NO14G02860.1, NO14G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02860.1
Unique NameNO14G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1522
Alignment locationchr14:849407..851392 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:849407..851392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02860.1 vs.
Match: EWM24522.1 (solute carrier family 35 member f1 [Nannochloropsis gaditana])

HSP 1 Score: 406.4 bits (1043), Expect = 1.100e-109
Identity = 236/408 (57.84%), Postives = 283/408 (69.36%), Query Frame = 0 
Query:   27 EEEDVETASSISHTTASTALLYLPPSGSPSPPSTPSTSAETTTATASKEQRHRLLLGLGLGQILSLLIAGTGIFSSLLAEQGLSLPATQACLTYILLSLHLTRRPRGQPLHVTWWKYLVLAAIDLEGNYLVVLSFRYTSITSVLLLDGFAIPCTMLLSRLYLKSRFQLLHFVGVVACLAGLGVVVYSDYRVLHAHEG-------------------GSDEDGGQVMRV--------SSSTSSAVSSSVTTSAAATFPHALEGDLLTLLGAALYACSNVLQELVLKTHDNPHEFLGMLGGFGFLLASLQALFVEWGREGGRKGEEKEWEEGLGYMFGFALTLATMYTLTAIFLREADATLFNLSLLTSDVYAVLYRYFAQHQPISWLYGLGFLFTLGGLGLYHVPGAVN 408
            +EED++  +++        LL LP S S + P     S+E  +         R L  +GLGQ+LSLLI  TGIFSSLLAE G S+PATQACLTY +LS HL R PRG+PL V WWKYL+LAAIDLEGNYLVVLSFRYTSITSVLLLDGFAIP TML S +YL+SR++ LHFVGV+ACLAGLG VV+SD R+L   +                    G D     ++          S+S S    S V++S+ ++FP AL GDLL LLGA LYA SNV+QE ++KTHD P EFLGMLGG G +LA +QAL +E GREGGR+G ++ W   +GY+ GFA+TLA MYTLTA FL EADATLFNLSLLTSD Y V YRY A HQP+S+LYG+GF  TLGGLG+YHVPGAVN
Sbjct:   16 KEEDIDLENAVEDP-----LLSLPVSSSTTSPLP--LSSELPSDAPPPPPSSRFLFDIGLGQVLSLLITATGIFSSLLAESGRSIPATQACLTYFILSFHLCRLPRGEPLKVAWWKYLLLAAIDLEGNYLVVLSFRYTSITSVLLLDGFAIPSTMLFSWIYLRSRYKSLHFVGVLACLAGLGTVVFSDSRLLPRQDDKDTVAAVSFLSPSPSPLFTGPDAPLTSILSSSPHPLRPGSASLSPPSPSLVSSSSPSSFPPALLGDLLCLLGATLYAVSNVVQEAIVKTHD-PTEFLGMLGGLGTILAGVQALVLELGREGGREGGKEGWGVEMGYLVGFAVTLAIMYTLTARFLTEADATLFNLSLLTSDAYGVFYRYVALHQPVSYLYGVGFCLTLGGLGIYHVPGAVN 415
The following BLAST results are available for this feature:
