NO14G02760.1, NO14G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02760.1
Unique NameNO14G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1684
Alignment locationchr14:806809..808492 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:806809..808492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02760.1 vs.
Match: EWM24536.1 (lipolytic protein g-d-s-l family [Nannochloropsis gaditana])

HSP 1 Score: 405.6 bits (1041), Expect = 2.200e-109
Identity = 228/480 (47.50%), Postives = 285/480 (59.38%), Query Frame = 0 
Query:    8 LSPLLLQLLLILLLAVAFAPIVVAAATSFSARSTADVVHHQQGLPFFYPATDNAIHWSGRVLR-DDYGRVTFDWPGVTASFRIEGNASIVEVLVNDTTVEGTRFAVYLDSPGQEQQHLQTFLTKRGIMYYPLLSGNKFQTRGLALPSDVTLSMVHTQESRYLAETAAGDNVTVVGFTTNGLLASPLPATRRLEFIGDSITAGYGADAAAPCHPSVVNNNYALTWAHLLCQKLRAECFVEAYSGSGVIFSYPDPASPPVTMPERYHDTLAS-NRLKG------EGGHPWVVDMDAFRPDAIVINLGTNDFCCGGAQNASFVQEYEDAYLSFVMGVVQSYAVPSARERNGKMEETNEGYESVRRSVEVKEVGVMADLSALREKDEMIYLRAAALRGSPPFLASSLSYPVVFLGVGPMSDQYKAPLQRVLKRLINHGIRAHYLDLILPPNVAMGGCDSHPNEEVHQQVARHALPVLASVMGWE 480
            L P  L  +L + +   F   V  A    S   T      QQ LP FY ATD+ I+WSGRVLR ++Y RV FDWPGVTASF+++ NA+ V V+V+D+++ GTRFAV+ DSP    + L+ F T RG+  Y L        +GL    +VT+SMVHTQE+++L+  AA +NVTV+GF T+G L+ P P+TRRLEFIGDSITAGYGAD  APC  SV  NNY LTWAH LCQ L AECFVEAYSG GV  SYP P +  VTMPER+ DTLAS ++LK         G  W VD   FRPDA++ NLGTNDFCCG  +N++FV+ Y  AY  FV  V++ YAVP+           +      R   E  E                     A L  +P         PVVFLGVGPMS +Y+   + V++RL   G+RA  LDL+L P V MGGC  HP   VH  VA  A PV+ + MGW+
Sbjct:   35 LKPAWLSFMLFVFVMSNF---VRDAWAITSRMGTVPSFQKQQDLPSFYTATDDDINWSGRVLRNEEYMRVVFDWPGVTASFQVDENATAVTVMVDDSSLVGTRFAVFYDSPTARHRKLREFRTLRGVFSYTLADVGILGAQGLRFEPNVTISMVHTQEAQFLSNNAAVNNVTVLGFGTDGFLSRPSPSTRRLEFIGDSITAGYGADGLAPCVGSVETNNYVLTWAHALCQSLDAECFVEAYSGVGVYASYPHPGTVEVTMPERFADTLASAHQLKNMTTGGLSPGFRWKVDASTFRPDALIFNLGTNDFCCGRGENSTFVEAYAAAYYQFVSKVLEFYAVPAGTRAKDLPIRPSSRKGPARAGDEPAE---------------------APLGAAPA--------PVVFLGVGPMSARYQGATRGVVERLTRRGVRAILLDLMLDPTVLMGGCLGHPTGAVHAAVAEKAFPVVEATMGWK 482
The following BLAST results are available for this feature:
