NO14G03000.1, NO14G03000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G03000.1
Unique NameNO14G03000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1793
Alignment locationchr14:887710..890460 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:887710..890460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G03000.1 vs.
Match: XP_002287204.1 (v-type ATPase [Thalassiosira pseudonana CCMP1335]; XP_002287702.1 vacuolar ATP synthase [Thalassiosira pseudonana CCMP1335]; EED94647.1 v-type ATPase [Thalassiosira pseudonana CCMP1335]; EED95145.1 vacuolar ATP synthase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 247.7 bits (631), Expect = 2.800e-62
Identity = 135/166 (81.33%), Postives = 151/166 (90.96%), Query Frame = 0 
Query:   10 VEKCPASAPFFGFMGVTAAIVFANLGSAYGTAKSGVGISSMGVMNPGLVMRNVIPVVMAGILGIYGLIVAVIITGNIAAPASVGDLLQTKYSLYSGFAHLAAGLSCGLSSLAAGIAIGVVGDAGVRAVGQQERLFVGMILILIFAEALGLYGLIVSLILSQQNVYC 176
            +E CPASAPFFGFMGVTAA+VFAN+G+AYGTAKSGVGISSMGVMNPGLVMRN+IPVVMAG+LGIYGLIVAVII G+I AP +      ++YSLY+GFAHLAAGL CGLS LAAG+AIG+VGDAGVRAVGQQE+LFVGMILILIFAEALGLYGLIV+LILSQ +  C
Sbjct:    1 METCPASAPFFGFMGVTAALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSIVAPQNG----LSQYSLYTGFAHLAAGLCCGLSGLAAGMAIGIVGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVC 162
The following BLAST results are available for this feature:
BLAST of NO14G03000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002287204.12.800e-6281.33v-type ATPase [Thalassiosira pseudonana CCMP1335];... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G03000NO14G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G03000.1NO14G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G03000.1.cds1NO14G03000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03000.1.cds2NO14G03000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03000.1.cds3NO14G03000.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03000.1.cds4NO14G03000.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03000.1.cds5NO14G03000.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G03000.1 ID=NO14G03000.1|Name=NO14G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp
TGCTTTTTGGGTGTTGAGCCTCGCTGAGACTGCTCGAGACAGGTCAAGTC
AGGCACCGCGTGACTGGGACCAATTCCATCATCCTCAGTTATTTCTACAT
GTCCTGGGCGGGTTCGTTTTGCGTTCTCCTCCTTTGCACCTTGTTCCTTG
TACTACTTTGTCCCATGCCACCCTGTCGCATTTCGCACCCACACGGCGTG
CTGATTGCTGGGTGCAGGCGCAGAGCACGAGTGATGGGCTTGCCGTCCTC
ATTATGGTAAGGCATCACAGCTCCCTCGCTAAGGCAAGATTCTCCGGGCG
CTGATTTTTTGTCATAGGGCCGTGCGGTGTGGACGGGCAACCAGGAGATT
TAGACTTCGTGGGGAGCTAGACGGACGAGACGCGAGAGACGCGGCCCGAG
TCGTGTGAGGTGCAAGAGGCCTGGTACGCGTTGCATGAAGCATCGATTAC
CACACCATCATCACACGACCAGGCCAACGCCTCCGAGAGAAGTTCTTGTT
GAGGCCGCGGCGTGTGCTTCTCATGTTCAAAACCTCACACCGCAGCCCAT
GAACACACGCAAGCGAAGCCAGCAGAAGACGCATGGATGCCCCTGATGCT
TAAGCTGGAGTGGGAAGGCGTGGACTGTCGCTGGGCGAATTTAGAAAGCG
