NO14G02700.1, NO14G02700.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02700.1
Unique Name	NO14G02700.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2133
Alignment location	chr14:794863..796995 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:794863..796995 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO14G02700.1 vs.
Match: EWM24540.1 (mitogen-activated protein kinase kinase 6 [Nannochloropsis gaditana])

HSP 1 Score: 568.5 bits (1464), Expect = 2.800e-158
Identity = 389/724 (53.73%), Postives = 460/724 (63.54%), Query Frame = 0

Query:    4 PPLPRIQEDFAQKLTLEVDVDPTPPPLTIGTGTAFSPLRLEIAT---GSSSSG-CGSDDSGCGGNRQHDGSNGGATSGGGSSGGMSSSSKRRHATSNKS--DSKTLSISKSGSIHIAGFEIRKSGLTQTSQPI-YYKHNSSIGGQLSTTPSSGSWGESSNGAASPSFILSNGPGRSGEPMSPFSTNDSGRNMPSVSVSNDT--QSLQDALAPLAVLGRGAGGTVWQGIHVPSLRLVAVKTILVFEEGRRHQMVRELRALYANLAPLGRPTPT------PPAGAAAAAAPAGTGYPSKNCRKGSGKGKAQRKTAVEHEDLFAGGLSKEAAAAAAAAAAAVGKTPPTQATAAAAVAAAATAGCPQLVSFYDAYVSPTEGTVSIVQEYMDGGSLQEIVDGGGCAAEAVLSHIAREVLEGLAFLHERRQIHRDIKPANLLLNHKGQVKISDFGLVRHLDSSISQADTFVGTFTYMSPERICGEEYSYSADVWGVGLTLVTCAMGRFPYDHSGGYWGLVSALREMDSPSLPPS-FSPSFRDFVRQCLNKDPKKRPTARYLLKHHPFLQRGGEGGREGGSRWVVPPASP----------GGYGAEEEEEEEEEGGMGGGSVSARRELMDIVQVVKAYYRRLWNDSSSSSCSSSNSSTSSRTSTSTSGSRSGGAQGGILLLPNTQAQALAGLARQLGVPSRVVREAFRMMLRELIEEQ-VEGGREKEEEDG 701
            P  P +++ FA+KL L V+VDPTPPPLTIG+ +AFSPL+LEI T    S+SSG C SDD+   G+        G      SS   SSSS R H+   K   D+KTL ISKSGSIHI GFEIRKSGL Q + P   Y + SS+    ST P S    E   G    S  L  G   + +  S  S   SG ++ +   +++T  Q L D L PL VLGRGAGG+VWQGIHVPSLRLVAVKTI VFEEGRR QMV+ELR+LY NLAP   P+ +      PP    A+  P  +         G+G    Q             GL  E +        A   +P     A A+       GCPQLVSFYDAY +P EGTVSIVQE+MD GSLQ++VD GGCA EAVL+H+AREVL GLA+LH RRQIHRDIKPANLLLNH+G+VKISDFGLVRH D+SIS+ADTFVGTFTYMSPERICG EY YSAD+WGVGLTLVTCA+GR PY+ +GGYW LVSAL+E + PSLP S FS  FRDFVRQCLNK+P KRPTARYLL  HPFL++       G     V  A+P           G G  E EEEE    +G GS SARREL DI++ VK+YYRRLW D      S+++SS S        G      +GG L+LPN Q +AL GLA QLG+P RVVR AFR ML E+I+EQ +E G E+ EEDG
Sbjct:   10 PRSPSMEQCFAEKLRLTVEVDPTPPPLTIGSESAFSPLQLEIPTDHGNSTSSGDCVSDDTSSVGD--------GRVCEDWSSAA-SSSSLRPHSGRKKGAKDAKTLCISKSGSIHIGGFEIRKSGLFQKNTPNDLYANQSSV---TSTPPKSSGGREKRTGGTPLSLTLDEGSVATNDMASCPS---SGGSLGAHGCADETPGQGLHDCLVPLGVLGRGAGGSVWQGIHVPSLRLVAVKTIPVFEEGRRLQMVQELRSLYWNLAPFLPPSSSLAPSHSPPRTIPASPPPFPSAADGPGPIGGTGGRGGQ-------------GLVGEPSGQVLIGTGAHRGSPVGGMDAGASRGGG---GCPQLVSFYDAYANPREGTVSIVQEFMDAGSLQDVVDAGGCADEAVLAHMAREVLLGLAYLHARRQIHRDIKPANLLLNHRGEVKISDFGLVRHFDASISRADTFVGTFTYMSPERICGGEYGYSADIWGVGLTLVTCALGRLPYEDAGGYWELVSALKEREPPSLPRSEFSSEFRDFVRQCLNKEPSKRPTARYLLDRHPFLRQTRRA--VGQKSPTVSAAAPEIGDTKHVERKGLGRVEWEEEEAGEDVGAGSTSARRELSDILEAVKSYYRRLWQDMGLHGSSNTHSSNSQ------GGDDPDVKKGGALMLPNAQMEALKGLAGQLGLPLRVVRAAFRQMLHEMIKEQCMEAGAEEGEEDG 694

The following BLAST results are available for this feature:

BLAST of NO14G02700.1 vs.

