NO14G02740.1, NO14G02740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02740.1
Unique NameNO14G02740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr14:801580..803751 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:801580..803751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02740.1 vs.
Match: CBN76253.1 (terbinafine resistance locus protein (yip1) [Ectocarpus siliculosus])

HSP 1 Score: 240.7 bits (613), Expect = 3.800e-60
Identity = 119/180 (66.11%), Postives = 154/180 (85.56%), Query Frame = 0 
Query:   22 TLDEPVWHTVKRDLMQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTLNAQLLGGTISFFQSLCILGYCVFPLDIAALANLLVGL-AFESVIVKALIVALGFAWATRASVIFIGQVIAPERKVLALFPVFFFYTFLAWLVLV 201
            TLDEPV  T+ RDL  VG+KL++VL PR +QDGVL KLKDWDLWGPL+VCLTLSI+LS++AP +QGALVFAAVF VVW GAA+VTLNAQLLGGTISFFQS+C+LGYCVFPL ++A+  L++ L  F +V V+  +V +GF WATRAS +FI ++I+ ERK+LA++PVFFFYTF++W++++
Sbjct:   29 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 208
The following BLAST results are available for this feature:
BLAST of NO14G02740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN76253.13.800e-6066.11terbinafine resistance locus protein (yip1) [Ectoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02740NO14G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02740.1NO14G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02740.1.cds1NO14G02740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02740.1.cds2NO14G02740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02740.1.cds3NO14G02740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02740.1.cds4NO14G02740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02740.1.cds5NO14G02740.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02740.1 ID=NO14G02740.1|Name=NO14G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
GAAAAACGCAATTCGAAGAAACGTTCAGGCCATGTCGCTTTCCTTTGTGT
GCCCAGGCAACTGCCACACATGGCACAGGCAGCACCACATGAAGAGGACA
GTGCCTAGGAGATAGCACTGCTGCAGGACCTGGGGGTGACGCAGGTCCCT
TATTGTCGTGCGCCTCACACGGTGTTTCTTGAGCCGTTGTCAGGGTAACA
CCCTCCCATGCCTCATGTTCCTTCCCTACGCATACCTACACACAGGCAGG
CAGCGGGACATCCACAACAGCAGCCTGTAAAATAGATAGGCAGCCATGAT
AAGCGCAGGCCAGCAGCAAGACCACTATTCAGGGCAAATGGACGGGCATA
ACTCCATGACTTTGGATGAGCCCGTCTGGCATACAGTGAAACGAGACCTC
ATGCAGGTCGGTTCCAAGCTACAGGTGGTACTACTACCCAGAGAAAACCA
AGACGGCGTGCTCAAGAAACTCAAGGACTGGGACCTCTGGGGCCCGCTCC
TCGTTTGCCTGACCCTCTCTATTCTCCTCAGCATCACCGCGCCGGAGGAA
