NO14G02780.1, NO14G02780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02780.1
Unique NameNO14G02780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr14:826234..828441 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:826234..828441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02780.1 vs.
Match: EWM24538.1 (Peptidase aspartic [Nannochloropsis gaditana])

HSP 1 Score: 582.8 bits (1501), Expect = 1.100e-162
Identity = 317/466 (68.03%), Postives = 362/466 (77.68%), Query Frame = 0 
Query:   69 LLLLLFLKECQAFFPPSPSSLLR-----PSLYPRTATTLHSSSPPS--------SSPPSSPSSSSPSDLLHEVRKLRASVIKSELSTLGVPTTGIIDKEELVRLLAHNRQQFQQHQKRQQQQQEKQRAQGGKEGGKPYAARVPFRQKTPPSTLPGGGQASPGPKSYVCVDVWVKGEKLEFLIDSGATPTIITERTRARLGLSELGGGQRIEGVTATGAGAAPRVMLNEVSLLPPGGR-EGGMGGGMVNMDALVMGNEGVLPPGVDGLLGVVWMRFFGIVDFSWASQTLTVYPYDVRGPGGGSRVGGLEVILEDPQPTLLSRGVTMRQDPMSGLHFVDLTLSTGGS--PVPALVDLGAGMSIVNWRAARQAGIERETSPRVIRNAMSVWGIDGTAMPVDLCDFECLSLEKGVSLTRRRIGVADLPAFGLIGYGQRPVGVVGMDVLGGTDPNSRRIVFDFRRNQLYTM 519
            LLL L      AF PP+PSS        P+  P+T +   S  PP         SS PSS S SS S  L E+RKLRASVIK+EL +LGV T GI+DKEELV LL H+R      ++R+   +++   QGG+E    Y ARV FRQKTPPSTLPGGGQA PGPKSYVCVD+W+K EK EFLIDSGATPTIITERTR+RL + EL GGQRIEGVTATG GAAPRVML EVSLL P  R   G GGGMVNMDALVMGNEGVLPPGVDGLLGVVWMR+FG+VDF WASQ+LTVYPYDVR    GS  G L ++LE P P+LL+RGV MRQDPMSG++FV+L L+  G+  PVPA+VDLGAG+S+VNWRAA+QAG+ERE+S RV+RNAMSVWGIDGT +PVDLCDFE LSLE GV+L R+RIGVADLPAF LIGYG +PVGVVGMDVLGGTDPN+RRIVFDFRR+ LY M
Sbjct:   52 LLLSLLSTVAHAFLPPAPSSSSLSCTPFPAFNPQTRS--QSLCPPPFPFTALCRSSSPSSTSPSSSSSSLEEIRKLRASVIKAELGSLGVSTAGIVDKEELVALLLHHRTH--SPERREGTSEKRTEGQGGREAPPLYTARVKFRQKTPPSTLPGGGQAGPGPKSYVCVDLWIKNEKYEFLIDSGATPTIITERTRSRLNVRELAGGQRIEGVTATGGGAAPRVMLEEVSLLSPTERGRAGEGGGMVNMDALVMGNEGVLPPGVDGLLGVVWMRYFGLVDFDWASQSLTVYPYDVRDRTSGS--GDLGLVLETPSPSLLARGVNMRQDPMSGIYFVNLFLTPPGASPPVPAIVDLGAGLSMVNWRAAKQAGVERESSSRVVRNAMSVWGIDGTTLPVDLCDFEALSLENGVTLNRKRIGVADLPAFALIGYGSKPVGVVGMDVLGGTDPNNRRIVFDFRRSMLYMM 511
The following BLAST results are available for this feature:
