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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:890555..894570 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G03010.1 vs.
Match: XP_024361050.1 (RHOMBOID-like protein 12, mitochondrial isoform X1 [Physcomitrella patens]) HSP 1 Score: 151.4 bits (381), Expect = 4.900e-33 Identity = 106/268 (39.55%), Postives = 150/268 (55.97%), Query Frame = 0
Query: 61 PLLPSSSLAAAVSVSTPSFLGRATRELARWRRHFGNSARRTYTSYHRGGGRPPFRLPEGNA--IVYGLIGANILVFGAWTYASQSRRLTRFMVEHFTVSAVGVLEQGRFHTLFTAMFSHQSFTHLLVNCVTLYFFGAEAAVLLGARRFVNLYFAGGLASSLGCVLW-PFVAPKL-HIPASYRVSKHTV-ALGASGAVNALVAWSIFMFPTRMVYLYLVLPVPAALLGVLFLAKDLSGLYQGGSGEANAGHLGGAVVGAAYYFVTRGRY 324
P+L ++ A ++ P L+RW ++ R RG G GNA +V+GL+G N+ VFG W +A + +FM +F VS VL GR HT+ T+ FS SF HL++N + LYFFG E A + G R +NLY GG+A S+G +++ FV P L +IP +++T ALGASGAVNA+V I +FP+R + + +PVPAAL GV + D+ GS A+AGHLGGA+VGA + R R+
Sbjct: 81 PMLLQAAKAGQQGIAVPV----RNFSLSRW-----SNIVRAKLGSSRGYGSGYGGYAGGNAQRVVWGLVGVNLAVFGLWQFADR-----KFMTNNFMVSVNSVLS-GRIHTIVTSAFSQASFNHLIMNMLGLYFFGTEVAQIFGGRWLLNLYLVGGIAGSIGHLVYCAFVIPWLENIPQHRFNARYTPSALGASGAVNAIVLLHILLFPSRTIMVNFFIPVPAALFGVYLIGSDVWQARNEGSRTAHAGHLGGALVGALAWLRVRRRW 333
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G03010.1 ID=NO14G03010.1|Name=NO14G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=3327bp CAGGATAGGTAGGACTGACCTCAAGCGGGCGGTGTCGATCTCTTCATTCC CCACACGCTCCCTCGAGTTTGAGATCAAACCCACCATGTTCGCGTCGAAG GCCTCCTTGCTCCTCCAAACCGGCCCCCGGCCATCCTTCGTCCTACAACG CGTCCCCACCCTTGCCCACAACCCAACCTGCGCATGGACAGGCCTGAAAC GCCGCCTCACTTCTTCTTCCTCCGGCAGCACCAGCAGCCCCCTCCCCGAT CTCCCTCCCTCCTTCCCTCTCCTTCCCTCCTCCTCCTTGGCCGCCGCTGT TTCCGTTTCTACCCCCTCATTCCTCGGACGGGCCACGCGGGAACTTGCCC GTTGGCGTCGTCACTTTGGGAATTCCGCACGCCGTACGTACACGTCTTAC CACCGCGGAGGGGGACGGCCGCCGTTCCGGCTACCGGAGGGGAATGCCAT CGTCTACGGCCTGATAGGCGCCAATATTTTGGTGTTTGGAGCGTGGACCT ATGCCTCTCAATCCCGGCGGCTGACCCGGTTCATGGTCGAGCACTTCACA GTCTCGGCGGTGGGGGTTTTAGAGCAGGGACGGTTCCATACGTTGTTCAC GGCCATGTTTAGTCACCAGAGCTTCACGCATTTATTGGTGAATTGTGTCA CGCTGTATTTCTTTGGCGCAGAGGCCGCCGTTTTACTGGGAGCTCGGCGT TTCGTGAACCTCTATTTCGCCGGCGGTCTCGCATCATCCTTAGGCTGCGT CCTTTGGCCGTTCGTGGCACCCAAACTCCATATCCCGGCCTCCTACCGCG TCTCCAAGCATACAGTCGCCCTAGGAGCCTCGGGTGCTGTGAACGCTCTC