BLAST of NO14G02700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24540.1	2.800e-158	53.73	mitogen-activated protein kinase kinase 6 [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G02700	NO14G02700	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02700.1	NO14G02700.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02700.1.cds1	NO14G02700.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:794863..796995-
coding sequence from alignment at chr14:794863..796995-

mRNA sequence

>NO14G02700.1 ID=NO14G02700.1|Name=NO14G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp
ATGGCCCTCCCGCCGCTCCCCAGGATCCAGGAGGACTTTGCACAGAAGCT
TACGCTAGAGGTTGATGTCGACCCGACGCCACCCCCATTGACCATCGGGA
CGGGCACGGCCTTTAGTCCCTTACGCCTGGAGATCGCCACAGGGAGTAGC
AGCAGTGGGTGCGGGAGCGACGATAGCGGATGTGGCGGTAACCGGCAACA
CGATGGCAGCAACGGCGGGGCCACGTCAGGGGGGGGGTCGTCGGGCGGAA
TGTCCTCGTCCTCGAAGCGCAGACACGCCACCAGCAACAAGAGCGACTCC
AAGACGCTTAGTATTTCCAAGAGCGGCTCCATCCATATCGCTGGCTTCGA
GATCCGCAAGTCTGGACTGACCCAGACAAGCCAGCCAATATACTACAAAC
ACAACAGCAGCATTGGCGGGCAGCTTTCCACCACGCCCTCCTCCGGCTCC
TGGGGAGAGAGCAGTAATGGCGCCGCCTCCCCCTCCTTCATCTTGAGTAA
TGGCCCTGGCCGTTCTGGTGAGCCCATGTCCCCATTTTCCACAAATGACA
GTGGTCGCAACATGCCCAGCGTTAGCGTGAGCAATGACACTCAAAGTTTA
CAAGACGCGTTGGCACCCTTGGCCGTGCTAGGGCGAGGGGCAGGTGGCAC
TGTTTGGCAAGGTATCCACGTTCCCAGCCTGCGCTTGGTGGCTGTGAAAA
CCATTCTGGTGTTTGAAGAAGGAAGGCGGCATCAGATGGTGAGAGAACTG
AGAGCTCTATACGCAAATTTAGCTCCGTTAGGCCGGCCTACTCCTACTCC
TCCTGCTGGTGCTGCTGCCGCTGCAGCACCAGCAGGAACAGGGTATCCGT
CAAAAAATTGTCGGAAAGGCAGTGGGAAGGGTAAAGCCCAGAGGAAAACC
GCAGTAGAGCATGAGGATTTGTTCGCAGGAGGGTTAAGTAAAGAGGCGGC
TGCTGCGGCCGCCGCGGCTGCGGCTGCCGTTGGCAAGACTCCACCTACAC
AAGCAACAGCAGCAGCAGCAGTAGCGGCGGCGGCGACAGCTGGATGTCCC
CAATTGGTATCGTTTTATGACGCGTACGTCAGCCCTACTGAAGGGACCGT
GAGCATCGTCCAGGAATACATGGATGGAGGCTCACTGCAAGAAATAGTCG
ATGGCGGGGGCTGTGCTGCCGAAGCCGTCCTGTCCCATATCGCCCGCGAG
GTCCTGGAGGGGCTGGCCTTCCTGCATGAACGGCGACAGATCCATCGTGA
CATCAAGCCGGCCAACCTCCTGCTCAATCACAAGGGGCAGGTCAAAATTA
GCGACTTTGGCTTGGTCCGCCACCTGGATTCCTCTATTTCCCAGGCGGAC
ACATTTGTGGGGACTTTTACGTACATGTCGCCAGAACGCATCTGCGGAGA
AGAGTACAGCTATTCCGCCGACGTCTGGGGCGTGGGATTGACGCTTGTCA
CATGCGCCATGGGCCGGTTTCCTTACGATCACTCAGGAGGGTATTGGGGG
CTGGTCTCGGCGTTGAGGGAGATGGACTCTCCTTCCCTCCCGCCCTCGTT
CTCCCCTTCTTTTCGAGATTTTGTGCGGCAGTGTTTGAATAAAGATCCGA
AGAAGAGGCCGACGGCCAGGTATCTGTTAAAGCACCATCCATTTTTGCAG
AGGGGAGGGGAGGGAGGAAGAGAGGGAGGGAGCCGATGGGTTGTCCCTCC
GGCATCGCCGGGGGGGTATGGGGCCGAGGAGGAGGAGGAGGAAGAGGAGG
AGGGAGGGATGGGAGGGGGGTCGGTGAGCGCGAGGAGAGAATTGATGGAT
ATAGTGCAGGTCGTGAAGGCGTACTACCGTCGTTTGTGGAACGACAGCAG
CAGCAGCAGCTGCAGTAGTAGTAATAGTAGTACTAGTAGTAGAACTAGTA
CTAGTACTAGTGGTAGCAGGAGTGGTGGTGCCCAAGGAGGAATATTGTTG
TTGCCTAATACGCAAGCACAGGCCTTAGCGGGGCTGGCGAGGCAGCTGGG
GGTGCCATCGAGGGTCGTGAGGGAGGCGTTTCGAATGATGCTGAGAGAGC
TGATCGAGGAGCAGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGG
GCGGAGGCAAGAAGGAGGAGAGGGAGTGAGTAA

