCTCCGAGGCTTTTTTTATTTCTTTGGGTTTGTATTT
AATCCTACCCGTAGCGTGGTCTCTGTGCGGGTGGGAGGGCTGCTGGAAAA
GGAGGAGGTGGAGGGGGAGGGAGGTGGAGGGGAAGGGAAGGGAAGGAGGA
AAAGAGTGTTATGGAGGATGGCCATTGAGGATCCGTTCGAGTGTTATGGA
AGTAATAAAGTGCACGACTTGGGAGACGTTATGAAGGAAGCGATGCAGAA
GAAAATGCTGGAGGGCTTTCGAGAGGCGTACAGGGTGATGAGTCAGGAGG
ATGGGGGGGAAGGAGGGAGGAGGGACAGGGGGTTGTTTAGGGAGAGGGGC
AGGGGACAGGAGGTGAATGGTAAGGGAAGAGGAAGGGGGAGGAGGGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGCGGAAAGGCAAGAGGGGAGGGATAA
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Synonyms
Publications