GTTGCTTGGTCTATCTTTATGTTCCCCACGCGCATGGTGTACCTCTACTT GGTGCTGCCCGTGCCTGCCGCGTTGCTCGGTGTCCTCTTCCTTGCCAAGG ATCTCTCGGGACTCTATCAAGGGGGGTCTGGGGAGGCCAATGCAGGGCAT TTGGGAGGGGCGGTGGTTGGGGCTGCTTACTACTTCGTAACGCGCGGTCG TTATTGAGGAGGGAATGCGAGTGTGAAGGGAAATGGGGATTGTGCCATGG GAGGATGGAAGGAGGAATGGAAGGAGGTAGTGGAGGAGCAGGGAGGGAGG GAAGCAGGGACCAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGATGGG AAGTGGAGGTGGACTGAGTAAGGAATAGAAATTCACGAAGAATGTACGAG AGAGATGCACAGGGCGAGCGTGGGCGAGGAGGTGGAAGGGTGGGAAGGGG GGGGGATAGTGGAGAATCAAATAAACAAAAGCCTGTTGGTTAGTGAACAT TAATTTGGGTGGTGGCTGACCACAGCCAAAGCCTCTCTGACGTTGCAGCC GTGCGTGAATTTAAGTTTTTGTCATGCATTTATTTGATTTAGCGTCATGC ATTGACTTGTGTGTTCTTCAAACGCGCTCCCTGACCCTTAAACACAACGC CCGTTTACTTTTCCTCTCTCTTGATGTATTTCTTTGTTTCCTCTTATATC CACCATTTCGTTCTTCGTCTTTTTGTTTCCTTCCTTTTTTTAAAATATTT TTTTCCTTTCTTTTTTCTTTAACTCTTTCGTTCATTTCTGTATTTGTTTA CTTCGTTTCTGGACCTCATTTCTCCTTGGCTCCTCTACACATTACATCTA CAAGACGGAGGGAGGGAGGAAAGGAGGAAGGCAAGGAGGGCGGAAGGGAA ATCAAGAAGCACCCTCCGCTTCAAAAGTAGTCAAAGAGCATCCTCCCCTT CGCCGCGTCCGCTTCACCAACACCTCGGACATAGGGACACGCTCACATGT CAGTCATCAATTATTTTGAATTTCAATAATTCAAATTTGAATGGATAGGG AGAAGCACTGAGGCGGACCCTCATCACCGATGACACATCCCCGATGATAA CCTCCTCCCCCCCCCTGAAGCTTTTTTCCGTCAACGACTGCGGCCGCCGT TACCTATCGTGCCGCGCCCCGGTCCCTGCCCCTCGGCCCACATCAACAAC ATATCAGTGTCCGGCTGGTCCGTGAACTCCTCCCCACTCCCTCTCCCCGC CCCATTTCGGCTCCTAGCGTCGCGATCGCTAACCCAGCTCAGGCATCTCC GCAGGCTCATCGCTTCGTCACCGGTTTCCTGAGAGGGAGAGAGGGAGAAA GGAAGGGAGGGAGGGAGGGAAACGGTGAAATGAGTTGGCGAAGGAATGTA GGAGAAGATCACAAGGACGTGATGGGGAGGAAAGCGGTAACGGAAAAGAC AGACTGGACGGGTGAAGTGGGCAGTGAAACTCATAGGAAGCCAACATGTT GCGAGTGGGTAGGAAGGAGGGGAAACACGTGCCAGTTCAACAGTCTCCCG GAGGGGCCGCAAGGTTTCCAGGAGAGACACAGAGCGGATGCGTTGCGAGG GGTGCGGCGCTGTGTTTTTCAAAATGTTGGCATCGCAGTTTAAAATTAGC TTGGCCGCGTCGTTTCCGTACACACCCAGGGCCTGGTCGTAAATGTCAAA GGGCAGTTTGCCCTTGTGGGTTTCGGGGAGAGGGGAGAAGGGAGGGGTTT GAGGGGATGAGTAAGTGTCGTCCTGCCAATCTCGATTTCCACGTTGTTTT GCTGTCCCCCTTTCCATCGTCCATAAACCTTACCTCGTAGGCATAAAGAA GGTCATTTATGTCCCCCCATGCCGTGATCAACACGGCATTCGTCAAGGGG CGTTTGATGTTCTTCGCCCGCTTAAGTAAGTTGTAAACATGCATAAGACT GATGCACGCCGGATCTGCGTTCAAGACATCACATAGGAGCTTAGTGAGGT TGTAACGGAGGATGAGGGCGACATGCTCTTGTTGTTGGGGGGCTGGATGT ATCTGTTGTTCATGATGCTGAGTGCGTTGCTGCTGGTGCTGCTGCTGCGG