ACAGCATCGTCTTGCATCTCCGTCCTTCCTGTCCTTATTCCGCACGCAAA
GTTAAACACCATAACATCACTCATCATCCTTCACACACATACGCGCACTC
CAAACGCCTCATATAGATACATTTAGCAAGATGGCTGACGTGGTAGCCAC
GCCTCAGGTTGAGAAGTGTCCGGCCTCGGCCCCCTTCTTTGGCTTCATGG
GAGTGACGGCCGCCATCGTCTTTGCCAACCTCGGGTCCGCCTATGGCACG
GCCAAGTCAGGTGTGGGCATCAGCTCTATGGGTGTGATGAACCCGGGCCT
GGTGATGCGCAATGTCATCCCTGTCGTCATGGCGGGTATCCTCGGTATTT
ACGGTTTGATCGTCGCCGTCATTATTACCGGAAACATCGCGGCGCCTGCC
TCTGTAGGTGACTTGCTTCAGACGAAATACTCCCTTTACTCGGGTTTCGC
CCACTTGGCAGCTGGCTTATCTTGTGGCCTCAGCTCCCTGGCCGCTGGCA
TTGCCATCGGTGTGGTCGGTGACGCGGGCGTCCGTGCCGTAGGGCAGCAG
GAGCGGCTCTTCGTGGGGATGATCCTCATCCTCATTTTCGCCGAGGCGCT
GGGGCTCTACGGTCTGATTGTTTCCCTGATTCTGTCCCAGCAGAACGTCT
ACTGCGGCGCATAAGCAGCTGTTCTCGTGGGCCTCCCTCGCTCCCTCCCT
CGCTCCCTCCCCCGCTCCTGCCCTACGTCCCTCCTTCCCTCCCTGCCCTT
TCCGCTTGCTTGCGAAAAGGCATTGAGACGGGAGGAAGAGCAGGGGGGAA
TAGGGCAGGGAGGGAAAAAGAGAATGACGGAGCGAGGGAGGGAGAGAGGG
ATGGAGGACGGCTCCTACTGGTATGTTATCATGGTGGGGAAAAATACACA
ACGCTTATATTGAGAAAAATATTGAAAAGAAAGAAAAAGAAGAGAGGAGG
AGGAGGAGGAGGAGAAAGAAATAAAGAAGGGAGGGAGACAGATGAGAAAA
AGAGGTAGGGGTCAGAAAGGTCATTGACAAGAGAAGAAAAGAGAGAGGGA
GGCAGAAGGGAGTGAGGGTGACAGACAGGAGGAGGATGAGAGGAAAGATT
AGTATTGATCTCACCAAAGAATTGAAATCAAATTAAAAAGTAA
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protein sequence of NO14G03000.1

>NO14G03000.1-protein ID=NO14G03000.1-protein|Name=NO14G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MADVVATPQVEKCPASAPFFGFMGVTAAIVFANLGSAYGTAKSGVGISSM
GVMNPGLVMRNVIPVVMAGILGIYGLIVAVIITGNIAAPASVGDLLQTKY
SLYSGFAHLAAGLSCGLSSLAAGIAIGVVGDAGVRAVGQQERLFVGMILI
LIFAEALGLYGLIVSLILSQQNVYCGA*
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mRNA from alignment at chr14:887710..890460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G03000.1 ID=NO14G03000.1|Name=NO14G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2751bp|location=Sequence derived from alignment at chr14:887710..890460- (Nannochloropsis oceanica)
TGCTTTTTGGGTGTTGAGCCTCGCTGAGACTGCTCGAGACAGGTCAAGTC
AGGCACCGCGTGACTGGGACCAATTCCATCATCCTCAGTTATTTCTACAT
GTCCTGGGCGGGTTCGTTTTGCGTTCTCCTCCTTTGCACCTTGTTCCTTG
TACTACTTTGTCCCATGCCACCCTGTCGCATTTCGCACCCACACGGCGTG
CTGATTGCTGGGTGCAGGCGCAGAGCACGAGTGATGGGCTTGCCGTCCTC
ATTATGGTAAGGCATCACAGCTCCCTCGCTAAGGCAAGATTCTCCGGGCG
CTGATTTTTTGTCATAGGGCCGTGCGGTGTGGACGGGCAACCAGGAGATT
TAGACTTCGTGGGGAGCTAGACGGACGAGACGCGAGAGACGCGGCCCGAG
TCGTGTGAGGTGCAAGAGGCCTGGTACGCGTTGCATGAAGCATCGATTAC
CACACCATCATCACACGACCAGGCCAACGCCTCCGAGAGAAGTTCTTGTT
GAGGCCGCGGCGTGTGCTTCTCATGTTCAAAACCTCACACCGCAGCCCAT
GAACACACGCAAGCGAAGCCAGCAGAAGACGCATGGATGCCCCTGATGCT
TAAGCTGGAGTGGGAAGGCGTGGACTGTCGCTGGGCGAATTTAGAAAGCG
ACAGCATCGTCTTGCATCTCCGTCCTTCCTGTCCTTATTCCGCACGCAAA
GTTAAACACCATAACATCACTCATCATCCTTCACACACATACGCGCACTC
CAAACGCCTCATATAGATACATTTAGCAAGATGGCTGACGTGGTAGCCAC
GCCTCAGGTTGAGAAGTGTCCGGCCTCGGCCCCCTTCTTTGGCTTCATGG
GAGTGACGGCCGCCATCGTCTTTGCCAGTACGTGAGATGGAGGGACAAAG