BLAST of NO14G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24522.11.100e-10957.84solute carrier family 35 member f1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02860NO14G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02860.1NO14G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02860.1.cds1NO14G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02860.1.cds2NO14G02860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02860.1.cds3NO14G02860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02860.1.cds4NO14G02860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02860.1 ID=NO14G02860.1|Name=NO14G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp
GCTAAATTACGACCTTTGATTTCGATCTGTCTGAGGCATACGTATGTGTC
TCCTTTCGACCGTGATGAGACTTTCAGGCAAATGTGCCGTCTAGTATTCG
ACAATTGCGACATGCACTACACACACACAATCAGGAGCATGGCAGTCAAT
CTACTTCGGGAAGAGGAAGACGTGGAGACAGCATCCTCCATCTCCCACAC
TACGGCTTCCACAGCCCTCCTCTACCTCCCACCCTCGGGCTCGCCATCTC
CTCCTTCGACACCTTCCACCTCAGCTGAGACCACGACAGCAACAGCATCA
AAGGAACAACGTCATCGTCTGCTTCTCGGCCTCGGCTTGGGCCAAATACT
CTCGTTACTCATTGCGGGGACAGGTATTTTCTCATCCCTGCTCGCGGAGC
AAGGGCTATCCCTCCCAGCAACCCAAGCATGCCTGACCTACATCCTCCTG
TCACTCCACCTTACCCGCCGCCCACGTGGGCAGCCTTTGCACGTTACGTG
GTGGAAATACTTGGTTCTGGCGGCTATTGATTTGGAGGGCAATTATTTGG
TGGTTCTCTCATTTCGGTACACCTCCATCACCTCCGTCCTCCTCCTCGAC
GGCTTTGCCATCCCTTGTACCATGCTGCTGTCCCGCTTGTATTTGAAAAG
TCGGTTTCAGCTCCTGCATTTCGTAGGGGTGGTGGCATGCTTGGCAGGGT
TGGGGGTCGTCGTTTACTCGGACTATAGGGTGCTCCATGCTCACGAGGGT
GGAAGTGATGAGGATGGAGGTCAAGTGATGCGGGTATCGTCTTCAACGTC
CTCCGCTGTATCGTCATCCGTCACTACCTCCGCCGCCGCCACCTTTCCCC
ACGCACTGGAAGGCGACCTCCTTACCCTCCTCGGTGCCGCGCTGTACGCG
TGCTCGAACGTTCTGCAGGAGCTGGTCCTTAAGACCCACGATAATCCCCA
CGAGTTTCTGGGCATGCTGGGCGGTTTTGGATTTCTCCTCGCGAGCCTAC
AAGCCTTGTTTGTCGAGTGGGGAAGGGAGGGAGGGAGGAAGGGCGAGGAG
AAGGAGTGGGAGGAAGGGCTGGGGTACATGTTTGGGTTTGCGCTGACGCT
GGCGACAATGTACACCTTGACTGCCATTTTTTTGAGGGAGGCGGACGCCA
CGCTATTCAATCTCTCTCTCCTTACCTCGGATGTCTACGCGGTGCTCTAC
CGCTACTTTGCACAACATCAACCAATATCATGGTTGTATGGTTTAGGTTT
TTTATTTACCTTGGGAGGGCTTGGCTTGTATCATGTGCCTGGGGCAGTGA
ACCCTCGGAAGAGAGTGAGGGGGGGGAAGTGGGGAGATGGGAAGGGGTGA
ATGCCTTTGGCGCTGAATTGGACGGTGGGGTTGGGGAGGACGTGGAAGGT
GAGGATCACCGTGGAGGGGGAGGGAGGGTATTGTGAAAAAAATAGAAAGC
AATTTAACGTATGTACATGTCTTAGACGTATAGAATCAAAAACCAAAAAA
ATGCAACGAAAGGAAGGAGGAC
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protein sequence of NO14G02860.1

>NO14G02860.1-protein ID=NO14G02860.1-protein|Name=NO14G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MCRLVFDNCDMHYTHTIRSMAVNLLREEEDVETASSISHTTASTALLYLP