GTGCTGCTGCGGGTGTACATGCTCCGGCGACTGCTGTTGCTCGCTCTGCT GCTCCGCGTGCAGCTGTGGCTTGTGAGGGTCCTGCGGCTGATGTGGCTTG TGAGGATGCTGTGCCTGCGAGTGCGAAGTGGTTCGGTGCATGTCGCTGAA GCGTGGTGGCTATAAGTGGGCGGGTAAGTGGGGAGGCTGAATGTGATGGA TCTTTATATGTGCGAGGGGCGAATTATTCCTTGCTCGTTGCTCTTAGGTG GTCGATATAATATATAGCGTCGTTTACGTCTTCGAGAAGGGAAGGGGGCT GTCTGTGCTTGTTGCGAGTGCAAGACGTAGTCGCGTAATCATCCACATGG ATTTAACTTCGCGAAGGCAAAGTAAGG back to topprotein sequence of NO14G03010.1 >NO14G03010.1-protein ID=NO14G03010.1-protein|Name=NO14G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp MFASKASLLLQTGPRPSFVLQRVPTLAHNPTCAWTGLKRRLTSSSSGSTS SPLPDLPPSFPLLPSSSLAAAVSVSTPSFLGRATRELARWRRHFGNSARR TYTSYHRGGGRPPFRLPEGNAIVYGLIGANILVFGAWTYASQSRRLTRFM VEHFTVSAVGVLEQGRFHTLFTAMFSHQSFTHLLVNCVTLYFFGAEAAVL LGARRFVNLYFAGGLASSLGCVLWPFVAPKLHIPASYRVSKHTVALGASG AVNALVAWSIFMFPTRMVYLYLVLPVPAALLGVLFLAKDLSGLYQGGSGE ANAGHLGGAVVGAAYYFVTRGRY* back to topmRNA from alignment at chr14:890555..894570+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G03010.1 ID=NO14G03010.1|Name=NO14G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=4016bp|location=Sequence derived from alignment at chr14:890555..894570+ (Nannochloropsis oceanica) CAGGATAGGTAGGACTGACCTCAAGCGGGCGGTGTCGATCTCTTCATTCC
CCACACGCTCCCTCGAGTTTGAGATCAAACCCACCATGTTCGCGTCGAAG
GCCTCCTTGCTCCTCCAAACCGGCCCCCGGCCATCCTTCGTCCTACAACG
CGTCCCCACCCTTGCCCACAACCCAACCTGCGCATGGACAGGCCTGAAAC
GCCGCCTCACTTCTTCTTCCTCCGGCAGCACCAGCAGCCCCCTCCCCGAT
CTCCCTCCCTCCTTCCCTCTCCTTCCCTCCTCCTCCTTGGCCGCCGCTGT
TTCCGTTTCTACCCCCTCATTCCTCGGACGGGCCACGCGGGAACTTGCCC
GTTGGCGTCGTCACTTTGGGAATTCCGCACGCCGTACGTACACGTCTTAC
CACCGCGGAGGGGGACGGCCGCCGTTCCGGCTACCGGAGGGGAATGCCAT
CGTCTACGGCCTGATAGGCGCCAATATTTTGGTGTTTGGAGCGTGGACCT
ATGCCTCTCAATCCCGGCGGCTGACCCGGTTCATGGTCGAGCACTTCACA
GTCTCGGCGGTGGGGGTTTTAGAGCAGGGACGGTTCCATACGTTGTTCAC
GGCCATGTTTAGTCACCAGAGCTTCACGCATTTATTGGTGAATTGTGTCA
CGCTGTATTTCTTTGGCGCAGAGGGTAAGACGAAGGAAGGGAAGAAGAAG
GGGAAGGTCGAAGGGAGGACTGTTTTCTTTGTTTTACGTTGTTGCCTCCA
TTTTCACTTATCCTCCTTCCCTCCTTTCCCGTTCCTCCCCACCTCCCTCC
CTCTCTTGTCAGCCGCCGTTTTACTGGGAGCTCGGCGTTTCGTGAACCTC
TATTTCGCCGGCGGTCTCGCATCATCCTTAGGCTGCGTCCTTTGGCCGTT
CGTGGCACCCAAGTACGCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCTATGTCCTTTCCTTCA
ACCAACCAACCAACCTCCCCCATCCCCCTCGTCCTCCCTCCTTCCCTCCC
TCCCAACGTGCCTCAGACTCCATATCCCGGCCTCCTACCGCGTCTCCAAG
CATACAGTCGCCCTAGGAGCCTCGGGTGCTGTGAACGCTCTCGTTGCTTG
GTCTATCTTTATGTTCCCCACGCGCATGGTGTACCTCTACTTGGTGCTGG
TACGTGTGCTAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTCCTTCCTCCCTTCCTTCCTCCCTTCCCTCCCTTCGAATCAAACTTCC
TCCCAATCCATTTTCCCTTCCCGCGAAGTGTCCTCTTCCATCATACTGTA
CCAAGCCTTTTCCCACCCCCATCCTTCCCTCCCTCCCCCCCTTCCTCGAC
CCTATCCTCCAGCCCGTGCCTGCCGCGTTGCTCGGTGTCCTCTTCCTTGC
CAAGGATCTCTCGGGACTCTATCAAGGGGGGTCTGGGGAGGCCAATGCAG
GTACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGAGGGA
GGGAGGGCTGCCGCTGGGCAGCGTTGCCTTGGTTGTTCTGTAGGGAGGGT
GCATGAAGTATTTTTTTTTCAAAAATAGCGAGGGCCGTGATCGATCAAAC
CGTTGCTGGCCGTTAAACACCGTTACGTACACAGGGCATTTGGGAGGGGC
GGTGGTTGGGGCTGCTTACTACTTCGTAACGCGCGGTCGTTATTGAGGAG
GGAATGCGAGTGTGAAGGGAAATGGGGATTGTGCCATGGGAGGATGGAAG
GAGGAATGGAAGGAGGTAGTGGAGGAGCAGGGAGGGAGGGAAGCAGGGAC
CAAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGATGGGAAGTGGAGGTG
GACTGAGTAAGGAATAGAAATTCACGAAGAATGTACGAGAGAGATGCACA
GGGCGAGCGTGGGCGAGGAGGTGGAAGGGTGGGAAGGGGGGGGGATAGTG
GAGAATCAAATAAACAAAAGCCTGTTGGTTAGTGAACATTAATTTGGGTG
GTGGCTGACCACAGCCAAAGCCTCTCTGACGTTGCAGCCGTGCGTGAATT
TAAGTTTTTGTCATGCATTTATTTGATTTAGCGTCATGCATTGACTTGTG
TGTTCTTCAAACGCGCTCCCTGACCCTTAAACACAACGCCCGTTTACTTT
TCCTCTCTCTTGATGTATTTCTTTGTTTCCTCTTATATCCACCATTTCGT
TCTTCGTCTTTTTGTTTCCTTCCTTTTTTTAAAATATTTTTTTCCTTTCT
TTTTTCTTTAACTCTTTCGTTCATTTCTGTATTTGTTTACTTCGTTTCTG
GACCTCATTTCTCCTTGGCTCCTCTACACATTACATCTACAAGACGGAGG
GAGGGAGGAAAGGAGGAAGGCAAGGAGGGCGGAAGGGAAATCAAGAAGCA
CCCTCCGCTTCAAAAGTAGTCAAAGAGCATCCTCCCCTTCGCCGCGTCCG
CTTCACCAACACCTCGGACATAGGGACACGCTCACATGTCAGTCATCAAT
TATTTTGAATTTCAATAATTCAAATTTGAATGGATAGGGAGAAGCACTGA
GGCGGACCCTCATCACCGATGACACATCCCCGATGATAACCTCCTCCCCC
CCCCTGAAGCTTTTTTCCGTCAACGACTGCGGCCGCCGTTACCTATCGTG
CCGCGCCCCGGTCCCTGCCCCTCGGCCCACATCAACAACATATCAGTGTC
CGGCTGGTCCGTGAACTCCTCCCCACTCCCTCTCCCCGCCCCATTTCGGC
TCCTAGCGTCGCGATCGCTAACCCAGCTCAGGCATCTCCGCAGGCTCATC
GCTTCGTCACCGGTTTCCTGAGAGGGAGAGAGGGAGAAAGGAAGGGAGGG
AGGGAGGGAAACGGTGAAATGAGTTGGCGAAGGAATGTAGGAGAAGATCA
CAAGGACGTGATGGGGAGGAAAGCGGTAACGGAAAAGACAGACTGGACGG
GTGAAGTGGGCAGTGAAACTCATAGGAAGCCAACATGTTGCGAGTGGGTA
GGAAGGAGGGGAAACACGTGCCAGTTCAACAGTCTCCCGGAGGGGCCGCA