BLAST of NO14G02780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24538.11.100e-16268.03Peptidase aspartic [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02780NO14G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02780.1NO14G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02780.1.cds1NO14G02780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02780.1.cds2NO14G02780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02780.1.cds3NO14G02780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02780.1 ID=NO14G02780.1|Name=NO14G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
ATGGCACCTATGTCCTTCGCTGCCTACCGAGCCCAACAAGCCGTGGTACG
GGAAGTATTCGACGAGGAGACAGGCAGGATGAGGCTGGTCAGGGGCACTG
GGGAGATAATCGAGCGAATTGTGAGCAAAGAGCAACAGCGGGCCATCAAT
AAACGGGCAACGGAAGGAGATGGACTGAGCTTCCAAGTGATGATGCGCAA
AGCCCTCCTTCTCCTCCTTTTCCTTAAAGAATGCCAAGCCTTTTTTCCCC
CTTCCCCTTCTTCTCTCCTTCGCCCTTCCCTCTACCCCCGCACGGCCACG
ACCCTCCACTCTTCCTCCCCCCCATCTTCCTCCCCCCCCTCCTCCCCTTC
CTCTTCCTCTCCTTCCGACCTCCTCCACGAGGTCCGCAAGCTCCGCGCCT
CCGTTATCAAGTCAGAGCTCTCTACCCTCGGTGTACCGACCACAGGCATC
ATCGACAAGGAAGAACTAGTTCGCCTCCTCGCCCACAACCGCCAGCAGTT
TCAACAACACCAGAAGCGTCAACAGCAACAGCAAGAAAAGCAACGAGCCC
AGGGAGGGAAGGAAGGAGGGAAGCCCTATGCCGCCCGTGTGCCCTTTCGT
CAAAAGACTCCGCCTTCTACGCTACCCGGAGGAGGACAGGCCAGCCCCGG
GCCGAAGAGCTATGTGTGCGTGGATGTGTGGGTGAAAGGCGAGAAACTAG
AGTTTCTGATTGATTCAGGCGCGACCCCTACGATCATCACAGAGAGGACA
AGGGCGAGGTTAGGGTTGAGTGAACTTGGGGGGGGTCAAAGGATCGAGGG
TGTCACAGCCACAGGGGCAGGAGCAGCGCCTCGGGTGATGTTAAACGAAG
TGTCTTTGCTCCCGCCAGGGGGGCGGGAAGGAGGGATGGGGGGAGGGATG
GTGAACATGGATGCGTTGGTGATGGGGAATGAGGGGGTGTTGCCTCCAGG
CGTGGATGGATTGCTCGGCGTGGTGTGGATGAGGTTCTTCGGCATTGTCG
ACTTTTCGTGGGCCAGCCAAACACTCACTGTCTACCCCTATGACGTGCGA
GGCCCGGGGGGAGGAAGCAGGGTGGGAGGGCTAGAGGTGATTTTGGAGGA
TCCGCAGCCAACGTTGCTATCGAGGGGGGTAACCATGAGGCAGGATCCGA
TGAGTGGGCTGCATTTCGTGGATTTAACGTTGAGCACGGGTGGCAGCCCT
GTCCCAGCCCTGGTGGACCTGGGCGCCGGCATGAGTATAGTTAATTGGCG
GGCCGCGAGGCAAGCCGGAATCGAAAGAGAAACCAGCCCTCGGGTGATAC
GAAACGCGATGAGTGTCTGGGGCATCGACGGCACAGCCATGCCCGTCGAT
TTGTGTGACTTTGAGTGCTTGAGTTTGGAAAAAGGCGTGAGTCTGACGCG
GAGGAGGATAGGCGTGGCAGACTTACCTGCGTTTGGATTGATCGGCTATG
GGCAACGACCGGTGGGGGTGGTGGGGATGGATGTATTGGGAGGGACGGAT
CCGAACAGCAGAAGGATTGTGTTTGACTTTCGACGTAATCAGTTGTACAC
CATGTGA
back to top

protein sequence of NO14G02780.1

>NO14G02780.1-protein ID=NO14G02780.1-protein|Name=NO14G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MAPMSFAAYRAQQAVVREVFDEETGRMRLVRGTGEIIERIVSKEQQRAIN
KRATEGDGLSFQVMMRKALLLLLFLKECQAFFPPSPSSLLRPSLYPRTAT
TLHSSSPPSSSPPSSPSSSSPSDLLHEVRKLRASVIKSELSTLGVPTTGI
IDKEELVRLLAHNRQQFQQHQKRQQQQQEKQRAQGGKEGGKPYAARVPFR
QKTPPSTLPGGGQASPGPKSYVCVDVWVKGEKLEFLIDSGATPTIITERT