PSGSPSPPSTPSTSAETTTATASKEQRHRLLLGLGLGQILSLLIAGTGIF
SSLLAEQGLSLPATQACLTYILLSLHLTRRPRGQPLHVTWWKYLVLAAID
LEGNYLVVLSFRYTSITSVLLLDGFAIPCTMLLSRLYLKSRFQLLHFVGV
VACLAGLGVVVYSDYRVLHAHEGGSDEDGGQVMRVSSSTSSAVSSSVTTS
AAATFPHALEGDLLTLLGAALYACSNVLQELVLKTHDNPHEFLGMLGGFG
FLLASLQALFVEWGREGGRKGEEKEWEEGLGYMFGFALTLATMYTLTAIF
LREADATLFNLSLLTSDVYAVLYRYFAQHQPISWLYGLGFLFTLGGLGLY
HVPGAVNPRKRVRGGKWGDGKG*
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mRNA from alignment at chr14:849407..851392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02860.1 ID=NO14G02860.1|Name=NO14G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at chr14:849407..851392- (Nannochloropsis oceanica)
GCTAAATTACGACCTTTGATTTCGATCTGTCTGAGGCATACGTATGTGTC
TCCTTTCGACCGTGATGAGACTTTCAGGCAAATGTGCCGTCTAGTATTCG
ACAATTGCGACATGCACTACACACACACAATCAGGAGCATGGCAGTCAAT
CTACTTCGGGAAGAGGAAGACGTGGAGACAGCATCCTCCATCTCCCACAC
TACGGCTTCCACAGCCCTCCTCTACCTCCCACCCTCGGGCTCGCCATCTC
CTCCTTCGACACCTTCCACCTCAGCTGAGACCACGACAGCAACAGCATCA
AAGGAACAACGTCATCGTCTGCTTCTCGGCCTCGGCTTGGGCCAAATACT
CTCGTTACTCATTGCGGGGACAGGTATTTTCTCATCCCTGCTCGCGGAGC
AAGGGCTATCCCTCCCAGCAACCCAAGCATGCCTGACCTACATCCTCCTG
TCACTCCACCTTACCCGCCGCCCACGTGGGCAGCCTTTGCACGTTACGTG
GTGGAAATACTTGGTTCTGGCGGCTATTGATTTGGAGGGCAATTATTTGG
TGCGTGAAGTGAAGGAGGAGGGAGCGAGGAGGAGTGTTGAGATTCTTACA
AACAATAAAGTAGCACGTTCTCACACCCTCCCTCCCTCCCTCCTCTCCCT
CCCTCCCTCCCCCTACAGGTGGTTCTCTCATTTCGGTACACCTCCATCAC
CTCCGTCCTCCTCCTCGACGGCTTTGCCATCCCTTGTACCATGCTGCTGT
CCCGCTTGTATTTGAAAAGTCGGTTTCAGCTCCTGCATTTCGTAGGGGTG
GTGGCATGCTTGGCAGGGTTGGGGGTCGTCGTTTACTCGGACTATAGGGT
GCTCCATGCTCACGAGGGTGGAAGTGATGAGGATGGAGGTCAAGTGATGC
GGGTATCGTCTTCAACGTCCTCCGCTGTATCGTCATCCGTCACTACCTCC
GCCGCCGCCACCTTTCCCCACGCACTGGAAGGCGACCTCCTTACCCTCCT
CGGTGCCGCGCTGTACGCGTGCTCGAACGTTCTGCAGGCATGTAACTACG
CGTTGCGAGGATAACAAGATGGAAGGGGGGCTGGAGAAGGAATTTGTGGG
AGGAAGGGGGGGCTGACAATGCACGAACATCGTCTTCTTACCTTAACCCT
CCCTCCCTCCCATCCTCCCTCTCTTCCTCAGGAGCTGGTCCTTAAGACCC
ACGATAATCCCCACGAGTTTCTGGGCATGCTGGGCGGTTTTGGATTTCTC
CTCGCGAGCCTACAAGCCTTGTTTGTCGAGTGGGGAAGGGAGGGAGGGAG
GAAGGGCGAGGAGAAGGAGTGGGAGGAAGGGCTGGGGTACATGTTTGGGT
TTGCGCTGACGCTGGCGACAATGTACACCTTGACTGCCATTTTTTTGAGG
GAGGTGAGTGAATCAGAAGGAGGAGGGGAGGAGGAAAGGAAGGGGAGAAG