CAAGGCGCCCTGGTCTTTGCCGCCGTGTTTTTTGTGGTGTGGTTTGGTGC
GGCTGTTGTCACTTTGAATGCCCAGCTCTTGGGTGGTACTATCTCCTTTT
TCCAAAGCTTGTGCATCCTAGGTTACTGCGTCTTCCCCCTCGACATTGCC
GCGCTCGCTAATCTCTTGGTGGGTCTAGCTTTTGAGTCGGTGATTGTCAA
GGCCCTAATAGTCGCCCTGGGGTTCGCATGGGCCACACGAGCCTCCGTCA
TCTTCATCGGTCAAGTCATCGCGCCCGAGCGGAAGGTGCTGGCCCTCTTC
CCGGTATTCTTTTTCTACACCTTCTTGGCATGGCTAGTGTTGGTCCAATA
AATCGTTACCCTTTCGTCAAAAAATACGACAAAAAAAAACACTTGAAGAC
GACAAAAAAGCACGAGGGAGAAGTTGTGTATGTTTAGCAGTGTGGGAGGG
AGGGAATGGACGAGGAAAGGACAGATGAGCAAGGTTGTTCAGTGGTTAAT
TTGGGAGGAAGAAAGGAAGGGAGGGGGGGCTGTAGGGTGTATTTGTGCGG
TGGATGTATTAATGACCGCCTCCCTTGTGGTTCTATTTGTGGTCATCGTT
CCTCCTTCGATTTTGATGACGGTGACGACCGGGCGAAAAGCGACAACCAA
TGGCAGGGACGGAATGGAATAGGGTGGTGACTCCGCGTCTCTTGAACAAT
AAAAAAAGAAAAGAAATGAAGAAAAAAAAACCGATAGACCCTGTTGAATA
AAAATGCGCGTCAATCTGGATCTGTAGAGGAGAGCGTCGTTAACGCAGGG
TGACACTGAAAA
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protein sequence of NO14G02740.1

>NO14G02740.1-protein ID=NO14G02740.1-protein|Name=NO14G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MISAGQQQDHYSGQMDGHNSMTLDEPVWHTVKRDLMQVGSKLQVVLLPRE
NQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWF
GAAVVTLNAQLLGGTISFFQSLCILGYCVFPLDIAALANLLVGLAFESVI
VKALIVALGFAWATRASVIFIGQVIAPERKVLALFPVFFFYTFLAWLVLV
Q*
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mRNA from alignment at chr14:801580..803751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02740.1 ID=NO14G02740.1|Name=NO14G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp|location=Sequence derived from alignment at chr14:801580..803751- (Nannochloropsis oceanica)
GAAAAACGCAATTCGAAGAAACGTTCAGGCCATGTCGCTTTCCTTTGTGT
GCCCAGGCAACTGCCACACATGGCACAGGCAGCACCACATGAAGAGGACA
GTGCCTAGGAGATAGCACTGCTGCAGGACCTGGGGGTGACGCAGGTCCCT
TATTGTCGTGCGCCTCACACGGTGTTTCTTGAGCCGTTGTCAGGGTAACA
CCCTCCCATGCCTCATGTTCCTTCCCTACGCATACCTACACACAGGCAGG
CAGCGGGACATCCACAACAGCAGCCTGTAAAATAGATAGGCAGCCATGAT
AAGCGCAGGCCAGCAGCAAGACCACTATTCAGGGCAAATGGACGGGCATA
ACTCCATGACTTTGGATGAGCCCGTCTGGCATACAGTGGTACGTTTGGGG
GCGGCGGTAGCAGCTGTGGAAGGGAGAAGCAGGCGAGGAGATACGGGATT
GTGTGTAGGTCATTTAGACCTGTTGTTTTGACGCTGTCGTTTTTGCTGTC
GGCAGGTTGAGTTGTGATGCATGAAGCAGAGGAAGCAAGGAGGGAGGAGA
GGAAGGCTTGTAGAGTGGTGATGATGGTGCGTTTCTGTATGCCCCTTTGC
TTTGCCCTGCTTACATGAGTCGCATAATTTGCACAAGAGGAAATCTTGAG
ATGATGGATAAAGGGGACCTCCTGAAGGCTTCGAGGATTCGAAATTACAG
CTGTCAACTCACGACCCCCTTCCTTCCTCCCCCCTCCCCTTTTTCTACCT
TTTCGTTTCATTCCCCATGAAAAACGCAGAAACGAGACCTCATGCAGGTC
