NO14G02930.1, NO14G02930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02930.1
Unique NameNO14G02930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length453
Alignment locationchr14:867644..868860 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:867644..868860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02930.1 vs.
Match: XP_647439.1 (UAS domain-containing protein [Dictyostelium discoideum AX4]; Q9NIF3.1 RecName: Full=Ubiquilin; AltName: Full=Suppressor of NosA; AAF43003.1 ubiquitin-like fusion protein SonA [Dictyostelium discoideum AX3]; EAL73179.1 UAS domain-containing protein [Dictyostelium discoideum AX4])

HSP 1 Score: 80.5 bits (197), Expect = 5.000e-12
Identity = 61/133 (45.86%), Postives = 77/133 (57.89%), Query Frame = 0 
Query:    1 MMSNPAFMDQMAASNPQLRQMLDSNPQARAMMSDPQFIQQMTDPNTMRAMMQLQRS-GMLPGMGGFPALGGAAPGTTGIGG-AGTGGGGGGGGLPGLDFSALLYQMGG----GGLEHRTGRRLPPPCPSQIPP 128
            +MS+PA M QM   NPQLRQM+DSNPQ R  M++P+F+  MT+P  M AMMQLQ++ G L   G FP          G+GG  G GG GG GG+ G+DFS      GG    GG+ +       PP  +Q PP
Sbjct:  359 LMSDPAMMQQMITMNPQLRQMMDSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLRNNGVFPG---------GMGGMGGMGGMGGMGGMGGMDFSQFGNMFGGMGGMGGMGNNNSSTTRPPV-NQEPP 481
The following BLAST results are available for this feature:
BLAST of NO14G02930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_647439.15.000e-1245.86UAS domain-containing protein [Dictyostelium disco... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02930NO14G02930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02930.1NO14G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02930.1.cds1NO14G02930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02930.1.cds2NO14G02930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02930.1.cds3NO14G02930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02930.1.cds4NO14G02930.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02930.1.cds5NO14G02930.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02930.1 ID=NO14G02930.1|Name=NO14G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
ATGATGTCCAACCCCGCCTTTATGGACCAGATGGCGGCTAGCAATCCCCA
GCTCCGGCAGATGCTTGATTCGAATCCTCAGGCCCGGGCCATGATGTCCG
ACCCGCAGTTCATCCAGCAGATGACGGATCCTAACACCATGCGGGCTATG
ATGCAACTGCAGCGATCGGGGATGCTGCCGGGCATGGGAGGGTTCCCGGC
ACTCGGCGGTGCTGCCCCCGGTACCACAGGCATTGGAGGAGCAGGAACAG
GAGGAGGAGGAGGAGGAGGAGGACTGCCGGGGTTGGATTTTTCGGCCTTG
TTATATCAGATGGGGGGGGGGGGGTTGGAGCACCGCACGGGGCGCCGGCT
CCCTCCGCCATGCCCGTCGCAGATCCCGCCACGCACTACGCCGCGCAGTT
GCAGCAACTCCGCGACATGGGCTTCGTGGATGAGGCGCGCAACATTCAGG
TAG
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protein sequence of NO14G02930.1