RARLGLSELGGGQRIEGVTATGAGAAPRVMLNEVSLLPPGGREGGMGGGM
VNMDALVMGNEGVLPPGVDGLLGVVWMRFFGIVDFSWASQTLTVYPYDVR
GPGGGSRVGGLEVILEDPQPTLLSRGVTMRQDPMSGLHFVDLTLSTGGSP
VPALVDLGAGMSIVNWRAARQAGIERETSPRVIRNAMSVWGIDGTAMPVD
LCDFECLSLEKGVSLTRRRIGVADLPAFGLIGYGQRPVGVVGMDVLGGTD
PNSRRIVFDFRRNQLYTM*
back to top

mRNA from alignment at chr14:826234..828441+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02780.1 ID=NO14G02780.1|Name=NO14G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at chr14:826234..828441+ (Nannochloropsis oceanica)
ATGGCACCTATGTCCTTCGCTGCCTACCGAGCCCAACAAGCCGTGGTACG
GGAAGTATTCGACGAGGAGACAGGCAGGATGAGGCTGGTCAGGGGCACTG
GGGAGATAATCGAGCGAATTGTGAGCAAAGAGCAACAGCGGGCCATCAAT
AAACGGGCAACGGAAGGAGATGGACTGAGCTTCCAAGTGATGATGCGCAA
AGGTGGTGGAAAATAGAAAGGAGGATGAGAAGGAGGTGGAGGCGAAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGAGGATTGAGGATGAGGAGGGTCA
AGGAAAGAAGAAGGAGAAGGAGAATAATTCAAGTTACGGGCTCTCAGAGA
CGACCTGAGTGATGTCGTGACTTTGTTGTCACATTGTGGTGAGACAAGAG
AGAGATGCCCACGAGGACTAGTGGAGCGGATACAAATACGAATACTCGCG
AAAGACCGCCAAACGCGAAGAACGAAAAAGGAGGGAAGGAAACATACAAC
GCCAATCCCTTCTCCCCTCCCCACACATACCCTATTTCTCTACAGGCCCA
CACAAACCGTTGCAGAGACATTTAAAACTGATGATACCGAGAAGACCGAC
AAGTCCCACCGGGCAGGCCCCACGAAGTTTTTCCTTCCTTCTTCTCCTTC
TCCTTCCAGCCCTCCTTCTCCTCCTTTTCCTTAAAGAATGCCAAGCCTTT
TTTCCCCCTTCCCCTTCTTCTCTCCTTCGCCCTTCCCTCTACCCCCGCAC
GGCCACGACCCTCCACTCTTCCTCCCCCCCATCTTCCTCCCCCCCCTCCT
CCCCTTCCTCTTCCTCTCCTTCCGACCTCCTCCACGAGGTCCGCAAGCTC
CGCGCCTCCGTTATCAAGTCAGAGCTCTCTACCCTCGGTGTACCGACCAC
AGGCATCATCGACAAGGAAGAACTAGTTCGCCTCCTCGCCCACAACCGCC
AGCAGTTTCAACAACACCAGAAGCGTCAACAGCAACAGCAAGAAAAGCAA
CGAGCCCAGGGAGGGAAGGAAGGAGGGAAGCCCTATGCCGCCCGTGTGCC
CTTTCGTCAAAAGACTCCGCCTTCTACGCTACCCGGAGGAGGACAGGCCA
GCCCCGGGCCGAAGAGCTATGTGTGCGTGGATGTGTGGGTGAAAGGCGAG
AAACTAGAGTTTCTGATTGATTCAGGCGCGACCCCTACGATCATCACAGA
GAGGACAAGGGCGAGGTTAGGGTTGAGTGAACTTGGGGGGGGTCAAAGGA
TCGAGGGTGTCACAGCCACAGGGGCAGGAGCAGCGCCTCGGGTGATGTTA
AACGAAGTGTCTTTGCTCCCGCCAGGGGGGCGGGAAGGAGGGATGGGGGG
AGGGATGGTGAACATGGATGCGTTGGTGATGGGGAATGAGGGGGTGTTGC
CTCCAGGCGTGGATGGATTGCTCGGCGTGGTGTGGATGAGGTTCTTCGGC
ATTGTCGACTTTTCGTGGGCCAGCCAAACACTCACTGTCTACCCCTATGA
CGTGCGAGGCCCGGGGGGAGGAAGCAGGGTGGGAGGGCTAGAGGTGATTT
TGGAGGATCCGCAGCCAACGTTGCTATCGAGGGGGGTAACCATGAGGCAG
GATCCGATGAGTGGGCTGCATTTCGTGGATTTAACGTTGAGCACGGGTGG
CAGCCCTGTCCCAGCCCTGGTGGACCTGGGCGCCGGCATGAGTATAGTTA
ATTGGCGGGCCGCGAGGCAAGCCGGAATCGAAAGGTAAGTTTTTTTCTTT