BLAST of NO14G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24536.12.200e-10947.50lipolytic protein g-d-s-l family [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02760NO14G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02760.1NO14G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02760.1.cds1NO14G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02760.1 ID=NO14G02760.1|Name=NO14G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp
CAGGGGCCATGCGCCAAGCACTACCACCATTATCTCCCCTGCTCCTCCAA
CTCCTCCTCATCCTCCTCCTCGCAGTCGCCTTTGCCCCTATAGTGGTTGC
TGCGGCCACATCCTTTTCAGCGCGCAGCACCGCTGACGTCGTCCACCACC
AGCAGGGCCTTCCTTTCTTCTACCCTGCGACGGATAATGCGATTCATTGG
AGCGGCCGCGTGCTGCGAGACGATTACGGGCGCGTCACCTTCGACTGGCC
CGGTGTCACGGCATCTTTCCGCATCGAGGGCAATGCTAGCATTGTTGAGG
TGTTGGTGAACGATACCACAGTCGAGGGGACGCGCTTTGCAGTATACTTG
GACTCGCCGGGGCAAGAACAACAGCACTTGCAAACGTTCTTGACGAAACG
GGGGATCATGTACTACCCGTTGCTCAGCGGCAACAAGTTTCAAACACGAG
GGCTTGCGCTCCCTTCTGATGTCACGCTTTCGATGGTACACACGCAAGAA
TCGCGTTACCTGGCCGAGACGGCGGCAGGCGATAACGTGACAGTGGTGGG
ATTTACTACGAATGGGCTCCTGGCAAGTCCTCTTCCGGCTACACGCCGGC
TTGAATTCATTGGAGACAGCATCACAGCAGGCTATGGGGCGGATGCTGCG
GCACCGTGCCATCCCAGCGTGGTGAACAACAATTATGCCCTCACATGGGC
CCATTTGCTCTGCCAAAAGTTACGCGCCGAATGCTTCGTGGAGGCTTACT
CGGGAAGCGGTGTGATATTCAGTTACCCGGACCCAGCTTCTCCGCCTGTA
ACGATGCCCGAGCGGTATCACGATACCTTAGCCAGCAACCGCTTGAAGGG
AGAAGGAGGGCATCCCTGGGTGGTGGACATGGACGCGTTTCGTCCCGATG
CTATAGTAATAAACCTGGGCACAAATGATTTCTGTTGCGGTGGGGCCCAA
AATGCAAGCTTCGTGCAGGAATATGAAGATGCATATTTGAGCTTTGTAAT
GGGAGTGGTACAGAGCTATGCCGTGCCATCAGCAAGGGAGAGGAATGGGA
AAATGGAGGAGACGAATGAGGGATACGAGAGCGTGAGAAGAAGCGTGGAG
GTGAAGGAGGTGGGGGTGATGGCCGACTTATCGGCTTTGAGGGAGAAAGA
TGAAATGATCTATCTCCGAGCTGCGGCGTTGCGTGGCTCTCCACCATTTT
TGGCATCGTCGTTATCTTACCCTGTGGTATTTTTAGGCGTAGGCCCTATG
AGTGATCAGTACAAAGCGCCGCTTCAGCGAGTCCTCAAGCGTTTGATAAA
TCACGGCATCCGCGCGCACTACCTCGACTTGATTCTACCGCCGAACGTGG
CTATGGGAGGATGTGACAGCCATCCCAATGAGGAAGTGCATCAGCAGGTT
GCCAGACATGCATTGCCGGTGTTGGCGAGCGTGATGGGTTGGGAGGACAA
TAAACACTACTTTTGAGCGCGTTCGATACGTCCCCAAAAAATATTTTTTG
TTTCGTTTTTAATATGCAGGCTTTTGTTGGATGATGGTGTATGAAACATA
GTGCCAGCGTGGTGTGCAAAAGACGATGGGAGTGGTGAAATAAAGCAAAA
TCAAAAGTTTCTTTTCGCTGCCCTTTTGTAGGGATCAAGACGTTCAGTAG
AATTAGAGCAAAACCGGCAAGCAGTGCATGAGCA
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protein sequence of NO14G02760.1