AGGTTTCCAGGAGAGACACAGAGCGGATGCGTTGCGAGGGGTGCGGCGCT
GTGTTTTTCAAAATGTTGGCATCGCAGTTTAAAATTAGCTTGGCCGCGTC
GTTTCCGTACACACCCAGGGCCTGGTCGTAAATGTCAAAGGGCAGTTTGC
CCTTGTGGGTTTCGGGGAGAGGGGAGAAGGGAGGGGTTTGAGGGGATGAG
TAAGTGTCGTCCTGCCAATCTCGATTTCCACGTTGTTTTGCTGTCCCCCT
TTCCATCGTCCATAAACCTTACCTCGTAGGCATAAAGAAGGTCATTTATG
TCCCCCCATGCCGTGATCAACACGGCATTCGTCAAGGGGCGTTTGATGTT
CTTCGCCCGCTTAAGTAAGTTGTAAACATGCATAAGACTGATGCACGCCG
GATCTGCGTTCAAGACATCACATAGGAGCTTAGTGAGGTTGTAACGGAGG
ATGAGGGCGACATGCTCTTGTTGTTGGGGGGCTGGATGTATCTGTTGTTC
ATGATGCTGAGTGCGTTGCTGCTGGTGCTGCTGCTGCGGGTGCTGCTGCG
GGTGTACATGCTCCGGCGACTGCTGTTGCTCGCTCTGCTGCTCCGCGTGC
AGCTGTGGCTTGTGAGGGTCCTGCGGCTGATGTGGCTTGTGAGGATGCTG
TGCCTGCGAGTGCGAAGTGGTTCGGTGCATGTCGCTGAAGCGTGGTGGCT
ATAAGTGGGCGGGTAAGTGGGGAGGCTGAATGTGATGGATCTTTATATGT
GCGAGGGGCGAATTATTCCTTGCTCGTTGCTCTTAGGTGGTCGATATAAT
ATATAGCGTCGTTTACGTCTTCGAGAAGGGAAGGGGGCTGTCTGTGCTTG
TTGCGAGTGCAAGACGTAGTCGCGTAATCATCCACATGGATTTAACTTCG
CGAAGGCAAAGTAAGG back to topCoding sequence (CDS) from alignment at chr14:890555..894570+ >NO14G03010.1 ID=NO14G03010.1|Name=NO14G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at chr14:890555..894570+ (Nannochloropsis oceanica) ATGTTCGCGTCGAAGGCCTCCTTGCTCCTCCAAACCGGCCCCCGGCCATC CTTCGTCCTACAACGCGTCCCCACCCTTGCCCACAACCCAACCTGCGCAT GGACAGGCCTGAAACGCCGCCTCACTTCTTCTTCCTCCGGCAGCACCAGC AGCCCCCTCCCCGATCTCCCTCCCTCCTTCCCTCTCCTTCCCTCCTCCTC CTTGGCCGCCGCTGTTTCCGTTTCTACCCCCTCATTCCTCGGACGGGCCA CGCGGGAACTTGCCCGTTGGCGTCGTCACTTTGGGAATTCCGCACGCCGT ACGTACACGTCTTACCACCGCGGAGGGGGACGGCCGCCGTTCCGGCTACC GGAGGGGAATGCCATCGTCTACGGCCTGATAGGCGCCAATATTTTGGTGT TTGGAGCGTGGACCTATGCCTCTCAATCCCGGCGGCTGACCCGGTTCATG GTCGAGCACTTCACAGTCTCGGCGGTGGGGGTTTTAGAGCAGGGACGGTT CCATACGTTGTTCACGGCCATGTTTAGTCACCAGAGCTTCACGCATTTAT TGGTGAATTGTGTCACGCTGTATTTCTTTGGCGCAGAGGCCGCCGTTTTA CTGGGAGCTCGGCGTTTCGTGAACCTCTATTTCGCCGGCGGTCTCGCATC ATCCTTAGGCTGCGTCCTTTGGCCGTTCGTGGCACCCAAACTCCATATCC CGGCCTCCTACCGCGTCTCCAAGCATACAGTCGCCCTAGGAGCCTCGGGT GCTGTGAACGCTCTCGTTGCTTGGTCTATCTTTATGTTCCCCACGCGCAT GGTGTACCTCTACTTGGTGCTGCCCGTGCCTGCCGCGTTGCTCGGTGTCC TCTTCCTTGCCAAGGATCTCTCGGGACTCTATCAAGGGGGGTCTGGGGAG GCCAATGCAGGGCATTTGGGAGGGGCGGTGGTTGGGGCTGCTTACTACTT CGTAACGCGCGGTCGTTATTGA back to top
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