TTTTCTTTCCTTCCTTTCCTTTTTCTTCCTTCGTTAGTTGTTTCGATCTT
GGCTTTGGTGTAAAACGGCGCAGTGATGAGTATGGTAACCCTAGCCCTAA
CCTTTTCTTCTATCCGCCCCTTCCTCCTTCCCTCCTCGTTCACAACTGAC
CGCTCCCTCGTTCCTACCCTCCCTGCAGAGAAACCAGCCCTCGGGTGATA
CGAAACGCGATGAGTGTCTGGGGCATCGACGGCACAGCCATGCCCGTCGA
TTTGTGTGACTTTGAGTGCTTGAGTTTGGAAAAAGGCGTGAGTCTGACGC
GGAGGAGGATAGGCGTGGCAGACTTACCTGCGTTTGGATTGATCGGCTAT
GGGCAACGACCGGTGGGGGTGGTGGGGATGGATGTATTGGGAGGGACGGA
TCCGAACAGCAGAAGGATTGTGTTTGACTTTCGACGTAATCAGTTGTACA
CCATGTGA
back to top

Coding sequence (CDS) from alignment at chr14:826234..828441+

>NO14G02780.1 ID=NO14G02780.1|Name=NO14G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr14:826234..828441+ (Nannochloropsis oceanica)
ATGGCACCTATGTCCTTCGCTGCCTACCGAGCCCAACAAGCCGTGGTACG
GGAAGTATTCGACGAGGAGACAGGCAGGATGAGGCTGGTCAGGGGCACTG
GGGAGATAATCGAGCGAATTGTGAGCAAAGAGCAACAGCGGGCCATCAAT
AAACGGGCAACGGAAGGAGATGGACTGAGCTTCCAAGTGATGATGCGCAA
AGCCCTCCTTCTCCTCCTTTTCCTTAAAGAATGCCAAGCCTTTTTTCCCC
CTTCCCCTTCTTCTCTCCTTCGCCCTTCCCTCTACCCCCGCACGGCCACG
ACCCTCCACTCTTCCTCCCCCCCATCTTCCTCCCCCCCCTCCTCCCCTTC
CTCTTCCTCTCCTTCCGACCTCCTCCACGAGGTCCGCAAGCTCCGCGCCT
CCGTTATCAAGTCAGAGCTCTCTACCCTCGGTGTACCGACCACAGGCATC
ATCGACAAGGAAGAACTAGTTCGCCTCCTCGCCCACAACCGCCAGCAGTT
TCAACAACACCAGAAGCGTCAACAGCAACAGCAAGAAAAGCAACGAGCCC
AGGGAGGGAAGGAAGGAGGGAAGCCCTATGCCGCCCGTGTGCCCTTTCGT
CAAAAGACTCCGCCTTCTACGCTACCCGGAGGAGGACAGGCCAGCCCCGG
GCCGAAGAGCTATGTGTGCGTGGATGTGTGGGTGAAAGGCGAGAAACTAG
AGTTTCTGATTGATTCAGGCGCGACCCCTACGATCATCACAGAGAGGACA
AGGGCGAGGTTAGGGTTGAGTGAACTTGGGGGGGGTCAAAGGATCGAGGG
TGTCACAGCCACAGGGGCAGGAGCAGCGCCTCGGGTGATGTTAAACGAAG
TGTCTTTGCTCCCGCCAGGGGGGCGGGAAGGAGGGATGGGGGGAGGGATG
GTGAACATGGATGCGTTGGTGATGGGGAATGAGGGGGTGTTGCCTCCAGG
CGTGGATGGATTGCTCGGCGTGGTGTGGATGAGGTTCTTCGGCATTGTCG
ACTTTTCGTGGGCCAGCCAAACACTCACTGTCTACCCCTATGACGTGCGA
GGCCCGGGGGGAGGAAGCAGGGTGGGAGGGCTAGAGGTGATTTTGGAGGA
TCCGCAGCCAACGTTGCTATCGAGGGGGGTAACCATGAGGCAGGATCCGA
TGAGTGGGCTGCATTTCGTGGATTTAACGTTGAGCACGGGTGGCAGCCCT
GTCCCAGCCCTGGTGGACCTGGGCGCCGGCATGAGTATAGTTAATTGGCG
GGCCGCGAGGCAAGCCGGAATCGAAAGAGAAACCAGCCCTCGGGTGATAC
GAAACGCGATGAGTGTCTGGGGCATCGACGGCACAGCCATGCCCGTCGAT
TTGTGTGACTTTGAGTGCTTGAGTTTGGAAAAAGGCGTGAGTCTGACGCG
GAGGAGGATAGGCGTGGCAGACTTACCTGCGTTTGGATTGATCGGCTATG
GGCAACGACCGGTGGGGGTGGTGGGGATGGATGTATTGGGAGGGACGGAT
CCGAACAGCAGAAGGATTGTGTTTGACTTTCGACGTAATCAGTTGTACAC
CATGTGA
back to top
Synonyms
Publications