>NO14G02760.1-protein ID=NO14G02760.1-protein|Name=NO14G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MRQALPPLSPLLLQLLLILLLAVAFAPIVVAAATSFSARSTADVVHHQQG
LPFFYPATDNAIHWSGRVLRDDYGRVTFDWPGVTASFRIEGNASIVEVLV
NDTTVEGTRFAVYLDSPGQEQQHLQTFLTKRGIMYYPLLSGNKFQTRGLA
LPSDVTLSMVHTQESRYLAETAAGDNVTVVGFTTNGLLASPLPATRRLEF
IGDSITAGYGADAAAPCHPSVVNNNYALTWAHLLCQKLRAECFVEAYSGS
GVIFSYPDPASPPVTMPERYHDTLASNRLKGEGGHPWVVDMDAFRPDAIV
INLGTNDFCCGGAQNASFVQEYEDAYLSFVMGVVQSYAVPSARERNGKME
ETNEGYESVRRSVEVKEVGVMADLSALREKDEMIYLRAAALRGSPPFLAS
SLSYPVVFLGVGPMSDQYKAPLQRVLKRLINHGIRAHYLDLILPPNVAMG
GCDSHPNEEVHQQVARHALPVLASVMGWEDNKHYF*
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mRNA from alignment at chr14:806809..808492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02760.1 ID=NO14G02760.1|Name=NO14G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp|location=Sequence derived from alignment at chr14:806809..808492- (Nannochloropsis oceanica)
CAGGGGCCATGCGCCAAGCACTACCACCATTATCTCCCCTGCTCCTCCAA
CTCCTCCTCATCCTCCTCCTCGCAGTCGCCTTTGCCCCTATAGTGGTTGC
TGCGGCCACATCCTTTTCAGCGCGCAGCACCGCTGACGTCGTCCACCACC
AGCAGGGCCTTCCTTTCTTCTACCCTGCGACGGATAATGCGATTCATTGG
AGCGGCCGCGTGCTGCGAGACGATTACGGGCGCGTCACCTTCGACTGGCC
CGGTGTCACGGCATCTTTCCGCATCGAGGGCAATGCTAGCATTGTTGAGG
TGTTGGTGAACGATACCACAGTCGAGGGGACGCGCTTTGCAGTATACTTG
GACTCGCCGGGGCAAGAACAACAGCACTTGCAAACGTTCTTGACGAAACG
GGGGATCATGTACTACCCGTTGCTCAGCGGCAACAAGTTTCAAACACGAG
GGCTTGCGCTCCCTTCTGATGTCACGCTTTCGATGGTACACACGCAAGAA
TCGCGTTACCTGGCCGAGACGGCGGCAGGCGATAACGTGACAGTGGTGGG
ATTTACTACGAATGGGCTCCTGGCAAGTCCTCTTCCGGCTACACGCCGGC
TTGAATTCATTGGAGACAGCATCACAGCAGGCTATGGGGCGGATGCTGCG
GCACCGTGCCATCCCAGCGTGGTGAACAACAATTATGCCCTCACATGGGC
CCATTTGCTCTGCCAAAAGTTACGCGCCGAATGCTTCGTGGAGGCTTACT
CGGGAAGCGGTGTGATATTCAGTTACCCGGACCCAGCTTCTCCGCCTGTA
ACGATGCCCGAGCGGTATCACGATACCTTAGCCAGCAACCGCTTGAAGGG
AGAAGGAGGGCATCCCTGGGTGGTGGACATGGACGCGTTTCGTCCCGATG
CTATAGTAATAAACCTGGGCACAAATGATTTCTGTTGCGGTGGGGCCCAA
AATGCAAGCTTCGTGCAGGAATATGAAGATGCATATTTGAGCTTTGTAAT
GGGAGTGGTACAGAGCTATGCCGTGCCATCAGCAAGGGAGAGGAATGGGA
AAATGGAGGAGACGAATGAGGGATACGAGAGCGTGAGAAGAAGCGTGGAG
GTGAAGGAGGTGGGGGTGATGGCCGACTTATCGGCTTTGAGGGAGAAAGA
TGAAATGATCTATCTCCGAGCTGCGGCGTTGCGTGGCTCTCCACCATTTT
TGGCATCGTCGTTATCTTACCCTGTGGTATTTTTAGGCGTAGGCCCTATG
AGTGATCAGTACAAAGCGCCGCTTCAGCGAGTCCTCAAGCGTTTGATAAA