GGGGGAATGGAAGGGAAGAGAGGGAGGGGAAGGGAGGAAGGGGCTAAAGG
CGAGTAGGGATTATGAAGTCTTTGATGAAGACTTGATGCTATATCAAGCC
TGACGGTGTGCTTTCTCTCCTTCTCTATTCCCTCTCTTCCCTTTCTCTCA
TCAGGCGGACGCCACGCTATTCAATCTCTCTCTCCTTACCTCGGATGTCT
ACGCGGTGCTCTACCGCTACTTTGCACAACATCAACCAATATCATGGTTG
TATGGTTTAGGTTTTTTATTTACCTTGGGAGGGCTTGGCTTGTATCATGT
GCCTGGGGCAGTGAACCCTCGGAAGAGAGTGAGGGGGGGGAAGTGGGGAG
ATGGGAAGGGGTGAATGCCTTTGGCGCTGAATTGGACGGTGGGGTTGGGG
AGGACGTGGAAGGTGAGGATCACCGTGGAGGGGGAGGGAGGGTATTGTGA
AAAAAATAGAAAGCAATTTAACGTATGTACATGTCTTAGACGTATAGAAT
CAAAAACCAAAAAAATGCAACGAAAGGAAGGAGGAC
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Coding sequence (CDS) from alignment at chr14:849407..851392-

>NO14G02860.1 ID=NO14G02860.1|Name=NO14G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr14:849407..851392- (Nannochloropsis oceanica)
ATGTGCCGTCTAGTATTCGACAATTGCGACATGCACTACACACACACAAT
CAGGAGCATGGCAGTCAATCTACTTCGGGAAGAGGAAGACGTGGAGACAG
CATCCTCCATCTCCCACACTACGGCTTCCACAGCCCTCCTCTACCTCCCA
CCCTCGGGCTCGCCATCTCCTCCTTCGACACCTTCCACCTCAGCTGAGAC
CACGACAGCAACAGCATCAAAGGAACAACGTCATCGTCTGCTTCTCGGCC
TCGGCTTGGGCCAAATACTCTCGTTACTCATTGCGGGGACAGGTATTTTC
TCATCCCTGCTCGCGGAGCAAGGGCTATCCCTCCCAGCAACCCAAGCATG
CCTGACCTACATCCTCCTGTCACTCCACCTTACCCGCCGCCCACGTGGGC
AGCCTTTGCACGTTACGTGGTGGAAATACTTGGTTCTGGCGGCTATTGAT
TTGGAGGGCAATTATTTGGTGGTTCTCTCATTTCGGTACACCTCCATCAC
CTCCGTCCTCCTCCTCGACGGCTTTGCCATCCCTTGTACCATGCTGCTGT
CCCGCTTGTATTTGAAAAGTCGGTTTCAGCTCCTGCATTTCGTAGGGGTG
GTGGCATGCTTGGCAGGGTTGGGGGTCGTCGTTTACTCGGACTATAGGGT
GCTCCATGCTCACGAGGGTGGAAGTGATGAGGATGGAGGTCAAGTGATGC
GGGTATCGTCTTCAACGTCCTCCGCTGTATCGTCATCCGTCACTACCTCC
GCCGCCGCCACCTTTCCCCACGCACTGGAAGGCGACCTCCTTACCCTCCT
CGGTGCCGCGCTGTACGCGTGCTCGAACGTTCTGCAGGAGCTGGTCCTTA
AGACCCACGATAATCCCCACGAGTTTCTGGGCATGCTGGGCGGTTTTGGA
TTTCTCCTCGCGAGCCTACAAGCCTTGTTTGTCGAGTGGGGAAGGGAGGG
AGGGAGGAAGGGCGAGGAGAAGGAGTGGGAGGAAGGGCTGGGGTACATGT
TTGGGTTTGCGCTGACGCTGGCGACAATGTACACCTTGACTGCCATTTTT
TTGAGGGAGGCGGACGCCACGCTATTCAATCTCTCTCTCCTTACCTCGGA
TGTCTACGCGGTGCTCTACCGCTACTTTGCACAACATCAACCAATATCAT
GGTTGTATGGTTTAGGTTTTTTATTTACCTTGGGAGGGCTTGGCTTGTAT
CATGTGCCTGGGGCAGTGAACCCTCGGAAGAGAGTGAGGGGGGGGAAGTG
GGGAGATGGGAAGGGGTGA
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Synonyms
Publications