protein sequence of NO14G02700.1

>NO14G02700.1-protein ID=NO14G02700.1-protein|Name=NO14G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MALPPLPRIQEDFAQKLTLEVDVDPTPPPLTIGTGTAFSPLRLEIATGSS
SSGCGSDDSGCGGNRQHDGSNGGATSGGGSSGGMSSSSKRRHATSNKSDS
KTLSISKSGSIHIAGFEIRKSGLTQTSQPIYYKHNSSIGGQLSTTPSSGS
WGESSNGAASPSFILSNGPGRSGEPMSPFSTNDSGRNMPSVSVSNDTQSL
QDALAPLAVLGRGAGGTVWQGIHVPSLRLVAVKTILVFEEGRRHQMVREL
RALYANLAPLGRPTPTPPAGAAAAAAPAGTGYPSKNCRKGSGKGKAQRKT
AVEHEDLFAGGLSKEAAAAAAAAAAAVGKTPPTQATAAAAVAAAATAGCP
QLVSFYDAYVSPTEGTVSIVQEYMDGGSLQEIVDGGGCAAEAVLSHIARE
VLEGLAFLHERRQIHRDIKPANLLLNHKGQVKISDFGLVRHLDSSISQAD
TFVGTFTYMSPERICGEEYSYSADVWGVGLTLVTCAMGRFPYDHSGGYWG
LVSALREMDSPSLPPSFSPSFRDFVRQCLNKDPKKRPTARYLLKHHPFLQ
RGGEGGREGGSRWVVPPASPGGYGAEEEEEEEEEGGMGGGSVSARRELMD
IVQVVKAYYRRLWNDSSSSSCSSSNSSTSSRTSTSTSGSRSGGAQGGILL
LPNTQAQALAGLARQLGVPSRVVREAFRMMLRELIEEQVEGGREKEEEDG
AEARRRRGSE*