TCACGGCATCCGCGCGCACTACCTCGACTTGATTCTACCGCCGAACGTGG
CTATGGGAGGATGTGACAGCCATCCCAATGAGGAAGTGCATCAGCAGGTT
GCCAGACATGCATTGCCGGTGTTGGCGAGCGTGATGGGTTGGGAGGACAA
TAAACACTACTTTTGAGCGCGTTCGATACGTCCCCAAAAAATATTTTTTG
TTTCGTTTTTAATATGCAGGCTTTTGTTGGATGATGGTGTATGAAACATA
GTGCCAGCGTGGTGTGCAAAAGACGATGGGAGTGGTGAAATAAAGCAAAA
TCAAAAGTTTCTTTTCGCTGCCCTTTTGTAGGGATCAAGACGTTCAGTAG
AATTAGAGCAAAACCGGCAAGCAGTGCATGAGCA
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Coding sequence (CDS) from alignment at chr14:806809..808492-

>NO14G02760.1 ID=NO14G02760.1|Name=NO14G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr14:806809..808492- (Nannochloropsis oceanica)
ATGCGCCAAGCACTACCACCATTATCTCCCCTGCTCCTCCAACTCCTCCT
CATCCTCCTCCTCGCAGTCGCCTTTGCCCCTATAGTGGTTGCTGCGGCCA
CATCCTTTTCAGCGCGCAGCACCGCTGACGTCGTCCACCACCAGCAGGGC
CTTCCTTTCTTCTACCCTGCGACGGATAATGCGATTCATTGGAGCGGCCG
CGTGCTGCGAGACGATTACGGGCGCGTCACCTTCGACTGGCCCGGTGTCA
CGGCATCTTTCCGCATCGAGGGCAATGCTAGCATTGTTGAGGTGTTGGTG
AACGATACCACAGTCGAGGGGACGCGCTTTGCAGTATACTTGGACTCGCC
GGGGCAAGAACAACAGCACTTGCAAACGTTCTTGACGAAACGGGGGATCA
TGTACTACCCGTTGCTCAGCGGCAACAAGTTTCAAACACGAGGGCTTGCG
CTCCCTTCTGATGTCACGCTTTCGATGGTACACACGCAAGAATCGCGTTA
CCTGGCCGAGACGGCGGCAGGCGATAACGTGACAGTGGTGGGATTTACTA
CGAATGGGCTCCTGGCAAGTCCTCTTCCGGCTACACGCCGGCTTGAATTC
ATTGGAGACAGCATCACAGCAGGCTATGGGGCGGATGCTGCGGCACCGTG
CCATCCCAGCGTGGTGAACAACAATTATGCCCTCACATGGGCCCATTTGC
TCTGCCAAAAGTTACGCGCCGAATGCTTCGTGGAGGCTTACTCGGGAAGC
GGTGTGATATTCAGTTACCCGGACCCAGCTTCTCCGCCTGTAACGATGCC
CGAGCGGTATCACGATACCTTAGCCAGCAACCGCTTGAAGGGAGAAGGAG
GGCATCCCTGGGTGGTGGACATGGACGCGTTTCGTCCCGATGCTATAGTA
ATAAACCTGGGCACAAATGATTTCTGTTGCGGTGGGGCCCAAAATGCAAG
CTTCGTGCAGGAATATGAAGATGCATATTTGAGCTTTGTAATGGGAGTGG
TACAGAGCTATGCCGTGCCATCAGCAAGGGAGAGGAATGGGAAAATGGAG
GAGACGAATGAGGGATACGAGAGCGTGAGAAGAAGCGTGGAGGTGAAGGA
GGTGGGGGTGATGGCCGACTTATCGGCTTTGAGGGAGAAAGATGAAATGA
TCTATCTCCGAGCTGCGGCGTTGCGTGGCTCTCCACCATTTTTGGCATCG
TCGTTATCTTACCCTGTGGTATTTTTAGGCGTAGGCCCTATGAGTGATCA
GTACAAAGCGCCGCTTCAGCGAGTCCTCAAGCGTTTGATAAATCACGGCA
TCCGCGCGCACTACCTCGACTTGATTCTACCGCCGAACGTGGCTATGGGA
GGATGTGACAGCCATCCCAATGAGGAAGTGCATCAGCAGGTTGCCAGACA
TGCATTGCCGGTGTTGGCGAGCGTGATGGGTTGGGAGGACAATAAACACT
ACTTTTGA
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Synonyms
Publications