GGTTCCAAGCTACAGGTGGTACTACTACCCAGAGAAAACCAAGACGGCGT
GCTCAAGAAACTCAAGGACTGTGCGTATGGAAGAGGGATTGAGGGAGGGG
AGAAGCCAGGCTACATTGTTGTTGACAGACGCTTGAGAAATGTGCGAGTA
AAAGAGGATGATATACTGACCTGATTTCATGCGTATCCCCTACATGTCCA
AACACGCTTTCATAGGGGACCTCTGGGGCCCGCTCCTCGTTTGCCTGACC
CTCTCTATTCTCCTCAGCATCACCGCGCCGGAGGAACAAGGCGCCCTGGT
CTTTGCCGCCGTGTTTTTTGTGGTGTGGTTTGGTGCGGCTGTTGTCACTT
TGAATGCCCAGCTCTTGGGTGGTACTATGTGAGTGCGTGTGATCGATTGT
GCCTCCCTTCCCCGGCTCTCATATTTCCTTGGAGCCATGCCTCCCATCCC
TCATGACGTACTCCTCTTCGCCCGACTGAAATTTCCTCCTCTTTCCTCTT
TCCTCTTTCCTCCCTCCACCAGCTCCTTTTTCCAAAGCTTGTGCATCCTA
GGTTACTGCGTCTTCCCCCTCGACATTGCCGCGCTCGCTAATCTCTTGGT
GGGTCTAGCTTTTGAGTCGGTGATTGTCAAGGCCCTAATAGTCGCCCTGG
GGTTCGCATGGGCCACACGAGGTACAGAAGGGAGGGAGAGGAAAATTACA
TTTCTTTCATTGAGTATATTTTTAAAAAGTGGAAAAGGCATGAAACCTTT
GACACCCATCAAACCCCCTCCCCCCCTTCCTCCCTCCCCCCCCCCCCCCA
GCCTCCGTCATCTTCATCGGTCAAGTCATCGCGCCCGAGCGGAAGGTGCT
GGCCCTCTTCCCGGTATTCTTTTTCTACACCTTCTTGGCATGGCTAGTGT
TGGTCCAATAAATCGTTACCCTTTCGTCAAAAAATACGACAAAAAAAAAC
ACTTGAAGACGACAAAAAAGCACGAGGGAGAAGTTGTGTATGTTTAGCAG
TGTGGGAGGGAGGGAATGGACGAGGAAAGGACAGATGAGCAAGGTTGTTC
AGTGGTTAATTTGGGAGGAAGAAAGGAAGGGAGGGGGGGCTGTAGGGTGT
ATTTGTGCGGTGGATGTATTAATGACCGCCTCCCTTGTGGTTCTATTTGT
GGTCATCGTTCCTCCTTCGATTTTGATGACGGTGACGACCGGGCGAAAAG
CGACAACCAATGGCAGGGACGGAATGGAATAGGGTGGTGACTCCGCGTCT
CTTGAACAATAAAAAAAGAAAAGAAATGAAGAAAAAAAAACCGATAGACC
CTGTTGAATAAAAATGCGCGTCAATCTGGATCTGTAGAGGAGAGCGTCGT
TAACGCAGGGTGACACTGAAAA
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Coding sequence (CDS) from alignment at chr14:801580..803751-

>NO14G02740.1 ID=NO14G02740.1|Name=NO14G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr14:801580..803751- (Nannochloropsis oceanica)
ATGATAAGCGCAGGCCAGCAGCAAGACCACTATTCAGGGCAAATGGACGG
GCATAACTCCATGACTTTGGATGAGCCCGTCTGGCATACAGTGAAACGAG
ACCTCATGCAGGTCGGTTCCAAGCTACAGGTGGTACTACTACCCAGAGAA
AACCAAGACGGCGTGCTCAAGAAACTCAAGGACTGGGACCTCTGGGGCCC
GCTCCTCGTTTGCCTGACCCTCTCTATTCTCCTCAGCATCACCGCGCCGG
AGGAACAAGGCGCCCTGGTCTTTGCCGCCGTGTTTTTTGTGGTGTGGTTT
GGTGCGGCTGTTGTCACTTTGAATGCCCAGCTCTTGGGTGGTACTATCTC
CTTTTTCCAAAGCTTGTGCATCCTAGGTTACTGCGTCTTCCCCCTCGACA
TTGCCGCGCTCGCTAATCTCTTGGTGGGTCTAGCTTTTGAGTCGGTGATT
GTCAAGGCCCTAATAGTCGCCCTGGGGTTCGCATGGGCCACACGAGCCTC
CGTCATCTTCATCGGTCAAGTCATCGCGCCCGAGCGGAAGGTGCTGGCCC
TCTTCCCGGTATTCTTTTTCTACACCTTCTTGGCATGGCTAGTGTTGGTC
CAATAA
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Synonyms
Publications