mRNA from alignment at chr14:794863..796995-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G02700.1 ID=NO14G02700.1|Name=NO14G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp|location=Sequence derived from alignment at chr14:794863..796995- (Nannochloropsis oceanica)
ATGGCCCTCCCGCCGCTCCCCAGGATCCAGGAGGACTTTGCACAGAAGCT
TACGCTAGAGGTTGATGTCGACCCGACGCCACCCCCATTGACCATCGGGA
CGGGCACGGCCTTTAGTCCCTTACGCCTGGAGATCGCCACAGGGAGTAGC
AGCAGTGGGTGCGGGAGCGACGATAGCGGATGTGGCGGTAACCGGCAACA
CGATGGCAGCAACGGCGGGGCCACGTCAGGGGGGGGGTCGTCGGGCGGAA
TGTCCTCGTCCTCGAAGCGCAGACACGCCACCAGCAACAAGAGCGACTCC
AAGACGCTTAGTATTTCCAAGAGCGGCTCCATCCATATCGCTGGCTTCGA
GATCCGCAAGTCTGGACTGACCCAGACAAGCCAGCCAATATACTACAAAC
ACAACAGCAGCATTGGCGGGCAGCTTTCCACCACGCCCTCCTCCGGCTCC
TGGGGAGAGAGCAGTAATGGCGCCGCCTCCCCCTCCTTCATCTTGAGTAA
TGGCCCTGGCCGTTCTGGTGAGCCCATGTCCCCATTTTCCACAAATGACA
GTGGTCGCAACATGCCCAGCGTTAGCGTGAGCAATGACACTCAAAGTTTA
CAAGACGCGTTGGCACCCTTGGCCGTGCTAGGGCGAGGGGCAGGTGGCAC
TGTTTGGCAAGGTATCCACGTTCCCAGCCTGCGCTTGGTGGCTGTGAAAA
CCATTCTGGTGTTTGAAGAAGGAAGGCGGCATCAGATGGTGAGAGAACTG
AGAGCTCTATACGCAAATTTAGCTCCGTTAGGCCGGCCTACTCCTACTCC
TCCTGCTGGTGCTGCTGCCGCTGCAGCACCAGCAGGAACAGGGTATCCGT
CAAAAAATTGTCGGAAAGGCAGTGGGAAGGGTAAAGCCCAGAGGAAAACC
GCAGTAGAGCATGAGGATTTGTTCGCAGGAGGGTTAAGTAAAGAGGCGGC
TGCTGCGGCCGCCGCGGCTGCGGCTGCCGTTGGCAAGACTCCACCTACAC
AAGCAACAGCAGCAGCAGCAGTAGCGGCGGCGGCGACAGCTGGATGTCCC
CAATTGGTATCGTTTTATGACGCGTACGTCAGCCCTACTGAAGGGACCGT
GAGCATCGTCCAGGAATACATGGATGGAGGCTCACTGCAAGAAATAGTCG
ATGGCGGGGGCTGTGCTGCCGAAGCCGTCCTGTCCCATATCGCCCGCGAG
GTCCTGGAGGGGCTGGCCTTCCTGCATGAACGGCGACAGATCCATCGTGA
CATCAAGCCGGCCAACCTCCTGCTCAATCACAAGGGGCAGGTCAAAATTA
GCGACTTTGGCTTGGTCCGCCACCTGGATTCCTCTATTTCCCAGGCGGAC
ACATTTGTGGGGACTTTTACGTACATGTCGCCAGAACGCATCTGCGGAGA
AGAGTACAGCTATTCCGCCGACGTCTGGGGCGTGGGATTGACGCTTGTCA
CATGCGCCATGGGCCGGTTTCCTTACGATCACTCAGGAGGGTATTGGGGG
CTGGTCTCGGCGTTGAGGGAGATGGACTCTCCTTCCCTCCCGCCCTCGTT
CTCCCCTTCTTTTCGAGATTTTGTGCGGCAGTGTTTGAATAAAGATCCGA
AGAAGAGGCCGACGGCCAGGTATCTGTTAAAGCACCATCCATTTTTGCAG
AGGGGAGGGGAGGGAGGAAGAGAGGGAGGGAGCCGATGGGTTGTCCCTCC
GGCATCGCCGGGGGGGTATGGGGCCGAGGAGGAGGAGGAGGAAGAGGAGG
AGGGAGGGATGGGAGGGGGGTCGGTGAGCGCGAGGAGAGAATTGATGGAT
ATAGTGCAGGTCGTGAAGGCGTACTACCGTCGTTTGTGGAACGACAGCAG
CAGCAGCAGCTGCAGTAGTAGTAATAGTAGTACTAGTAGTAGAACTAGTA
CTAGTACTAGTGGTAGCAGGAGTGGTGGTGCCCAAGGAGGAATATTGTTG
TTGCCTAATACGCAAGCACAGGCCTTAGCGGGGCTGGCGAGGCAGCTGGG
GGTGCCATCGAGGGTCGTGAGGGAGGCGTTTCGAATGATGCTGAGAGAGC
TGATCGAGGAGCAGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGG
GCGGAGGCAAGAAGGAGGAGAGGGAGTGAGTAA