>NO14G02930.1-protein ID=NO14G02930.1-protein|Name=NO14G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MMSNPAFMDQMAASNPQLRQMLDSNPQARAMMSDPQFIQQMTDPNTMRAM
MQLQRSGMLPGMGGFPALGGAAPGTTGIGGAGTGGGGGGGGLPGLDFSAL
LYQMGGGGLEHRTGRRLPPPCPSQIPPRTTPRSCSNSATWASWMRRATFR
*
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mRNA from alignment at chr14:867644..868860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02930.1 ID=NO14G02930.1|Name=NO14G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp|location=Sequence derived from alignment at chr14:867644..868860+ (Nannochloropsis oceanica)
ATGATGTCCAACCCCGCCTTTATGGACCAGGTGCGCCCTCCCTCCCTCCT
CCCCTTCGTGTCTTCCTCCGTTGGGGAAATGCTTAGTATAGTGGCTTTAC
CCCTCATCCTTCCGTTGATGCGGGCCTGCAAGTCGGTGGAGGCCTCACCT
CTCCCCCCTCCCTTTCTTCCTCCCACCCTAGATGGCGGCTAGCAATCCCC
AGCTCCGGCAGATGCTTGATTCGAATCCTCAGGCCCGGGCCATGATGTCC
GACCCGCAGGTAAAGAGAGTTAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGAGGAAGAGAAGCACATAGATTTGGCAGAAGCATTCACATGCTCTCCT
TTCTTTACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGTTCA
TCCAGCAGATGACGGATCCTAACACCATGCGGGCTATGATGCAACTGCAG
CGATCGGGGATGCTGCCGGGGTATGGGAGGGAGGGAGGGAGGGAGGGGTA
GTGAGACGCGGGGGGGAGGCAACCCTCTGCTTCTTCCATATTCCACGATA
GACTCCTTGAATCACCTTTACACGCGATCTCGCTCGCTAGAATGCATGCA
CGCCCACCCTTCTCTTTCTCATTCTCATCCTCGTCCTCATCCTCCTCCTT
ATTTTCGTTCTCCCTCTCCTTCTCCCTTCGAACCCCTTCCTTTGGAGACA
CCTCGTCTCCTTTACCTTCTATTAATCATCACCTTAACTCATTTCCAACA
CTCAACAGCATGGGAGGGTTCCCGGCACTCGGCGGTGCTGCCCCCGGTAC
CACAGGCATTGGAGGAGCAGGAACAGGAGGAGGAGGAGGAGGAGGAGGAC
TGCCGGGGTTGGATTTTTCGGCCTTGTTATATCAGATGGGGGGGGGGGGG
TTGGAGCACCGCACGGGGCGCCGGTACGTCGGGTTTCACCCCTGGCTCAT
TTTCCCTCCTTCCCTCCCTTTTTCTCTTCCTCTCTCCTACGCGCGTGGGT
CTTCTTTTCGTCTCTCCTACGCGCGTGCACCCCATCATGGCCGTCAAGTA
GTTTCAAGTACTGACATAACCCCTCTCCCTCCCTCCCTCCCCCCCTCCCT
CCCTCTCCCAGGCTCCCTCCGCCATGCCCGTCGCAGATCCCGCCACGCAC
TACGCCGCGCAGTTGCAGCAACTCCGCGACATGGGCTTCGTGGATGAGGC
GCGCAACATTCAGGTAG
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Coding sequence (CDS) from alignment at chr14:867644..868860+

>NO14G02930.1 ID=NO14G02930.1|Name=NO14G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr14:867644..868860+ (Nannochloropsis oceanica)
ATGATGTCCAACCCCGCCTTTATGGACCAGATGGCGGCTAGCAATCCCCA
GCTCCGGCAGATGCTTGATTCGAATCCTCAGGCCCGGGCCATGATGTCCG
ACCCGCAGTTCATCCAGCAGATGACGGATCCTAACACCATGCGGGCTATG
ATGCAACTGCAGCGATCGGGGATGCTGCCGGGCATGGGAGGGTTCCCGGC
ACTCGGCGGTGCTGCCCCCGGTACCACAGGCATTGGAGGAGCAGGAACAG
GAGGAGGAGGAGGAGGAGGAGGACTGCCGGGGTTGGATTTTTCGGCCTTG
TTATATCAGATGGGGGGGGGGGGGTTGGAGCACCGCACGGGGCGCCGGCT
CCCTCCGCCATGCCCGTCGCAGATCCCGCCACGCACTACGCCGCGCAGTT
GCAGCAACTCCGCGACATGGGCTTCGTGGATGAGGCGCGCAACATTCAGG
TAG
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Synonyms
Publications