GGGACGGGAGAAACAGGGGGGGGTAAATCGAGGAGTGGTCATATGGAGAG
AGTTTATGGGAATGAAGAGGGAGGAGGTGGCAGGAAGACCGTGGAATCGT
TTTTAGGGACCTATTCTTCCCCGCTTCTCAACTGCCCGAGACATGTTGCA
TGAATGAAAGTGGAGTCATTTCTCAGATGACATTCACGCAAATTAAACAT
ATGTATCGCCCCTAGTCCCTCCACTTACTCCCCCCTCTCCCTCCCCTCCC
CTCCCTGCGAACGAACAGACCTCGGGTCCGCCTATGGCACGGCCAAGTCA
GGTGTGGGCATCAGCTCTATGGGTGTGATGAACCCGGGCCTGGTGATGCG
CAATGTCATCCCTGTCGTCATGGCGGGTATCCTCGGTATTTACGGTTTGA
TCGTCGCCGTCATTATTACCGGAAACAGTAAGGCCTCCCTACCTCCCTCC
CTCCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTACCTCCCTCCCTCCCTCCCTCCCTCCCAC
CCTCCCTCCCTACCTCCCTTCCTTCCTCCATCCCTTCCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTTTTTGCTACCGCGTCACGCTCTTTTCCTCACTT
GCTTGCCATCTAACCCTCCCCCCATCCCTCCCTCCCTCCCTCCCTCCCTT
TATCCCAAGTCGCGGCGCCTGCCTCTGTAGGTGACTTGCTTCAGACGAAA
TACTCCCTTTACTCGGGTTTCGCCCACTTGGCAGCTGGCTTATCTTGTGG
CCTCAGGTACTATAGGGACAAGAAAAATCTCTTCGCTCGCTCCCCCCCTC
CCACCCTCCCCTCCCTTCCCTCCCTCGCTTCCTACCTCCGGACCAAGCAC
GCATTCCCACATTCTGTCTTCCCCCCTCTCCCCCTCCCCCCCCCTCGTCA
ACAGCTCCCTGGCCGCTGGCATTGCCATCGGTGTGGTCGGTGACGCGGGC
GTCCGTGCCGTAGGGCAGCAGGAGCGGCTCTTCGTGGGGATGATCCTCAT
CCTCATTTTCGCCGAGGCGCTGGGTAAGGAGGGAGGGAGGGAGGGAGGGA
GGGGGGAATTGATTGAAAGAATGCAACGAGACGTGGAATTGGAGGGAGGG
GGGGCAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGTAGGGATG
GAGGATTGCTTGGCAGTGTAGTCATGTCGCAGATTTACTCACCCATCCTT
ATTTTTCCTTTCCTTCCTTCCTTCTCTCCCTGCTTCTTTCCCTCCCTCCC
TCCCTTCCAGGGCTCTACGGTCTGATTGTTTCCCTGATTCTGTCCCAGCA
GAACGTCTACTGCGGCGCATAAGCAGCTGTTCTCGTGGGCCTCCCTCGCT
CCCTCCCTCGCTCCCTCCCCCGCTCCTGCCCTACGTCCCTCCTTCCCTCC
CTGCCCTTTCCGCTTGCTTGCGAAAAGGCATTGAGACGGGAGGAAGAGCA
GGGGGGAATAGGGCAGGGAGGGAAAAAGAGAATGACGGAGCGAGGGAGGG
AGAGAGGGATGGAGGACGGCTCCTACTGGTATGTTATCATGGTGGGGAAA
AATACACAACGCTTATATTGAGAAAAATATTGAAAAGAAAGAAAAAGAAG
AGAGGAGGAGGAGGAGGAGGAGAAAGAAATAAAGAAGGGAGGGAGACAGA
TGAGAAAAAGAGGTAGGGGTCAGAAAGGTCATTGACAAGAGAAGAAAAGA
GAGAGGGAGGCAGAAGGGAGTGAGGGTGACAGACAGGAGGAGGATGAGAG
GAAAGATTAGTATTGATCTCACCAAAGAATTGAAATCAAATTAAAAAGTA
A
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Coding sequence (CDS) from alignment at chr14:887710..890460-

>NO14G03000.1 ID=NO14G03000.1|Name=NO14G03000.1|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at chr14:887710..890460- (Nannochloropsis oceanica)
ATGGCTGACGTGGTAGCCACGCCTCAGGTTGAGAAGTGTCCGGCCTCGGC
CCCCTTCTTTGGCTTCATGGGAGTGACGGCCGCCATCGTCTTTGCCAACC
TCGGGTCCGCCTATGGCACGGCCAAGTCAGGTGTGGGCATCAGCTCTATG
GGTGTGATGAACCCGGGCCTGGTGATGCGCAATGTCATCCCTGTCGTCAT
GGCGGGTATCCTCGGTATTTACGGTTTGATCGTCGCCGTCATTATTACCG
GAAACATCGCGGCGCCTGCCTCTGTAGGTGACTTGCTTCAGACGAAATAC
TCCCTTTACTCGGGTTTCGCCCACTTGGCAGCTGGCTTATCTTGTGGCCT
CAGCTCCCTGGCCGCTGGCATTGCCATCGGTGTGGTCGGTGACGCGGGCG
TCCGTGCCGTAGGGCAGCAGGAGCGGCTCTTCGTGGGGATGATCCTCATC
CTCATTTTCGCCGAGGCGCTGGGGCTCTACGGTCTGATTGTTTCCCTGAT
TCTGTCCCAGCAGAACGTCTACTGCGGCGCATAA
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Synonyms
Publications