Coding sequence (CDS) from alignment at chr14:794863..796995-

>NO14G02700.1 ID=NO14G02700.1|Name=NO14G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at chr14:794863..796995- (Nannochloropsis oceanica)
ATGGCCCTCCCGCCGCTCCCCAGGATCCAGGAGGACTTTGCACAGAAGCT
TACGCTAGAGGTTGATGTCGACCCGACGCCACCCCCATTGACCATCGGGA
CGGGCACGGCCTTTAGTCCCTTACGCCTGGAGATCGCCACAGGGAGTAGC
AGCAGTGGGTGCGGGAGCGACGATAGCGGATGTGGCGGTAACCGGCAACA
CGATGGCAGCAACGGCGGGGCCACGTCAGGGGGGGGGTCGTCGGGCGGAA
TGTCCTCGTCCTCGAAGCGCAGACACGCCACCAGCAACAAGAGCGACTCC
AAGACGCTTAGTATTTCCAAGAGCGGCTCCATCCATATCGCTGGCTTCGA
GATCCGCAAGTCTGGACTGACCCAGACAAGCCAGCCAATATACTACAAAC
ACAACAGCAGCATTGGCGGGCAGCTTTCCACCACGCCCTCCTCCGGCTCC
TGGGGAGAGAGCAGTAATGGCGCCGCCTCCCCCTCCTTCATCTTGAGTAA
TGGCCCTGGCCGTTCTGGTGAGCCCATGTCCCCATTTTCCACAAATGACA
GTGGTCGCAACATGCCCAGCGTTAGCGTGAGCAATGACACTCAAAGTTTA
CAAGACGCGTTGGCACCCTTGGCCGTGCTAGGGCGAGGGGCAGGTGGCAC
TGTTTGGCAAGGTATCCACGTTCCCAGCCTGCGCTTGGTGGCTGTGAAAA
CCATTCTGGTGTTTGAAGAAGGAAGGCGGCATCAGATGGTGAGAGAACTG
AGAGCTCTATACGCAAATTTAGCTCCGTTAGGCCGGCCTACTCCTACTCC
TCCTGCTGGTGCTGCTGCCGCTGCAGCACCAGCAGGAACAGGGTATCCGT
CAAAAAATTGTCGGAAAGGCAGTGGGAAGGGTAAAGCCCAGAGGAAAACC
GCAGTAGAGCATGAGGATTTGTTCGCAGGAGGGTTAAGTAAAGAGGCGGC
TGCTGCGGCCGCCGCGGCTGCGGCTGCCGTTGGCAAGACTCCACCTACAC
AAGCAACAGCAGCAGCAGCAGTAGCGGCGGCGGCGACAGCTGGATGTCCC
CAATTGGTATCGTTTTATGACGCGTACGTCAGCCCTACTGAAGGGACCGT
GAGCATCGTCCAGGAATACATGGATGGAGGCTCACTGCAAGAAATAGTCG
ATGGCGGGGGCTGTGCTGCCGAAGCCGTCCTGTCCCATATCGCCCGCGAG
GTCCTGGAGGGGCTGGCCTTCCTGCATGAACGGCGACAGATCCATCGTGA
CATCAAGCCGGCCAACCTCCTGCTCAATCACAAGGGGCAGGTCAAAATTA
GCGACTTTGGCTTGGTCCGCCACCTGGATTCCTCTATTTCCCAGGCGGAC
ACATTTGTGGGGACTTTTACGTACATGTCGCCAGAACGCATCTGCGGAGA
AGAGTACAGCTATTCCGCCGACGTCTGGGGCGTGGGATTGACGCTTGTCA
CATGCGCCATGGGCCGGTTTCCTTACGATCACTCAGGAGGGTATTGGGGG
CTGGTCTCGGCGTTGAGGGAGATGGACTCTCCTTCCCTCCCGCCCTCGTT
CTCCCCTTCTTTTCGAGATTTTGTGCGGCAGTGTTTGAATAAAGATCCGA
AGAAGAGGCCGACGGCCAGGTATCTGTTAAAGCACCATCCATTTTTGCAG
AGGGGAGGGGAGGGAGGAAGAGAGGGAGGGAGCCGATGGGTTGTCCCTCC
GGCATCGCCGGGGGGGTATGGGGCCGAGGAGGAGGAGGAGGAAGAGGAGG
AGGGAGGGATGGGAGGGGGGTCGGTGAGCGCGAGGAGAGAATTGATGGAT
ATAGTGCAGGTCGTGAAGGCGTACTACCGTCGTTTGTGGAACGACAGCAG
CAGCAGCAGCTGCAGTAGTAGTAATAGTAGTACTAGTAGTAGAACTAGTA
CTAGTACTAGTGGTAGCAGGAGTGGTGGTGCCCAAGGAGGAATATTGTTG
TTGCCTAATACGCAAGCACAGGCCTTAGCGGGGCTGGCGAGGCAGCTGGG
GGTGCCATCGAGGGTCGTGAGGGAGGCGTTTCGAATGATGCTGAGAGAGC
TGATCGAGGAGCAGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGG
GCGGAGGCAAGAAGGAGGAGAGGGAGTGAGTAA

Synonyms

Publications